Wall clock time and date at job start Tue Mar 31 2020 14:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.99809 * 2 1 4 4 C 1.54326 * 109.88094 * 121.09444 * 2 1 3 5 5 C 1.55160 * 102.94144 * 141.60981 * 4 2 1 6 6 H 1.08999 * 111.00702 * 82.56753 * 5 4 2 7 7 N 1.46497 * 111.00421 * 206.38890 * 5 4 2 8 8 C 1.36933 * 119.99782 * 205.00095 * 7 5 4 9 9 H 1.07998 * 120.00193 * 359.97438 * 8 7 5 10 10 C 1.38818 * 120.00051 * 180.02562 * 8 7 5 11 11 N 1.31612 * 119.99951 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00102 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47478 * 89.99764 * 12 10 8 14 14 H 1.48501 * 109.47513 * 209.99963 * 12 10 8 15 15 H 1.48505 * 109.47190 * 329.99483 * 12 10 8 16 16 C 1.55137 * 101.48181 * 324.33177 * 5 4 2 17 17 N 1.47017 * 109.87852 * 238.90276 * 2 1 3 18 18 C 1.34775 * 125.64987 * 61.61157 * 17 2 1 19 19 O 1.21555 * 119.99907 * 5.86995 * 18 17 2 20 20 C 1.47870 * 120.00105 * 185.87833 * 18 17 2 21 21 C 1.40634 * 120.26082 * 204.27642 * 20 18 17 22 22 N 1.30854 * 121.65890 * 179.97438 * 21 20 18 23 23 C 1.33589 * 121.58310 * 359.97438 * 22 21 20 24 24 C 1.40648 * 121.63366 * 180.02562 * 23 22 21 25 25 N 1.31147 * 120.03704 * 179.71851 * 24 23 22 26 26 C 1.32490 * 122.89376 * 0.25150 * 25 24 23 27 27 C 1.36311 * 121.71428 * 0.02562 * 26 25 24 28 28 C 1.40603 * 118.64650 * 359.97438 * 27 26 25 29 29 C 1.38991 * 120.25957 * 24.75797 * 20 18 17 30 30 H 1.08994 * 109.47147 * 179.64300 * 1 2 3 31 31 H 1.09000 * 109.46791 * 299.64412 * 1 2 3 32 32 H 1.08996 * 109.46717 * 59.63875 * 1 2 3 33 33 H 1.08996 * 110.72361 * 259.97374 * 4 2 1 34 34 H 1.09002 * 110.71662 * 23.24655 * 4 2 1 35 35 H 0.97001 * 120.00289 * 24.99815 * 7 5 4 36 36 H 0.97001 * 120.00243 * 180.02562 * 11 10 8 37 37 H 1.08996 * 110.49576 * 278.44958 * 16 5 4 38 38 H 1.09006 * 110.33801 * 156.05977 * 16 5 4 39 39 H 1.07995 * 119.17094 * 359.97375 * 21 20 18 40 40 H 1.07994 * 119.97707 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.13976 * 180.02562 * 26 25 24 42 42 H 1.07994 * 120.67545 * 180.02562 * 27 26 25 43 43 H 1.08003 * 121.11136 * 359.48558 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 3.2877 -1.5143 0.6924 6 1 4.1655 -0.8689 0.6603 7 7 3.5537 -2.7191 1.4822 8 6 4.8170 -3.2457 1.5232 9 1 5.6172 -2.7731 0.9731 10 6 5.0691 -4.3877 2.2712 11 7 4.0938 -4.9640 2.9412 12 14 6.7923 -5.1064 2.3266 13 1 7.5447 -4.5021 3.4552 14 1 6.7095 -6.5768 2.5178 15 1 7.4927 -4.8120 1.0506 16 6 2.8098 -1.8826 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.2339 0.6793 -2.7191 20 6 2.2607 -1.2427 -3.5637 21 6 2.5093 -0.7112 -4.8417 22 7 2.9116 -1.4650 -5.8327 23 6 3.1066 -2.7776 -5.6789 24 6 3.5396 -3.5888 -6.7431 25 7 3.7264 -4.8733 -6.5556 26 6 3.5202 -5.4678 -5.3896 27 6 3.0949 -4.7732 -4.2965 28 6 2.8729 -3.3904 -4.4210 29 6 2.4349 -2.6039 -3.3433 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3632 0.5194 -0.8867 33 1 2.3529 -0.0460 2.0201 34 1 1.3051 -1.4459 1.6182 35 1 2.8349 -3.1438 1.9761 36 1 4.2700 -5.7618 3.4641 37 1 2.1801 -2.7718 -0.7114 38 1 3.6655 -2.0413 -1.3932 39 1 2.3645 0.3458 -5.0096 40 1 3.7222 -3.1530 -7.7142 41 1 3.6937 -6.5302 -5.3030 42 1 2.9326 -5.2748 -3.3540 43 1 2.2521 -3.0399 -2.3722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989177108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:47 Heat of formation + Delta-G solvation = 55.876616 kcal Electronic energy + Delta-G solvation = -27303.971980 eV Core-core repulsion = 23542.738908 eV Total energy + Delta-G solvation = -3761.233072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49362 -40.12347 -38.22022 -37.35022 -34.41517 -34.15304 -32.38860 -31.55954 -31.14218 -30.38004 -28.58005 -26.10474 -25.33993 -24.76758 -23.95129 -22.85208 -22.11745 -20.51082 -19.68480 -18.67484 -17.74755 -17.43516 -17.27297 -16.57645 -16.16847 -15.38834 -15.23068 -15.04383 -14.62192 -14.35442 -14.17386 -13.89743 -13.69548 -13.50884 -13.22046 -13.10348 -12.86842 -12.82102 -12.59228 -12.35673 -12.26371 -11.82671 -11.28575 -11.19027 -11.04114 -10.83498 -10.76233 -10.44219 -10.27016 -10.15577 -10.04386 -9.89189 -9.60194 -9.49915 -9.15432 -8.68207 -8.57106 -7.24097 -5.98347 -3.30120 -0.14533 0.30201 1.53727 2.39213 2.88581 3.10756 3.30719 3.37287 3.38158 3.84216 3.88351 4.10785 4.21358 4.28579 4.39961 4.48942 4.51226 4.71233 4.91245 4.98681 5.09395 5.11106 5.20599 5.32246 5.35516 5.41075 5.47181 5.51356 5.63249 5.66208 5.70371 5.81337 5.86042 5.96169 6.02709 6.09936 6.17642 6.27253 6.29961 6.33052 6.47833 6.65565 7.41494 7.50939 7.54873 7.70279 8.07782 8.18855 9.31302 9.82863 10.17938 11.23175 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008731 B = 0.004639 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.210657 B = 6034.658647 C = 8693.157930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.071 0.929 7 N -0.710 5.710 8 C -0.254 4.254 9 H 0.073 0.927 10 C -0.004 4.004 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.063 3.937 17 N -0.601 5.601 18 C 0.575 3.425 19 O -0.539 6.539 20 C -0.165 4.165 21 C 0.181 3.819 22 N -0.462 5.462 23 C 0.081 3.919 24 C 0.157 3.843 25 N -0.468 5.468 26 C 0.069 3.931 27 C -0.127 4.127 28 C -0.086 4.086 29 C -0.023 4.023 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 4.720 -12.175 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.089 0.911 7 N -0.349 5.349 8 C -0.385 4.385 9 H 0.090 0.910 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.206 1.206 16 C -0.062 4.062 17 N -0.334 5.334 18 C 0.363 3.637 19 O -0.417 6.417 20 C -0.172 4.172 21 C 0.007 3.993 22 N -0.171 5.171 23 C -0.042 4.042 24 C -0.016 4.016 25 N -0.177 5.177 26 C -0.073 4.073 27 C -0.147 4.147 28 C -0.093 4.093 29 C -0.049 4.049 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.191 0.809 40 H 0.190 0.810 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.935 4.817 -13.828 15.453 hybrid contribution 0.277 -0.603 1.843 1.958 sum -4.659 4.214 -11.986 13.532 Atomic orbital electron populations 1.22132 0.94913 1.02275 1.02592 1.21577 0.94288 0.96363 0.84204 0.90528 1.23075 0.99138 0.99746 0.95741 1.21350 0.94876 0.89605 0.88151 0.91131 1.42321 1.09682 1.27713 1.55197 1.19240 0.86804 1.07020 1.25398 0.90953 1.24757 0.97635 0.98188 0.99530 1.69648 1.30862 1.22305 1.34608 0.86213 0.83858 0.78348 0.77877 1.21458 1.21601 1.20625 1.23887 0.94354 0.87434 1.00565 1.48522 1.51559 1.28878 1.04394 1.17623 0.79632 0.85109 0.81329 1.90765 1.43306 1.24280 1.83379 1.21090 1.04889 0.94603 0.96579 1.23116 0.89493 1.00504 0.86191 1.67973 1.12591 1.04192 1.32325 1.20080 0.98946 0.91506 0.93696 1.23098 0.92688 0.87949 0.97893 1.67439 1.13424 1.11430 1.25392 1.22305 0.96479 1.00843 0.87704 1.22095 0.98704 0.92674 1.01265 1.18950 1.00512 0.95348 0.94480 1.22686 0.90249 0.92681 0.99326 0.92461 0.91535 0.91719 0.90036 0.90243 0.77770 0.93204 0.90926 0.90939 0.80906 0.81017 0.82164 0.83369 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.11 37.16 0.34 -1.63 16 2 C 0.14 1.84 3.43 -66.95 -0.23 1.61 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.93 6.12 -24.89 -0.15 -2.08 16 5 C 0.17 2.93 3.73 -65.66 -0.24 2.69 16 6 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 7 N -0.71 -15.44 5.24 -51.23 -0.27 -15.70 16 8 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 11 N -0.93 -25.69 13.06 55.49 0.72 -24.96 16 12 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 C 0.06 0.95 4.70 -2.41 -0.01 0.94 16 17 N -0.60 -8.52 3.06 -163.96 -0.50 -9.02 16 18 C 0.58 8.50 7.40 -12.32 -0.09 8.41 16 19 O -0.54 -9.04 15.86 5.32 0.08 -8.95 16 20 C -0.17 -2.21 5.68 -104.77 -0.60 -2.81 16 21 C 0.18 2.31 10.72 -17.06 -0.18 2.13 16 22 N -0.46 -6.06 10.33 -10.65 -0.11 -6.17 16 23 C 0.08 1.05 6.62 -84.81 -0.56 0.49 16 24 C 0.16 1.82 11.25 -16.93 -0.19 1.63 16 25 N -0.47 -5.62 10.28 -13.11 -0.13 -5.76 16 26 C 0.07 0.75 11.08 -17.96 -0.20 0.55 16 27 C -0.13 -1.42 9.88 -39.38 -0.39 -1.81 16 28 C -0.09 -1.09 5.75 -106.80 -0.61 -1.70 16 29 C -0.02 -0.30 7.99 -38.48 -0.31 -0.60 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.87 7.08 -51.93 -0.37 0.50 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 35 H 0.39 9.01 7.76 -40.82 -0.32 8.69 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.07 1.09 6.85 -51.93 -0.36 0.73 16 38 H 0.07 1.10 6.83 -51.93 -0.35 0.74 16 39 H 0.17 1.94 7.82 -52.49 -0.41 1.53 16 40 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.17 2.00 4.68 -52.48 -0.25 1.76 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -29.55 357.33 -8.90 -38.45 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.38 Total: 9.81 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.68 Total: 1.14 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.29 Total: -61.61 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.55 -8.90 -38.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989177108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.328 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds