Wall clock time and date at job start Tue Mar 31 2020 14:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87289 * 2 1 4 4 C 1.54320 * 110.01030 * 238.90305 * 2 1 3 5 5 C 1.55159 * 102.94349 * 262.70280 * 4 2 1 6 6 H 1.09000 * 111.00165 * 82.60756 * 5 4 2 7 7 N 1.46492 * 111.00591 * 206.42744 * 5 4 2 8 8 C 1.36937 * 119.99917 * 205.00048 * 7 5 4 9 9 H 1.07996 * 120.00410 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99897 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00221 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99869 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46829 * 90.00111 * 12 10 8 14 14 H 1.48497 * 109.46887 * 209.99886 * 12 10 8 15 15 H 1.48491 * 109.47099 * 330.00191 * 12 10 8 16 16 C 1.55129 * 101.48377 * 324.33664 * 5 4 2 17 17 N 1.47018 * 109.88190 * 121.01714 * 2 1 3 18 18 C 1.34784 * 125.64722 * 300.59626 * 17 2 1 19 19 O 1.21498 * 120.00079 * 359.97438 * 18 17 2 20 20 C 1.48229 * 119.99721 * 179.97438 * 18 17 2 21 21 C 1.40575 * 119.74797 * 179.97438 * 20 18 17 22 22 N 1.31257 * 120.57182 * 179.97438 * 21 20 18 23 23 C 1.33782 * 119.80744 * 0.03015 * 22 21 20 24 24 C 1.40543 * 120.99476 * 179.97438 * 23 22 21 25 25 C 1.36079 * 119.75473 * 180.02562 * 24 23 22 26 26 C 1.39481 * 121.00832 * 359.97438 * 25 24 23 27 27 C 1.35982 * 120.98698 * 0.02562 * 26 25 24 28 28 C 1.40826 * 119.70294 * 0.02562 * 27 26 25 29 29 N 1.32167 * 119.75031 * 359.72424 * 20 18 17 30 30 H 1.08996 * 109.47453 * 300.43984 * 1 2 3 31 31 H 1.09003 * 109.47197 * 60.43394 * 1 2 3 32 32 H 1.08997 * 109.47202 * 180.43363 * 1 2 3 33 33 H 1.08996 * 110.72172 * 21.06555 * 4 2 1 34 34 H 1.08999 * 110.72179 * 144.34289 * 4 2 1 35 35 H 0.97006 * 120.00370 * 24.99715 * 7 5 4 36 36 H 0.97001 * 120.00477 * 179.97438 * 11 10 8 37 37 H 1.09005 * 110.49746 * 278.45477 * 16 5 4 38 38 H 1.08997 * 110.34301 * 156.05884 * 16 5 4 39 39 H 1.08003 * 119.71540 * 359.97438 * 21 20 18 40 40 H 1.08003 * 120.12558 * 0.03086 * 24 23 22 41 41 H 1.07991 * 119.49626 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.50689 * 179.97438 * 26 25 24 43 43 H 1.08008 * 120.15113 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 2.3575 -2.1680 -0.6903 6 1 1.4522 -2.7743 -0.6598 7 7 3.4018 -2.8278 -1.4778 8 6 3.4679 -4.1950 -1.5183 9 1 2.7505 -4.7868 -0.9694 10 6 4.4572 -4.8202 -2.2650 11 7 5.3312 -4.0990 -2.9344 12 14 4.5478 -6.6852 -2.3196 13 1 3.7250 -7.1879 -3.4489 14 1 5.9590 -7.1068 -2.5092 15 1 4.0315 -7.2434 -1.0441 16 6 2.8643 -1.8433 0.7394 17 7 2.0300 -0.7124 1.1849 18 6 1.7729 -0.3828 2.4662 19 8 1.0731 0.5781 2.7176 20 6 2.3439 -1.1925 3.5687 21 6 2.0728 -0.8437 4.9032 22 7 2.5697 -1.5497 5.8919 23 6 3.3415 -2.6104 5.6295 24 6 3.8869 -3.3835 6.6688 25 6 4.6690 -4.4571 6.3730 26 6 4.9401 -4.8059 5.0500 27 6 4.4310 -4.0829 4.0170 28 6 3.6178 -2.9642 4.2822 29 7 3.1001 -2.2400 3.2895 30 1 -0.3634 0.5206 0.8860 31 1 -0.3634 0.5071 -0.8939 32 1 -0.3633 -1.0276 0.0078 33 1 1.2962 -0.7905 -2.0200 34 1 2.9684 -0.2808 -1.6162 35 1 4.0464 -2.2963 -1.9707 36 1 6.0227 -4.5358 -3.4559 37 1 3.9148 -1.5533 0.7154 38 1 2.7218 -2.7016 1.3960 39 1 1.4503 0.0126 5.1168 40 1 3.6859 -3.1267 7.6983 41 1 5.0856 -5.0485 7.1748 42 1 5.5644 -5.6626 4.8430 43 1 4.6499 -4.3649 2.9976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988969428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:13 Heat of formation + Delta-G solvation = 62.951850 kcal Electronic energy + Delta-G solvation = -27444.488215 eV Core-core repulsion = 23683.561948 eV Total energy + Delta-G solvation = -3760.926266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67654 -39.88613 -37.83262 -37.14686 -35.11997 -34.19436 -31.95314 -31.34290 -30.87984 -30.54475 -28.34522 -26.10567 -25.34670 -24.76753 -23.82631 -22.46405 -22.18792 -20.34673 -19.58979 -18.52146 -18.32721 -17.36822 -17.04617 -16.14628 -15.78476 -15.58890 -15.09800 -15.00224 -14.54904 -14.46364 -14.14580 -13.89140 -13.46554 -13.29539 -13.00731 -12.98216 -12.43560 -12.19154 -12.13947 -11.98378 -11.95944 -11.88456 -11.79409 -11.69804 -11.20789 -10.97186 -10.68649 -10.64452 -10.26962 -10.12340 -9.98821 -9.77696 -9.25648 -9.18327 -8.91435 -8.79388 -8.37105 -7.08299 -5.86054 -3.16196 -0.13211 0.24329 1.67514 2.30342 2.94253 3.09959 3.37198 3.42955 3.44357 3.74505 3.88408 3.89015 4.05755 4.45999 4.55156 4.61455 4.73805 4.91382 5.02716 5.03341 5.16016 5.19432 5.24920 5.47603 5.58904 5.61775 5.65527 5.69248 5.85206 5.87255 5.91167 5.96079 6.10498 6.14277 6.22609 6.27179 6.34184 6.43259 6.47557 6.59340 6.75607 6.87896 6.99467 7.44570 7.62188 7.69951 8.16912 8.31657 9.43404 9.97670 10.32851 11.36050 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.004901 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.546817 B = 5711.925119 C = 8561.483414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.170 3.830 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.245 4.245 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.074 3.926 17 N -0.583 5.583 18 C 0.582 3.418 19 O -0.541 6.541 20 C 0.062 3.938 21 C 0.127 3.873 22 N -0.430 5.430 23 C 0.091 3.909 24 C -0.095 4.095 25 C -0.087 4.087 26 C -0.106 4.106 27 C -0.067 4.067 28 C 0.074 3.926 29 N -0.374 5.374 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.186 0.814 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 3.388 15.759 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.376 4.376 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.737 3.263 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.207 1.207 16 C -0.051 4.051 17 N -0.314 5.314 18 C 0.368 3.632 19 O -0.419 6.419 20 C -0.094 4.094 21 C -0.049 4.049 22 N -0.143 5.143 23 C -0.034 4.034 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.086 4.086 28 C -0.052 4.052 29 N -0.092 5.092 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.202 0.798 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.049 3.562 15.990 16.875 hybrid contribution 0.470 -0.886 -0.246 1.033 sum -3.579 2.676 15.744 16.366 Atomic orbital electron populations 1.22138 0.94768 1.02435 1.02604 1.21607 0.94571 0.96028 0.84419 0.90887 1.23051 1.01709 0.97417 0.95635 1.21409 0.92783 0.91086 0.88935 0.91566 1.42297 1.33233 1.04030 1.55449 1.19242 1.11025 0.82520 1.24785 0.91036 1.24741 0.97991 0.97824 0.99895 1.69655 1.18948 1.34098 1.35048 0.86217 0.76863 0.85498 0.77756 1.21636 1.21733 1.20686 1.23898 0.94179 0.87946 0.99083 1.48513 1.48269 1.30723 1.03937 1.17276 0.80992 0.83705 0.81242 1.90748 1.39405 1.28416 1.83303 1.22466 0.97377 0.94490 0.95117 1.23921 0.95238 0.98142 0.87585 1.68808 1.07026 1.04091 1.34365 1.19798 0.96149 0.94072 0.93351 1.20774 0.97423 0.94663 0.98564 1.21108 0.96364 0.96060 0.97147 1.21075 0.99429 0.99995 0.92136 1.21102 0.94133 0.91883 1.01476 1.19758 0.98828 0.97187 0.89453 1.69023 1.04014 1.02469 1.33688 0.91356 0.91733 0.92370 0.90077 0.90535 0.77888 0.93374 0.91344 0.88545 0.79759 0.84245 0.84606 0.84340 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.07 37.16 0.34 -1.83 16 2 C 0.14 2.02 3.49 -66.96 -0.23 1.79 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.17 6.14 -24.90 -0.15 -2.32 16 5 C 0.17 3.21 3.73 -65.67 -0.24 2.96 16 6 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.71 -16.65 5.24 -51.24 -0.27 -16.92 16 8 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.80 13.06 55.49 0.72 -26.07 16 12 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.07 1.32 5.66 -2.41 -0.01 1.31 16 17 N -0.58 -9.49 3.08 -163.84 -0.50 -10.00 16 18 C 0.58 9.53 7.63 -12.15 -0.09 9.44 16 19 O -0.54 -9.36 15.21 5.37 0.08 -9.27 16 20 C 0.06 0.95 6.73 -82.74 -0.56 0.39 16 21 C 0.13 1.72 10.75 -16.92 -0.18 1.54 16 22 N -0.43 -5.88 10.45 -10.53 -0.11 -5.99 16 23 C 0.09 1.21 6.60 -84.70 -0.56 0.65 16 24 C -0.09 -0.96 9.98 -39.49 -0.39 -1.36 16 25 C -0.09 -0.72 9.95 -39.89 -0.40 -1.12 16 26 C -0.11 -1.00 9.95 -39.93 -0.40 -1.40 16 27 C -0.07 -0.83 9.99 -39.41 -0.39 -1.22 16 28 C 0.07 1.06 6.60 -84.79 -0.56 0.50 16 29 N -0.37 -5.93 6.69 -7.39 -0.05 -5.98 16 30 H 0.07 0.98 6.73 -51.93 -0.35 0.63 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 34 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 35 H 0.39 9.66 7.76 -40.82 -0.32 9.34 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.10 1.79 5.86 -51.93 -0.30 1.48 16 39 H 0.19 2.13 7.62 -52.48 -0.40 1.73 16 40 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -30.54 359.16 -9.36 -39.91 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.54 Total: 10.10 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -4.08 Total: 2.48 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.21 Total: -64.96 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.54 -9.36 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988969428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.858 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds