Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.99648 * 2 1 4 4 C 1.54327 * 109.88037 * 121.08610 * 2 1 3 5 5 C 1.55165 * 102.94078 * 97.22745 * 4 2 1 6 6 H 1.09001 * 111.00003 * 277.43047 * 5 4 2 7 7 N 1.46496 * 111.00397 * 153.57581 * 5 4 2 8 8 C 1.36935 * 120.00087 * 155.00449 * 7 5 4 9 9 H 1.08005 * 119.99923 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00226 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00114 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99926 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47021 * 90.00243 * 12 10 8 14 14 H 1.48498 * 109.47373 * 210.00308 * 12 10 8 15 15 H 1.48500 * 109.47403 * 330.00276 * 12 10 8 16 16 C 1.54915 * 101.57980 * 35.50135 * 5 4 2 17 17 N 1.47022 * 109.88592 * 238.89791 * 2 1 3 18 18 C 1.34776 * 125.64758 * 59.55748 * 17 2 1 19 19 O 1.21544 * 119.99831 * 359.97438 * 18 17 2 20 20 C 1.47892 * 119.99776 * 180.02562 * 18 17 2 21 21 N 1.32134 * 120.03421 * 359.72913 * 20 18 17 22 22 C 1.31981 * 122.76751 * 179.69557 * 21 20 18 23 23 C 1.37778 * 121.72853 * 0.58399 * 22 21 20 24 24 C 1.40388 * 118.72708 * 359.71964 * 23 22 21 25 25 C 1.40648 * 122.27931 * 179.97438 * 24 23 22 26 26 C 1.36639 * 117.95637 * 180.02562 * 25 24 23 27 27 C 1.39397 * 119.92033 * 0.02562 * 26 25 24 28 28 N 1.31213 * 121.85798 * 0.02562 * 27 26 25 29 29 C 1.33255 * 121.21783 * 359.97438 * 28 27 26 30 30 H 1.08993 * 109.47167 * 298.90637 * 1 2 3 31 31 H 1.09000 * 109.46800 * 58.91140 * 1 2 3 32 32 H 1.09003 * 109.46659 * 178.90812 * 1 2 3 33 33 H 1.08993 * 110.72079 * 215.58901 * 4 2 1 34 34 H 1.09002 * 110.72173 * 338.86738 * 4 2 1 35 35 H 0.97002 * 120.00223 * 334.99627 * 7 5 4 36 36 H 0.97000 * 120.00028 * 179.97438 * 11 10 8 37 37 H 1.08997 * 110.36462 * 204.15099 * 16 5 4 38 38 H 1.08997 * 110.36247 * 81.82766 * 16 5 4 39 39 H 1.08002 * 119.13517 * 180.29811 * 22 21 20 40 40 H 1.08003 * 120.63616 * 179.74076 * 23 22 21 41 41 H 1.08007 * 121.02060 * 0.02562 * 25 24 23 42 42 H 1.07996 * 120.03944 * 180.02562 * 26 25 24 43 43 H 1.07997 * 119.07224 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7493 1.2429 5 6 2.3519 -2.1694 0.6927 6 1 1.4452 -2.7735 0.6607 7 7 3.3937 -2.8310 1.4821 8 6 3.4569 -4.1983 1.5234 9 1 2.7385 -4.7889 0.9743 10 6 4.4437 -4.8252 2.2717 11 7 4.5042 -6.1394 2.3118 12 14 5.6859 -3.8037 3.2219 13 1 5.1670 -3.5382 4.5877 14 1 6.9689 -4.5456 3.3154 15 1 5.9093 -2.5154 2.5181 16 6 2.8569 -1.8499 -0.7365 17 7 2.0301 -0.7142 -1.1838 18 6 1.7755 -0.3847 -2.4656 19 8 1.0770 0.5773 -2.7186 20 6 2.3450 -1.1945 -3.5643 21 7 3.1079 -2.2379 -3.2901 22 6 3.6388 -3.0007 -4.2272 23 6 3.4387 -2.7479 -5.5668 24 6 2.6430 -1.6515 -5.9350 25 6 2.3901 -1.3248 -7.2794 26 6 1.6033 -0.2378 -7.5375 27 6 1.0801 0.5080 -6.4824 28 7 1.3203 0.1991 -5.2299 29 6 2.0794 -0.8484 -4.9103 30 1 -0.3633 0.4967 0.8996 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0275 -0.0196 33 1 2.9656 -0.2830 1.6183 34 1 1.2917 -0.7888 2.0202 35 1 4.0388 -2.3006 1.9754 36 1 5.1940 -6.5775 2.8345 37 1 2.7090 -2.7082 -1.3918 38 1 3.9092 -1.5667 -0.7125 39 1 4.2499 -3.8424 -3.9365 40 1 3.8850 -3.3813 -6.3191 41 1 2.8051 -1.9150 -8.0832 42 1 1.3871 0.0431 -8.5576 43 1 0.4603 1.3647 -6.7020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988980201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = 73.404000 kcal Electronic energy + Delta-G solvation = -27458.607256 eV Core-core repulsion = 23698.134229 eV Total energy + Delta-G solvation = -3760.473027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48719 -39.72782 -38.14401 -37.28480 -34.24975 -33.93570 -32.08361 -31.48219 -31.37850 -30.28081 -28.71581 -25.80976 -25.28628 -24.31246 -24.01134 -23.25574 -21.56045 -20.22712 -19.55659 -18.60023 -17.75082 -17.57349 -17.27224 -16.38407 -15.70517 -15.46806 -15.07241 -14.87568 -14.56904 -14.30162 -13.99265 -13.70597 -13.52949 -13.39231 -13.18260 -13.02965 -12.78789 -12.68196 -12.45631 -12.31385 -11.84911 -11.80237 -11.45087 -11.06880 -11.00842 -10.83599 -10.56958 -10.30983 -10.04369 -10.01852 -9.73080 -9.60662 -9.57596 -9.26303 -8.88885 -8.66544 -8.20643 -7.31156 -5.79503 -3.16109 -0.24344 0.46436 1.44686 2.60472 3.06641 3.19230 3.36772 3.39766 3.44796 3.95317 3.98396 4.07328 4.20670 4.34469 4.47933 4.53133 4.57049 4.86151 4.93077 5.10266 5.15853 5.20100 5.24813 5.31608 5.39023 5.42563 5.58994 5.62883 5.67721 5.82013 5.88429 5.92929 5.97064 6.03861 6.22294 6.28866 6.32306 6.34648 6.51624 6.67888 6.85994 6.88250 7.50632 7.70451 7.85339 7.96659 8.39269 8.44821 9.16765 9.89042 10.08010 11.38450 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003611 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.855356 B = 7752.238339 C = 9167.335404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.071 0.929 4 C -0.142 4.142 5 C 0.174 3.826 6 H 0.074 0.926 7 N -0.736 5.736 8 C -0.246 4.246 9 H 0.092 0.908 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.276 1.276 16 C 0.078 3.922 17 N -0.592 5.592 18 C 0.576 3.424 19 O -0.508 6.508 20 C 0.146 3.854 21 N -0.426 5.426 22 C 0.080 3.920 23 C -0.127 4.127 24 C -0.084 4.084 25 C -0.063 4.063 26 C -0.159 4.159 27 C 0.127 3.873 28 N -0.420 5.420 29 C 0.105 3.895 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.363 0.637 36 H 0.260 0.740 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 11.553 -19.331 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.181 4.181 5 C 0.063 3.937 6 H 0.092 0.908 7 N -0.377 5.377 8 C -0.375 4.375 9 H 0.110 0.890 10 C -0.189 4.189 11 N -0.579 5.579 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.202 1.202 16 C -0.047 4.047 17 N -0.326 5.326 18 C 0.361 3.639 19 O -0.382 6.382 20 C -0.008 4.008 21 N -0.138 5.138 22 C -0.066 4.066 23 C -0.148 4.148 24 C -0.091 4.091 25 C -0.090 4.090 26 C -0.180 4.180 27 C -0.047 4.047 28 N -0.128 5.128 29 C -0.020 4.020 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.197 0.803 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.187 0.813 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.202 11.975 -17.902 22.157 hybrid contribution 1.405 0.113 -1.010 1.734 sum -3.797 12.088 -18.912 22.764 Atomic orbital electron populations 1.22137 0.94839 1.02466 1.02484 1.21516 0.94556 0.95861 0.84418 0.91101 1.23077 1.01593 0.97406 0.96054 1.21352 0.92558 0.90897 0.88917 0.90804 1.42647 1.33964 1.04378 1.56716 1.19086 1.12438 0.80597 1.25415 0.89019 1.24658 0.98815 0.95281 1.00099 1.69699 1.36203 1.06896 1.45123 0.86578 0.81823 0.79771 0.80521 1.21045 1.21759 1.20243 1.23673 0.94123 0.88362 0.98528 1.48468 1.49485 1.30704 1.03909 1.17212 0.81528 0.84194 0.80943 1.90811 1.37471 1.27189 1.82695 1.21525 0.95038 0.93063 0.91124 1.67839 1.05753 1.02932 1.37308 1.22830 0.97152 0.98270 0.88377 1.22409 0.97642 0.96459 0.98287 1.18972 0.98770 0.96768 0.94625 1.21415 0.96201 0.96510 0.94832 1.22094 0.98282 0.96203 1.01388 1.23298 0.95748 0.98210 0.87484 1.68304 1.10807 1.13408 1.20236 1.19451 0.96177 0.93035 0.93325 0.91922 0.91318 0.92341 0.90911 0.89940 0.80339 0.93026 0.88133 0.91740 0.81261 0.83626 0.83795 0.84057 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.05 37.16 0.34 -1.94 16 2 C 0.14 2.14 3.49 -66.95 -0.23 1.91 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.21 6.14 -24.89 -0.15 -2.36 16 5 C 0.17 3.30 3.71 -65.78 -0.24 3.06 16 6 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 7 N -0.74 -16.76 5.05 -51.34 -0.26 -17.02 16 8 C -0.25 -6.68 10.44 -15.06 -0.16 -6.84 16 9 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 10 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 11 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 12 Si 0.88 21.57 27.73 -169.99 -4.71 16.85 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 16 C 0.08 1.42 5.64 -2.53 -0.01 1.41 16 17 N -0.59 -10.14 3.08 -164.10 -0.51 -10.64 16 18 C 0.58 10.34 7.62 -12.31 -0.09 10.25 16 19 O -0.51 -9.86 14.12 5.33 0.08 -9.78 16 20 C 0.15 2.40 6.78 -82.55 -0.56 1.84 16 21 N -0.43 -6.62 6.56 -9.55 -0.06 -6.68 16 22 C 0.08 0.96 11.12 -17.66 -0.20 0.77 16 23 C -0.13 -1.25 9.93 -38.94 -0.39 -1.64 16 24 C -0.08 -0.96 5.75 -106.79 -0.61 -1.57 16 25 C -0.06 -0.51 9.94 -39.25 -0.39 -0.90 16 26 C -0.16 -1.16 10.03 -39.73 -0.40 -1.56 16 27 C 0.13 1.27 11.14 -17.38 -0.19 1.07 16 28 N -0.42 -6.16 8.49 -10.75 -0.09 -6.26 16 29 C 0.10 1.56 6.61 -84.62 -0.56 1.00 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.06 6.77 -51.93 -0.35 0.71 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 34 H 0.08 1.17 7.83 -51.93 -0.41 0.77 16 35 H 0.36 8.14 5.63 -40.82 -0.23 7.91 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.91 5.91 -51.93 -0.31 1.61 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -34.59 354.10 -8.93 -43.52 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.53 Total: 7.87 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.95 Total: 4.60 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -0.14 Total: -68.39 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.59 -8.93 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988980201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.927 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds