Wall clock time and date at job start Tue Mar 31 2020 14:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.31999 * 2 1 4 4 C 1.54908 * 110.36981 * 122.23433 * 2 1 3 5 5 C 1.55149 * 101.58007 * 155.95975 * 4 2 1 6 6 H 1.09003 * 110.72177 * 83.04390 * 5 4 2 7 7 N 1.46508 * 110.72302 * 206.13682 * 5 4 2 8 8 C 1.36932 * 120.00162 * 205.00300 * 7 5 4 9 9 H 1.07995 * 120.00127 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99742 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00094 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 119.99996 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46854 * 90.00000 * 12 10 8 14 14 H 1.48495 * 109.47336 * 210.00040 * 12 10 8 15 15 H 1.48507 * 109.47329 * 330.00579 * 12 10 8 16 16 C 1.54327 * 102.94640 * 324.49918 * 5 4 2 17 17 N 1.47025 * 107.26743 * 22.19670 * 16 5 4 18 18 C 1.34776 * 125.64548 * 181.02749 * 17 16 5 19 19 O 1.21544 * 119.99570 * 180.02562 * 18 17 16 20 20 C 1.47904 * 120.00205 * 0.03647 * 18 17 16 21 21 N 1.32376 * 120.64030 * 354.73578 * 20 18 17 22 22 N 1.28090 * 123.18517 * 180.02562 * 21 20 18 23 23 C 1.31794 * 123.49652 * 0.02562 * 22 21 20 24 24 C 1.40409 * 119.14055 * 359.97438 * 23 22 21 25 25 C 1.40223 * 122.74312 * 180.02562 * 24 23 22 26 26 C 1.36266 * 119.36681 * 179.19654 * 25 24 23 27 27 C 1.39372 * 121.07531 * 0.77576 * 26 25 24 28 28 C 1.36363 * 121.08669 * 359.49475 * 27 26 25 29 29 C 1.39842 * 119.42033 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47319 * 297.75731 * 1 2 3 31 31 H 1.08999 * 109.47270 * 57.76581 * 1 2 3 32 32 H 1.09000 * 109.46839 * 177.76213 * 1 2 3 33 33 H 1.09000 * 110.99973 * 37.88522 * 4 2 1 34 34 H 1.08994 * 111.00486 * 274.03706 * 4 2 1 35 35 H 0.97003 * 119.98981 * 25.00176 * 7 5 4 36 36 H 0.96999 * 120.00489 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.88393 * 141.60656 * 16 5 4 38 38 H 1.09002 * 109.88417 * 262.77884 * 16 5 4 39 39 H 1.07997 * 120.42994 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.31357 * 359.97438 * 25 24 23 41 41 H 1.08007 * 119.46332 * 180.24954 * 26 25 24 42 42 H 1.07996 * 119.45637 * 179.46951 * 27 26 25 43 43 H 1.08007 * 120.29142 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7746 1.2284 5 6 3.4789 -1.1964 0.7364 6 1 4.1949 -0.3867 0.8777 7 7 3.9275 -2.4086 1.4261 8 6 5.2658 -2.6699 1.5509 9 1 5.9908 -1.9825 1.1406 10 6 5.6908 -3.8183 2.2048 11 7 4.8073 -4.6562 2.7044 12 14 7.5164 -4.1751 2.3745 13 1 8.0242 -3.5702 3.6322 14 1 7.7327 -5.6438 2.4091 15 1 8.2440 -3.5947 1.2173 16 6 3.2524 -1.4743 -0.7646 17 7 2.0454 -0.7379 -1.1676 18 6 1.5007 -0.7371 -2.4004 19 8 0.4970 -0.0880 -2.6208 20 6 2.1241 -1.5264 -3.4848 21 7 3.2727 -2.1542 -3.2878 22 7 3.8554 -2.8500 -4.1916 23 6 3.3741 -3.0123 -5.4078 24 6 2.1587 -2.3980 -5.7497 25 6 1.5780 -2.5206 -7.0201 26 6 0.3871 -1.9082 -7.2724 27 6 -0.2534 -1.1500 -6.2940 28 6 0.2860 -1.0053 -5.0500 29 6 1.5017 -1.6287 -4.7517 30 1 -0.3634 0.4786 0.9094 31 1 -0.3634 0.5481 -0.8693 32 1 -0.3633 -1.0269 -0.0401 33 1 1.4523 -1.6476 1.4413 34 1 2.1381 -0.1247 2.1007 35 1 3.2762 -3.0261 1.7943 36 1 5.1041 -5.4589 3.1611 37 1 4.1095 -1.1243 -1.3400 38 1 3.1062 -2.5424 -0.9259 39 1 3.9076 -3.6100 -6.1319 40 1 2.0637 -3.1053 -7.7874 41 1 -0.0635 -2.0049 -8.2492 42 1 -1.1923 -0.6688 -6.5251 43 1 -0.2213 -0.4144 -4.3016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989162760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:07 Heat of formation + Delta-G solvation = 74.082300 kcal Electronic energy + Delta-G solvation = -27448.158928 eV Core-core repulsion = 23687.715314 eV Total energy + Delta-G solvation = -3760.443614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63720 -39.80773 -38.22634 -37.42856 -34.17225 -33.64910 -31.98660 -31.80727 -31.30604 -30.29232 -28.39567 -26.03051 -25.21808 -24.42272 -23.87011 -23.20654 -21.80718 -20.24435 -19.64935 -18.44534 -18.19820 -17.24447 -16.81656 -16.37384 -16.13182 -15.69175 -15.12815 -14.84966 -14.45101 -14.27812 -14.03138 -13.82139 -13.63532 -13.34082 -13.21190 -12.79347 -12.68287 -12.48910 -12.12721 -11.98062 -11.90939 -11.56995 -11.49548 -11.20388 -10.88836 -10.75401 -10.66161 -10.58740 -10.24464 -9.99076 -9.74855 -9.67785 -9.61178 -9.46968 -8.91298 -8.72925 -8.34819 -7.01762 -5.77538 -3.07682 -0.19627 0.40750 1.37800 2.52045 2.92140 3.01508 3.45748 3.51483 3.53307 3.79817 3.83021 4.16959 4.21900 4.34965 4.46662 4.59789 4.75092 4.79548 4.95501 5.05400 5.15234 5.22992 5.27184 5.39138 5.48595 5.52985 5.62336 5.70105 5.77424 5.83667 5.91706 5.97090 6.07717 6.12343 6.15199 6.19376 6.36682 6.40700 6.47327 6.50352 6.67694 6.71795 6.97033 7.67316 7.73082 8.12929 8.39804 8.66143 9.51908 10.05202 10.40129 11.44658 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.003674 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.914496 B = 7618.961259 C = 9308.385054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.169 3.831 6 H 0.068 0.932 7 N -0.711 5.711 8 C -0.244 4.244 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.931 5.931 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.280 1.280 16 C 0.082 3.918 17 N -0.580 5.580 18 C 0.587 3.413 19 O -0.542 6.542 20 C 0.068 3.932 21 N -0.210 5.210 22 N -0.260 5.260 23 C 0.097 3.903 24 C -0.088 4.088 25 C -0.096 4.096 26 C -0.099 4.099 27 C -0.106 4.106 28 C -0.089 4.089 29 C -0.046 4.046 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.180 0.820 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 7.861 -18.825 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.056 3.944 6 H 0.086 0.914 7 N -0.350 5.350 8 C -0.375 4.375 9 H 0.091 0.909 10 C -0.206 4.206 11 N -0.579 5.579 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.205 1.205 16 C -0.043 4.043 17 N -0.310 5.310 18 C 0.373 3.627 19 O -0.421 6.421 20 C -0.089 4.089 21 N -0.046 5.046 22 N -0.091 5.091 23 C -0.077 4.077 24 C -0.095 4.095 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.108 4.108 29 C -0.054 4.054 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.196 0.804 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.927 7.796 -17.784 21.808 hybrid contribution -0.174 -0.440 -1.009 1.114 sum -10.101 7.356 -18.793 22.568 Atomic orbital electron populations 1.22138 0.94083 1.02736 1.02883 1.21996 0.94909 0.95515 0.84422 0.90394 1.23201 0.98188 1.00325 0.96005 1.21272 0.92988 0.91215 0.88898 0.91358 1.42357 1.05276 1.22292 1.65096 1.19266 0.83299 1.04596 1.30300 0.90886 1.24749 0.97659 0.97309 1.00844 1.69660 1.32246 1.13446 1.42558 0.86183 0.84988 0.77196 0.77803 1.21728 1.21786 1.20550 1.23541 0.84705 0.97103 0.98943 1.48573 1.28278 1.46279 1.07915 1.17065 0.83369 0.81185 0.81051 1.90530 1.25363 1.44930 1.81287 1.23009 0.94417 0.97697 0.93768 1.73191 1.05870 1.01991 1.23532 1.72807 1.26129 1.10869 0.99299 1.24878 0.92113 0.94841 0.95912 1.18935 0.96440 0.98757 0.95365 1.20938 0.95982 0.99854 0.94855 1.21137 0.94918 0.96055 0.99760 1.21244 1.00237 0.97852 0.93204 1.22036 0.93491 0.97084 0.98212 1.18616 0.96392 0.97651 0.92738 0.92039 0.90080 0.92692 0.90469 0.89966 0.77927 0.93451 0.90957 0.90068 0.80353 0.84281 0.85089 0.84976 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.60 37.16 0.32 -1.84 16 2 C 0.13 1.98 3.76 -66.42 -0.25 1.73 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.20 6.13 -24.59 -0.15 -2.35 16 5 C 0.17 3.28 3.61 -66.09 -0.24 3.04 16 6 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -17.41 5.15 -51.65 -0.27 -17.68 16 8 C -0.24 -6.66 9.96 -15.06 -0.15 -6.81 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 11 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 12 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.08 1.56 5.17 -3.06 -0.02 1.54 16 17 N -0.58 -9.71 3.24 -164.12 -0.53 -10.24 16 18 C 0.59 9.82 7.60 -12.30 -0.09 9.72 16 19 O -0.54 -8.90 11.31 5.33 0.06 -8.84 16 20 C 0.07 1.12 6.85 -82.43 -0.56 0.55 16 21 N -0.21 -3.73 8.10 33.56 0.27 -3.46 16 22 N -0.26 -4.24 11.41 30.90 0.35 -3.89 16 23 C 0.10 1.16 11.20 -16.75 -0.19 0.97 16 24 C -0.09 -1.02 5.75 -106.85 -0.61 -1.63 16 25 C -0.10 -0.78 9.84 -39.55 -0.39 -1.17 16 26 C -0.10 -0.73 9.95 -39.87 -0.40 -1.13 16 27 C -0.11 -0.92 9.95 -39.84 -0.40 -1.32 16 28 C -0.09 -1.06 9.27 -39.66 -0.37 -1.43 16 29 C -0.05 -0.64 5.77 -106.56 -0.61 -1.26 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.15 6.09 -51.93 -0.32 0.83 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.30 7.93 -51.93 -0.41 0.88 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.39 10.09 7.76 -40.82 -0.32 9.78 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.41 7.44 -51.93 -0.39 1.02 16 38 H 0.08 1.75 7.47 -51.93 -0.39 1.36 16 39 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.17 2.23 5.12 -52.48 -0.27 1.96 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -32.45 352.89 -8.74 -41.19 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.44 Total: 9.17 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -4.21 Total: -1.74 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.55 Total: -62.46 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.06 Total: -8.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.45 -8.74 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.274 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds