Wall clock time and date at job start Tue Mar 31 2020 14:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.99809 * 2 1 4 4 C 1.54326 * 109.88094 * 121.09444 * 2 1 3 5 5 C 1.55160 * 102.94144 * 141.60981 * 4 2 1 6 6 H 1.08999 * 111.00702 * 82.56753 * 5 4 2 7 7 N 1.46497 * 111.00421 * 206.38890 * 5 4 2 8 8 C 1.36933 * 119.99782 * 205.00095 * 7 5 4 9 9 H 1.07998 * 120.00193 * 359.97438 * 8 7 5 10 10 C 1.38818 * 120.00051 * 180.02562 * 8 7 5 11 11 N 1.31612 * 119.99951 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00102 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47478 * 89.99764 * 12 10 8 14 14 H 1.48501 * 109.47513 * 209.99963 * 12 10 8 15 15 H 1.48505 * 109.47190 * 329.99483 * 12 10 8 16 16 C 1.55137 * 101.48181 * 324.33177 * 5 4 2 17 17 N 1.47017 * 109.87852 * 238.90276 * 2 1 3 18 18 C 1.34775 * 125.64987 * 61.61157 * 17 2 1 19 19 O 1.21555 * 119.99907 * 5.86995 * 18 17 2 20 20 C 1.47870 * 120.00105 * 185.87833 * 18 17 2 21 21 C 1.40634 * 120.26082 * 204.27642 * 20 18 17 22 22 N 1.30854 * 121.65890 * 179.97438 * 21 20 18 23 23 C 1.33589 * 121.58310 * 359.97438 * 22 21 20 24 24 C 1.40648 * 121.63366 * 180.02562 * 23 22 21 25 25 N 1.31147 * 120.03704 * 179.71851 * 24 23 22 26 26 C 1.32490 * 122.89376 * 0.25150 * 25 24 23 27 27 C 1.36311 * 121.71428 * 0.02562 * 26 25 24 28 28 C 1.40603 * 118.64650 * 359.97438 * 27 26 25 29 29 C 1.38991 * 120.25957 * 24.75797 * 20 18 17 30 30 H 1.08994 * 109.47147 * 179.64300 * 1 2 3 31 31 H 1.09000 * 109.46791 * 299.64412 * 1 2 3 32 32 H 1.08996 * 109.46717 * 59.63875 * 1 2 3 33 33 H 1.08996 * 110.72361 * 259.97374 * 4 2 1 34 34 H 1.09002 * 110.71662 * 23.24655 * 4 2 1 35 35 H 0.97001 * 120.00289 * 24.99815 * 7 5 4 36 36 H 0.97001 * 120.00243 * 180.02562 * 11 10 8 37 37 H 1.08996 * 110.49576 * 278.44958 * 16 5 4 38 38 H 1.09006 * 110.33801 * 156.05977 * 16 5 4 39 39 H 1.07995 * 119.17094 * 359.97375 * 21 20 18 40 40 H 1.07994 * 119.97707 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.13976 * 180.02562 * 26 25 24 42 42 H 1.07994 * 120.67545 * 180.02562 * 27 26 25 43 43 H 1.08003 * 121.11136 * 359.48558 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2428 5 6 3.2877 -1.5143 0.6924 6 1 4.1655 -0.8689 0.6603 7 7 3.5537 -2.7191 1.4822 8 6 4.8170 -3.2457 1.5232 9 1 5.6172 -2.7731 0.9731 10 6 5.0691 -4.3877 2.2712 11 7 4.0938 -4.9640 2.9412 12 14 6.7923 -5.1064 2.3266 13 1 7.5447 -4.5021 3.4552 14 1 6.7095 -6.5768 2.5178 15 1 7.4927 -4.8120 1.0506 16 6 2.8098 -1.8826 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.2339 0.6793 -2.7191 20 6 2.2607 -1.2427 -3.5637 21 6 2.5093 -0.7112 -4.8417 22 7 2.9116 -1.4650 -5.8327 23 6 3.1066 -2.7776 -5.6789 24 6 3.5396 -3.5888 -6.7431 25 7 3.7264 -4.8733 -6.5556 26 6 3.5202 -5.4678 -5.3896 27 6 3.0949 -4.7732 -4.2965 28 6 2.8729 -3.3904 -4.4210 29 6 2.4349 -2.6039 -3.3433 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3632 0.5194 -0.8867 33 1 2.3529 -0.0460 2.0201 34 1 1.3051 -1.4459 1.6182 35 1 2.8349 -3.1438 1.9761 36 1 4.2700 -5.7618 3.4641 37 1 2.1801 -2.7718 -0.7114 38 1 3.6655 -2.0413 -1.3932 39 1 2.3645 0.3458 -5.0096 40 1 3.7222 -3.1530 -7.7142 41 1 3.6937 -6.5302 -5.3030 42 1 2.9326 -5.2748 -3.3540 43 1 2.2521 -3.0399 -2.3722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989177108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:46 Heat of formation + Delta-G solvation = 37.832723 kcal Electronic energy + Delta-G solvation = -27304.754422 eV Core-core repulsion = 23542.738908 eV Total energy + Delta-G solvation = -3762.015513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47243 -41.25509 -39.26540 -38.53142 -36.03732 -35.17845 -33.47231 -33.19631 -32.14597 -31.33344 -30.11023 -27.20875 -26.43324 -25.84449 -25.56380 -23.81140 -23.27720 -21.86557 -20.76978 -19.69872 -19.28750 -18.65404 -18.27836 -17.73990 -17.34297 -16.73024 -16.25008 -16.15025 -15.93443 -15.48063 -15.35560 -15.24638 -14.93303 -14.76902 -14.37394 -14.25641 -14.13564 -13.84184 -13.56176 -13.47584 -13.41891 -13.05295 -12.88735 -12.81663 -12.39010 -12.15325 -12.05388 -11.94107 -11.74319 -11.52925 -11.35901 -11.05877 -10.95008 -10.56880 -10.50410 -9.77981 -9.58757 -9.05363 -7.95350 -5.24778 -1.10804 -0.65409 0.58792 1.35472 1.49629 1.51660 1.58189 1.74058 2.06564 2.55733 2.89633 2.92923 3.11757 3.24652 3.36136 3.41280 3.48710 3.54023 3.67123 3.79039 3.92855 3.94444 4.15475 4.18956 4.21077 4.29218 4.40535 4.47212 4.50099 4.58960 4.65632 4.72199 4.77935 4.83632 4.91299 5.03492 5.10179 5.17286 5.21630 5.34573 5.37369 5.45432 5.54644 6.25627 6.32715 6.48801 6.80284 6.91059 7.34754 8.04688 8.29472 9.26947 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008731 B = 0.004639 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.210657 B = 6034.658647 C = 8693.157930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.165 3.835 6 H 0.065 0.935 7 N -0.719 5.719 8 C -0.244 4.244 9 H 0.076 0.924 10 C -0.060 4.060 11 N -0.962 5.962 12 Si 0.961 3.039 13 H -0.291 1.291 14 H -0.297 1.297 15 H -0.271 1.271 16 C 0.079 3.921 17 N -0.599 5.599 18 C 0.578 3.422 19 O -0.560 6.560 20 C -0.175 4.175 21 C 0.178 3.822 22 N -0.467 5.467 23 C 0.066 3.934 24 C 0.156 3.844 25 N -0.479 5.479 26 C 0.069 3.931 27 C -0.131 4.131 28 C -0.098 4.098 29 C -0.019 4.019 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.379 0.621 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.185 0.815 40 H 0.193 0.807 41 H 0.188 0.812 42 H 0.164 0.836 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 4.814 -12.925 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.099 0.901 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.083 0.917 7 N -0.358 5.358 8 C -0.375 4.375 9 H 0.094 0.906 10 C -0.254 4.254 11 N -0.612 5.612 12 Si 0.791 3.209 13 H -0.218 1.218 14 H -0.224 1.224 15 H -0.196 1.196 16 C -0.047 4.047 17 N -0.331 5.331 18 C 0.367 3.633 19 O -0.440 6.440 20 C -0.181 4.181 21 C 0.003 3.997 22 N -0.176 5.176 23 C -0.057 4.057 24 C -0.017 4.017 25 N -0.188 5.188 26 C -0.073 4.073 27 C -0.152 4.152 28 C -0.105 4.105 29 C -0.045 4.045 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.212 0.788 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.202 0.798 40 H 0.210 0.790 41 H 0.205 0.795 42 H 0.181 0.819 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.753 4.953 -14.616 16.148 hybrid contribution 0.208 -0.589 2.009 2.104 sum -4.544 4.364 -12.607 14.094 Atomic orbital electron populations 1.22068 0.93786 1.02296 1.03011 1.21660 0.95146 0.96282 0.83360 0.90106 1.22972 0.97575 0.99573 0.96261 1.21497 0.96102 0.88165 0.88829 0.91670 1.42389 1.08459 1.28963 1.55974 1.19554 0.88009 1.06284 1.23671 0.90604 1.25382 1.00402 0.99225 1.00369 1.69773 1.32387 1.22817 1.36178 0.85332 0.80600 0.77056 0.77888 1.21809 1.22371 1.19625 1.23540 0.94443 0.87705 0.98979 1.48506 1.51347 1.28603 1.04669 1.17759 0.79142 0.84902 0.81525 1.90752 1.44352 1.25270 1.83630 1.21015 1.05921 0.94707 0.96463 1.23287 0.89406 1.01049 0.85947 1.67987 1.12787 1.04428 1.32380 1.20340 0.99397 0.91661 0.94307 1.23441 0.92043 0.87821 0.98422 1.67518 1.13702 1.11579 1.26006 1.22777 0.95336 1.02086 0.87144 1.22301 0.98600 0.92083 1.02186 1.19136 1.00780 0.96183 0.94425 1.22707 0.89812 0.92462 0.99516 0.92595 0.89474 0.92935 0.88870 0.90152 0.78769 0.93939 0.90717 0.91067 0.79838 0.79013 0.79526 0.81855 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.11 71.98 0.66 -2.82 16 2 C 0.14 3.44 3.43 45.34 0.16 3.60 16 3 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.13 -3.29 6.12 31.78 0.19 -3.10 16 5 C 0.16 5.41 3.73 46.46 0.17 5.58 16 6 H 0.07 2.22 8.09 -2.39 -0.02 2.20 16 7 N -0.72 -30.82 5.24 -316.00 -1.66 -32.48 16 8 C -0.24 -11.94 9.96 84.04 0.84 -11.10 16 9 H 0.08 3.60 7.83 -2.91 -0.02 3.58 16 10 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 11 N -0.96 -53.62 13.06 21.65 0.28 -53.34 16 12 Si 0.96 42.57 29.55 68.60 2.03 44.60 16 13 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 16 C 0.08 2.27 4.70 86.94 0.41 2.67 16 17 N -0.60 -16.26 3.06 -790.94 -2.42 -18.68 16 18 C 0.58 16.56 7.40 86.79 0.64 17.20 16 19 O -0.56 -18.34 15.86 -3.89 -0.06 -18.41 16 20 C -0.17 -4.54 5.68 -19.96 -0.11 -4.66 16 21 C 0.18 4.40 10.72 85.42 0.92 5.32 16 22 N -0.47 -11.83 10.33 -187.60 -1.94 -13.77 16 23 C 0.07 1.64 6.62 40.36 0.27 1.90 16 24 C 0.16 3.37 11.25 85.38 0.96 4.33 16 25 N -0.48 -10.67 10.28 -195.39 -2.01 -12.68 16 26 C 0.07 1.35 11.08 84.14 0.93 2.28 16 27 C -0.13 -2.72 9.88 22.40 0.22 -2.50 16 28 C -0.10 -2.39 5.75 -21.27 -0.12 -2.51 16 29 C -0.02 -0.46 7.99 22.98 0.18 -0.28 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.34 7.08 -2.39 -0.02 1.32 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.14 7.71 -2.39 -0.02 2.12 16 35 H 0.38 17.54 7.76 -92.71 -0.72 16.82 16 36 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.07 2.16 6.85 -2.39 -0.02 2.14 16 38 H 0.07 2.08 6.83 -2.38 -0.02 2.06 16 39 H 0.18 4.01 7.82 -2.91 -0.02 3.99 16 40 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 41 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.17 3.91 4.68 -2.91 -0.01 3.89 16 Total: -1.00 -61.78 357.33 1.34 -60.44 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.34 Total: 31.05 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.78 Total: 13.27 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -7.74 Total: -130.94 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.41 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -61.78 1.34 -60.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989177108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.276 kcal (2) G-P(sol) polarization free energy of solvation -61.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds