Wall clock time and date at job start Tue Mar 31 2020 14:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.41810 * 2 1 4 4 C 1.54914 * 110.36501 * 237.70466 * 2 1 3 5 5 C 1.55162 * 101.58219 * 204.15453 * 4 2 1 6 6 H 1.09000 * 110.72224 * 277.14391 * 5 4 2 7 7 N 1.46493 * 110.72158 * 154.04321 * 5 4 2 8 8 C 1.36936 * 120.00055 * 154.99902 * 7 5 4 9 9 H 1.07996 * 120.00060 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00000 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99905 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99995 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46777 * 90.00517 * 12 10 8 14 14 H 1.48500 * 109.46876 * 210.00290 * 12 10 8 15 15 H 1.48498 * 109.47098 * 330.00573 * 12 10 8 16 16 C 1.54335 * 103.01949 * 35.30858 * 5 4 2 17 17 N 1.47026 * 107.26501 * 338.13792 * 16 5 4 18 18 C 1.34774 * 125.64692 * 178.84551 * 17 16 5 19 19 O 1.21532 * 120.00069 * 184.77676 * 18 17 16 20 20 C 1.48010 * 120.00241 * 4.78505 * 18 17 16 21 21 C 1.38891 * 121.16559 * 44.53697 * 20 18 17 22 22 C 1.39353 * 119.66942 * 180.28590 * 21 20 18 23 23 N 1.31109 * 121.90016 * 359.42531 * 22 21 20 24 24 C 1.33286 * 121.61382 * 0.27834 * 23 22 21 25 25 C 1.40841 * 121.90887 * 180.02562 * 24 23 22 26 26 C 1.36165 * 118.76870 * 179.97438 * 25 24 23 27 27 N 1.32534 * 121.96023 * 0.02562 * 26 25 24 28 28 C 1.31341 * 122.60364 * 359.97438 * 27 26 25 29 29 C 1.40082 * 119.87627 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.47134 * 299.16185 * 1 2 3 31 31 H 1.09001 * 109.46882 * 59.15305 * 1 2 3 32 32 H 1.08999 * 109.47824 * 179.15548 * 1 2 3 33 33 H 1.08997 * 111.00361 * 322.22950 * 4 2 1 34 34 H 1.09000 * 111.00053 * 86.08315 * 4 2 1 35 35 H 0.96999 * 120.00096 * 335.00393 * 7 5 4 36 36 H 0.97006 * 119.99784 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.99262 * 218.67056 * 16 5 4 38 38 H 1.08993 * 109.78220 * 97.49533 * 16 5 4 39 39 H 1.07996 * 120.16868 * 0.02562 * 21 20 18 40 40 H 1.07996 * 119.05323 * 179.70748 * 22 21 20 41 41 H 1.08003 * 120.61312 * 359.95852 * 25 24 23 42 42 H 1.07999 * 119.01533 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.06213 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4777 -1.1999 -0.7342 6 1 4.1945 -0.3904 -0.8721 7 7 3.9266 -2.4106 -1.4261 8 6 5.2651 -2.6724 -1.5492 9 1 5.9897 -1.9866 -1.1359 10 6 5.6904 -3.8199 -2.2043 11 7 4.8073 -4.6561 -2.7076 12 14 7.5163 -4.1768 -2.3729 13 1 7.9749 -4.9725 -1.2059 14 1 7.7574 -4.9444 -3.6210 15 1 8.2679 -2.8971 -2.4256 16 6 3.2524 -1.4726 0.7680 17 7 2.0430 -0.7385 1.1682 18 6 1.4971 -0.7364 2.4005 19 8 0.4448 -0.1614 2.5980 20 6 2.1792 -1.4344 3.5133 21 6 3.5482 -1.3067 3.7102 22 6 4.1593 -1.9827 4.7645 23 7 3.4770 -2.7352 5.5934 24 6 2.1601 -2.8976 5.4670 25 6 1.4209 -3.7040 6.3541 26 6 0.0777 -3.8246 6.1657 27 7 -0.5499 -3.2073 5.1750 28 6 0.0743 -2.4403 4.3107 29 6 1.4582 -2.2511 4.4177 30 1 -0.3633 0.5007 0.8974 31 1 -0.3633 0.5269 -0.8823 32 1 -0.3635 -1.0275 -0.0151 33 1 1.4509 -1.6480 -1.4409 34 1 2.1398 -0.1264 -2.1001 35 1 3.2758 -3.0268 -1.7970 36 1 5.1046 -5.4578 -3.1657 37 1 4.1080 -1.1191 1.3434 38 1 3.1088 -2.5406 0.9316 39 1 4.1367 -0.6901 3.0472 40 1 5.2251 -1.8802 4.9056 41 1 1.9104 -4.2174 7.1685 42 1 -0.4930 -4.4416 6.8439 43 1 -0.4783 -1.9563 3.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989223076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:52 Heat of formation + Delta-G solvation = 57.905651 kcal Electronic energy + Delta-G solvation = -27484.663210 eV Core-core repulsion = 23723.518124 eV Total energy + Delta-G solvation = -3761.145086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55402 -40.01416 -38.16531 -37.55974 -34.32192 -33.95846 -31.86265 -31.73996 -31.47539 -30.37468 -28.55953 -25.97694 -25.31176 -24.36359 -24.12656 -23.54394 -21.65830 -20.44792 -19.60787 -18.74346 -17.81267 -17.34541 -17.23032 -16.37898 -16.10747 -15.48399 -15.05852 -14.90545 -14.82092 -14.54392 -14.18984 -14.11437 -13.77210 -13.48736 -13.36899 -13.04792 -12.95634 -12.65558 -12.26953 -12.19001 -12.04075 -11.92837 -11.38477 -11.18395 -10.92643 -10.80234 -10.75313 -10.42875 -10.25838 -10.15427 -9.85612 -9.82221 -9.53669 -9.44520 -9.10001 -8.72318 -8.53630 -7.20859 -5.94138 -3.26078 -0.17380 0.48086 1.40748 2.54397 2.76706 2.96357 3.33128 3.38599 3.40738 3.86261 3.91748 4.12221 4.21313 4.37331 4.45066 4.47827 4.50330 4.88543 4.93695 4.96727 5.08547 5.10754 5.26437 5.35446 5.38653 5.45122 5.49710 5.57887 5.65211 5.72692 5.73018 5.75979 5.97925 6.01111 6.07217 6.12750 6.27361 6.32208 6.38514 6.40590 6.54441 6.71705 7.49064 7.51727 7.54486 7.72835 8.00905 8.22700 9.34904 9.87522 10.21923 11.27529 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.003883 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.125975 B = 7209.308178 C = 8589.660033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.173 3.827 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.254 4.254 9 H 0.073 0.927 10 C -0.005 4.005 11 N -0.927 5.927 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.065 3.935 17 N -0.596 5.596 18 C 0.571 3.429 19 O -0.531 6.531 20 C -0.033 4.033 21 C -0.144 4.144 22 C 0.155 3.845 23 N -0.468 5.468 24 C 0.156 3.844 25 C -0.146 4.146 26 C 0.091 3.909 27 N -0.487 5.487 28 C 0.171 3.829 29 C -0.134 4.134 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.161 0.839 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 7.478 13.244 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.088 0.912 7 N -0.350 5.350 8 C -0.385 4.385 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.206 1.206 16 C -0.061 4.061 17 N -0.328 5.328 18 C 0.358 3.642 19 O -0.410 6.410 20 C -0.046 4.046 21 C -0.164 4.164 22 C -0.018 4.018 23 N -0.177 5.177 24 C 0.029 3.971 25 C -0.166 4.166 26 C -0.053 4.053 27 N -0.195 5.195 28 C -0.001 4.001 29 C -0.139 4.139 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.189 0.811 41 H 0.165 0.835 42 H 0.178 0.822 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.669 7.040 14.132 17.139 hybrid contribution 1.587 -0.085 -0.791 1.775 sum -5.081 6.955 13.342 15.880 Atomic orbital electron populations 1.22204 0.93936 1.02778 1.03288 1.21976 0.95110 0.95278 0.84238 0.90446 1.23206 0.97858 1.00430 0.96203 1.21163 0.93342 0.91302 0.88147 0.91201 1.42381 1.05351 1.22478 1.64829 1.19239 0.83222 1.04844 1.31182 0.90870 1.24782 0.97770 0.97265 1.00427 1.69659 1.32422 1.13496 1.41840 0.86195 0.84702 0.77975 0.77308 1.21538 1.21643 1.20564 1.23623 0.84857 0.96832 1.00800 1.48559 1.28559 1.47452 1.08252 1.17686 0.84342 0.80619 0.81518 1.90724 1.21632 1.45731 1.82877 1.20338 0.94055 0.95474 0.94757 1.22620 0.93808 1.00474 0.99514 1.23158 1.00717 0.89347 0.88572 1.67871 1.06597 1.16276 1.26907 1.18880 0.90057 0.95058 0.93080 1.21721 0.94812 0.99812 1.00291 1.22343 0.91847 0.96350 0.94786 1.67621 1.40665 1.07607 1.03621 1.23488 0.89804 0.91085 0.95726 1.19566 0.96779 1.00206 0.97353 0.89697 0.92124 0.92597 0.90392 0.89864 0.77804 0.93223 0.91767 0.90714 0.82977 0.81088 0.83484 0.82219 0.80852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.64 37.16 0.32 -1.76 16 2 C 0.14 1.79 3.79 -66.42 -0.25 1.54 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -1.98 6.13 -24.58 -0.15 -2.13 16 5 C 0.17 2.94 3.60 -66.09 -0.24 2.70 16 6 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 7 N -0.71 -15.92 5.16 -51.65 -0.27 -16.19 16 8 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 12 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.06 0.99 5.69 -3.06 -0.02 0.97 16 17 N -0.60 -8.45 3.24 -164.08 -0.53 -8.98 16 18 C 0.57 8.41 6.86 -12.26 -0.08 8.32 16 19 O -0.53 -8.58 12.74 5.34 0.07 -8.51 16 20 C -0.03 -0.45 5.44 -104.37 -0.57 -1.02 16 21 C -0.14 -1.67 8.56 -38.93 -0.33 -2.01 16 22 C 0.16 1.72 11.14 -17.45 -0.19 1.53 16 23 N -0.47 -6.17 10.33 -10.95 -0.11 -6.28 16 24 C 0.16 2.14 6.63 -84.88 -0.56 1.58 16 25 C -0.15 -1.69 10.08 -39.34 -0.40 -2.08 16 26 C 0.09 1.03 11.06 -17.99 -0.20 0.83 16 27 N -0.49 -6.71 10.31 -13.24 -0.14 -6.85 16 28 C 0.17 2.46 10.47 -17.07 -0.18 2.28 16 29 C -0.13 -1.93 5.76 -106.55 -0.61 -2.54 16 30 H 0.08 1.18 5.88 -51.93 -0.31 0.88 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 9.44 7.76 -40.82 -0.32 9.12 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.06 0.88 5.80 -51.93 -0.30 0.58 16 38 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 39 H 0.15 1.49 6.17 -52.49 -0.32 1.17 16 40 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.17 2.50 6.23 -52.49 -0.33 2.17 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -30.53 353.79 -8.99 -39.52 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.33 Total: 10.29 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.71 Total: 1.41 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.32 Total: -64.00 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.53 -8.99 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989223076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.425 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds