Wall clock time and date at job start Tue Mar 31 2020 14:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.87370 * 2 1 4 4 C 1.54323 * 110.00981 * 121.09874 * 2 1 3 5 5 C 1.55157 * 102.94476 * 141.68128 * 4 2 1 6 6 H 1.08998 * 111.00222 * 82.60577 * 5 4 2 7 7 N 1.46495 * 111.00404 * 206.42413 * 5 4 2 8 8 C 1.36940 * 119.99981 * 204.99875 * 7 5 4 9 9 H 1.08004 * 119.99853 * 359.97438 * 8 7 5 10 10 C 1.38806 * 120.00145 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00439 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00229 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46733 * 59.99508 * 12 10 8 14 14 H 1.48495 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46802 * 300.00057 * 12 10 8 16 16 C 1.55127 * 101.48384 * 324.33084 * 5 4 2 17 17 N 1.47018 * 109.87972 * 238.98034 * 2 1 3 18 18 C 1.34778 * 125.64832 * 61.45870 * 17 2 1 19 19 O 1.21501 * 120.00077 * 359.97438 * 18 17 2 20 20 C 1.48279 * 120.00191 * 179.97438 * 18 17 2 21 21 C 1.40369 * 119.19209 * 179.97438 * 20 18 17 22 22 C 1.36556 * 119.82894 * 179.97438 * 21 20 18 23 23 C 1.40556 * 118.06105 * 359.74908 * 22 21 20 24 24 C 1.40511 * 122.21090 * 179.68687 * 23 22 21 25 25 C 1.36264 * 118.68322 * 180.32176 * 24 23 22 26 26 N 1.32584 * 121.80212 * 0.25696 * 25 24 23 27 27 C 1.31112 * 122.87654 * 359.97438 * 26 25 24 28 28 C 1.40863 * 119.95929 * 0.02562 * 27 26 25 29 29 N 1.31901 * 119.18678 * 359.97438 * 20 18 17 30 30 H 1.08997 * 109.47313 * 179.56544 * 1 2 3 31 31 H 1.09006 * 109.47073 * 299.56331 * 1 2 3 32 32 H 1.08998 * 109.47242 * 59.56094 * 1 2 3 33 33 H 1.09004 * 110.72025 * 260.04376 * 4 2 1 34 34 H 1.09004 * 110.72316 * 23.31314 * 4 2 1 35 35 H 0.96997 * 120.00458 * 25.00034 * 7 5 4 36 36 H 0.96990 * 120.00531 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.49912 * 278.45859 * 16 5 4 38 38 H 1.08998 * 110.34209 * 156.05659 * 16 5 4 39 39 H 1.08003 * 120.08064 * 0.02562 * 21 20 18 40 40 H 1.07995 * 120.97010 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.66151 * 0.60475 * 24 23 22 42 42 H 1.08003 * 119.10069 * 180.23411 * 25 24 23 43 43 H 1.08002 * 120.02167 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2918 -1.5108 0.6894 6 1 4.1683 -0.8637 0.6572 7 7 3.5609 -2.7159 1.4778 8 6 4.8253 -3.2401 1.5171 9 1 5.6241 -2.7654 0.9665 10 6 5.0802 -4.3823 2.2636 11 7 4.1068 -4.9612 2.9342 12 14 6.8053 -5.0971 2.3178 13 1 7.7418 -4.0880 2.8745 14 1 6.8129 -6.3070 3.1787 15 1 7.2325 -5.4639 0.9437 16 6 2.8130 -1.8795 -0.7393 17 7 2.0299 -0.7125 -1.1849 18 6 1.8049 -0.3603 -2.4662 19 8 1.1368 0.6229 -2.7177 20 6 2.3727 -1.1727 -3.5691 21 6 2.1273 -0.7908 -4.8973 22 6 2.6443 -1.5292 -5.9230 23 6 3.4184 -2.6573 -5.6009 24 6 3.9866 -3.4820 -6.5865 25 6 4.7191 -4.5616 -6.1933 26 7 4.9025 -4.8527 -4.9128 27 6 4.3994 -4.1319 -3.9400 28 6 3.6252 -2.9930 -4.2361 29 7 3.0961 -2.2366 -3.2778 30 1 -0.3634 -1.0276 -0.0078 31 1 -0.3633 0.5071 0.8939 32 1 -0.3633 0.5206 -0.8860 33 1 2.3557 -0.0451 2.0190 34 1 1.3103 -1.4472 1.6179 35 1 2.8435 -3.1425 1.9719 36 1 4.2849 -5.7590 3.4561 37 1 2.1851 -2.7701 -0.7135 38 1 3.6681 -2.0360 -1.3969 39 1 1.5317 0.0854 -5.1074 40 1 2.4667 -1.2524 -6.9517 41 1 3.8494 -3.2620 -7.6349 42 1 5.1621 -5.1979 -6.9452 43 1 4.5784 -4.4113 -2.9122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989208708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:21 Heat of formation + Delta-G solvation = 61.353792 kcal Electronic energy + Delta-G solvation = -27432.645139 eV Core-core repulsion = 23671.649576 eV Total energy + Delta-G solvation = -3760.995563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48856 -39.94901 -38.16724 -37.22526 -34.27169 -34.04933 -32.00904 -31.52037 -31.29897 -30.34493 -28.38387 -25.96051 -25.29428 -24.58520 -23.78452 -22.84987 -22.05122 -20.27674 -19.60538 -18.44594 -17.78133 -17.34364 -17.24321 -16.32951 -15.95582 -15.37459 -15.06736 -14.97846 -14.54499 -14.38280 -14.05149 -13.90810 -13.54144 -13.48294 -13.19146 -13.00165 -12.74032 -12.51556 -12.30293 -12.23950 -12.11650 -11.69302 -11.15470 -11.10782 -11.05655 -10.82503 -10.64696 -10.28365 -10.22406 -10.02130 -9.77245 -9.71117 -9.53935 -9.46400 -8.90882 -8.69573 -8.33251 -7.04055 -5.81528 -3.11784 -0.14528 0.34083 1.57158 2.33114 3.00097 3.22822 3.43236 3.48482 3.48611 3.79083 3.90607 4.15144 4.26867 4.36927 4.45205 4.51803 4.58880 4.88245 4.98382 5.06432 5.17791 5.25408 5.28978 5.40413 5.50938 5.52789 5.61682 5.62579 5.78887 5.80120 5.85911 5.87706 6.08946 6.14450 6.20259 6.28403 6.35587 6.39499 6.51553 6.59496 6.80845 6.91631 7.35030 7.66317 7.72970 7.75454 8.21938 8.36189 9.48003 10.01915 10.37018 11.40467 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.004986 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.921584 B = 5614.763733 C = 8533.006430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.168 3.832 6 H 0.066 0.934 7 N -0.710 5.710 8 C -0.246 4.246 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.284 1.284 16 C 0.075 3.925 17 N -0.583 5.583 18 C 0.576 3.424 19 O -0.545 6.545 20 C 0.120 3.880 21 C -0.106 4.106 22 C -0.071 4.071 23 C -0.064 4.064 24 C -0.155 4.155 25 C 0.084 3.916 26 N -0.477 5.477 27 C 0.185 3.815 28 C 0.062 3.938 29 N -0.405 5.405 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 6.999 -17.588 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.178 4.178 5 C 0.056 3.944 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.377 4.377 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.578 5.578 12 Si 0.736 3.264 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.210 1.210 16 C -0.050 4.050 17 N -0.314 5.314 18 C 0.362 3.638 19 O -0.423 6.423 20 C -0.035 4.035 21 C -0.128 4.128 22 C -0.097 4.097 23 C -0.071 4.071 24 C -0.176 4.176 25 C -0.058 4.058 26 N -0.186 5.186 27 C 0.012 3.988 28 C -0.064 4.064 29 N -0.117 5.117 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.175 0.825 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.819 6.384 -16.837 18.407 hybrid contribution 0.037 0.248 -0.971 1.003 sum -3.782 6.632 -17.808 19.376 Atomic orbital electron populations 1.22132 0.94990 1.02296 1.02477 1.21615 0.94340 0.96196 0.84542 0.90750 1.23069 0.99447 0.99710 0.95537 1.21430 0.94431 0.89480 0.89082 0.91568 1.42280 1.09545 1.27784 1.55351 1.19197 0.86780 1.06844 1.24832 0.91045 1.24732 0.97491 0.98280 0.99855 1.69644 1.30912 1.22278 1.34959 0.86300 0.84126 0.78415 0.77544 1.21248 1.21695 1.21017 1.23903 0.95730 0.86424 0.98935 1.48521 1.50141 1.28800 1.03948 1.17491 0.80827 0.84004 0.81439 1.90739 1.40853 1.27343 1.83394 1.21504 0.95560 0.92987 0.93447 1.21857 0.98675 1.00605 0.91634 1.21374 0.94997 0.92996 1.00314 1.19095 0.97419 0.96144 0.94430 1.21863 0.99654 0.96253 0.99826 1.22376 0.95247 0.95200 0.92978 1.67585 1.20183 1.30136 1.00709 1.23493 0.88277 0.87113 0.99928 1.20065 0.99815 0.97543 0.88937 1.68284 1.05505 1.03239 1.34700 0.92482 0.91729 0.91591 0.90320 0.90370 0.77902 0.93343 0.91352 0.88339 0.82877 0.83366 0.84124 0.82487 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.11 37.16 0.34 -1.83 16 2 C 0.14 2.02 3.45 -66.95 -0.23 1.78 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -2.17 6.12 -24.90 -0.15 -2.32 16 5 C 0.17 3.17 3.73 -65.67 -0.24 2.92 16 6 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.71 -16.68 5.24 -51.24 -0.27 -16.95 16 8 C -0.25 -6.44 9.96 -15.06 -0.15 -6.59 16 9 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 12 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.08 1.33 5.64 -2.41 -0.01 1.31 16 17 N -0.58 -9.43 3.06 -163.82 -0.50 -9.93 16 18 C 0.58 9.32 7.63 -12.13 -0.09 9.22 16 19 O -0.55 -9.46 15.30 5.36 0.08 -9.38 16 20 C 0.12 1.74 6.73 -82.91 -0.56 1.18 16 21 C -0.11 -1.22 9.54 -39.39 -0.38 -1.59 16 22 C -0.07 -0.67 9.93 -39.32 -0.39 -1.06 16 23 C -0.06 -0.72 5.75 -106.70 -0.61 -1.34 16 24 C -0.16 -1.41 9.88 -39.44 -0.39 -1.80 16 25 C 0.08 0.85 11.07 -17.94 -0.20 0.65 16 26 N -0.48 -6.32 10.28 -13.05 -0.13 -6.46 16 27 C 0.19 2.58 11.26 -16.87 -0.19 2.39 16 28 C 0.06 0.86 6.62 -84.88 -0.56 0.29 16 29 N -0.40 -6.13 6.52 -7.51 -0.05 -6.18 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.95 6.87 -51.93 -0.36 0.60 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.25 7.72 -51.93 -0.40 0.84 16 35 H 0.39 9.69 7.76 -40.82 -0.32 9.37 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.10 1.79 5.85 -51.93 -0.30 1.49 16 39 H 0.15 1.55 7.60 -52.48 -0.40 1.15 16 40 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.18 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -31.10 359.25 -9.23 -40.32 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.55 Total: 9.85 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -3.92 Total: 2.94 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.23 Total: -65.81 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.10 -9.23 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989208708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.676 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds