Wall clock time and date at job start Tue Mar 31 2020 14:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.99856 * 2 1 4 4 C 1.54326 * 109.88429 * 238.89834 * 2 1 3 5 5 C 1.55156 * 102.94248 * 218.39002 * 4 2 1 6 6 H 1.09002 * 111.00598 * 277.38987 * 5 4 2 7 7 N 1.46501 * 111.00188 * 153.57879 * 5 4 2 8 8 C 1.36935 * 119.99801 * 155.00279 * 7 5 4 9 9 H 1.08003 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00372 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 269.99982 * 12 10 8 14 14 H 1.48503 * 109.47399 * 29.99472 * 12 10 8 15 15 H 1.48498 * 109.47295 * 150.00079 * 12 10 8 16 16 C 1.54909 * 101.58240 * 35.50658 * 5 4 2 17 17 N 1.47025 * 109.88013 * 121.09316 * 2 1 3 18 18 C 1.34769 * 125.64644 * 298.40620 * 17 2 1 19 19 O 1.21550 * 120.00490 * 359.97438 * 18 17 2 20 20 C 1.47928 * 120.00169 * 179.97438 * 18 17 2 21 21 C 1.38933 * 119.84802 * 179.97438 * 20 18 17 22 22 C 1.40647 * 117.39024 * 180.02562 * 21 20 18 23 23 C 1.40255 * 122.04599 * 179.97438 * 22 21 20 24 24 C 1.36266 * 119.47582 * 179.97438 * 23 22 21 25 25 C 1.39326 * 120.87749 * 0.09256 * 24 23 22 26 26 C 1.36234 * 121.15164 * 359.92613 * 25 24 23 27 27 C 1.40330 * 119.68306 * 0.02562 * 26 25 24 28 28 N 1.33813 * 121.61852 * 179.97438 * 27 26 25 29 29 N 1.28434 * 121.68987 * 179.69931 * 28 27 26 30 30 H 1.09002 * 109.46677 * 181.09140 * 1 2 3 31 31 H 1.08991 * 109.47194 * 301.09760 * 1 2 3 32 32 H 1.09002 * 109.46418 * 61.10214 * 1 2 3 33 33 H 1.09002 * 110.71627 * 100.03109 * 4 2 1 34 34 H 1.08997 * 110.71838 * 336.75828 * 4 2 1 35 35 H 0.97000 * 119.99781 * 335.00060 * 7 5 4 36 36 H 0.97000 * 119.99954 * 359.97438 * 11 10 8 37 37 H 1.08996 * 110.37115 * 81.82492 * 16 5 4 38 38 H 1.08998 * 110.37100 * 204.15526 * 16 5 4 39 39 H 1.08001 * 121.30267 * 0.02585 * 21 20 18 40 40 H 1.08007 * 120.26242 * 0.02562 * 23 22 21 41 41 H 1.08005 * 119.56207 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.42611 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.15341 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0550 -0.7497 -1.2426 5 6 3.2877 -1.5143 -0.6922 6 1 4.1657 -0.8691 -0.6608 7 7 3.5533 -2.7197 -1.4814 8 6 4.8165 -3.2466 -1.5224 9 1 5.6172 -2.7733 -0.9734 10 6 5.0683 -4.3883 -2.2706 11 7 4.0927 -4.9648 -2.9402 12 14 6.7914 -5.1076 -2.3261 13 1 7.5440 -4.5031 -3.4546 14 1 7.4919 -4.8136 -1.0501 15 1 6.7082 -6.5778 -2.5178 16 6 2.8145 -1.8794 0.7369 17 7 2.0300 -0.7140 1.1840 18 6 1.8072 -0.3621 2.4657 19 8 1.1417 0.6232 2.7185 20 6 2.3724 -1.1748 3.5649 21 6 2.1411 -0.8087 4.8850 22 6 2.7032 -1.6177 5.8888 23 6 2.5320 -1.3383 7.2526 24 6 3.0998 -2.1580 8.1814 25 6 3.8486 -3.2672 7.7938 26 6 4.0348 -3.5669 6.4780 27 6 3.4653 -2.7476 5.4912 28 7 3.6239 -3.0055 4.1878 29 7 3.0986 -2.2598 3.2837 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8799 32 1 -0.3632 0.4966 -0.8998 33 1 2.3531 -0.0461 -2.0200 34 1 1.3052 -1.4460 -1.6181 35 1 2.8343 -3.1445 -1.9748 36 1 3.1977 -4.5920 -2.9106 37 1 2.1886 -2.7715 0.7131 38 1 3.6716 -2.0337 1.3925 39 1 1.5526 0.0630 5.1308 40 1 1.9540 -0.4808 7.5642 41 1 2.9684 -1.9444 9.2319 42 1 4.2884 -3.9008 8.5496 43 1 4.6179 -4.4311 6.1956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989275418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:34 Heat of formation + Delta-G solvation = 72.695079 kcal Electronic energy + Delta-G solvation = -27107.767691 eV Core-core repulsion = 23347.263923 eV Total energy + Delta-G solvation = -3760.503768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60803 -39.93076 -38.06380 -37.45685 -34.47226 -33.93706 -32.49482 -31.39117 -31.24807 -30.51056 -28.14250 -25.66798 -25.57406 -25.07509 -23.58566 -22.77018 -22.15452 -20.42645 -19.75144 -18.93971 -18.08540 -17.40568 -16.85716 -16.37906 -16.04369 -15.62354 -15.08466 -15.02594 -14.60302 -14.41135 -14.15290 -13.88889 -13.67743 -13.47369 -13.28886 -12.82578 -12.66926 -12.48956 -12.38365 -12.32009 -12.15616 -11.76571 -11.49781 -11.03583 -10.95272 -10.76279 -10.64832 -10.47719 -10.27601 -9.98619 -9.91984 -9.81458 -9.67702 -9.17186 -8.92214 -8.77317 -8.36932 -7.07338 -6.09880 -3.11225 -0.35076 0.13506 1.38273 2.16646 2.92622 3.02973 3.54807 3.59840 3.68498 3.69660 3.73777 3.98655 4.17423 4.21217 4.39869 4.61524 4.64903 4.70842 4.76258 4.96411 5.12275 5.18307 5.20536 5.32052 5.36275 5.47028 5.48173 5.63706 5.70964 5.75256 5.79318 5.82937 5.86497 5.91220 6.05460 6.11004 6.25265 6.27234 6.31549 6.45492 6.54848 6.75516 6.86084 7.65810 7.83228 8.08682 8.41126 8.75869 9.19806 10.06377 10.19584 11.38233 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.003857 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.446673 B = 7257.224003 C = 9649.257706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.175 3.825 6 H 0.068 0.932 7 N -0.721 5.721 8 C -0.334 4.334 9 H 0.067 0.933 10 C -0.041 4.041 11 N -0.943 5.943 12 Si 1.082 2.918 13 H -0.296 1.296 14 H -0.293 1.293 15 H -0.288 1.288 16 C 0.074 3.926 17 N -0.585 5.585 18 C 0.586 3.414 19 O -0.546 6.546 20 C -0.001 4.001 21 C -0.033 4.033 22 C -0.075 4.075 23 C -0.096 4.096 24 C -0.098 4.098 25 C -0.096 4.096 26 C -0.076 4.076 27 C 0.070 3.930 28 N -0.197 5.197 29 N -0.175 5.175 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.370 0.630 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.165 0.835 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 8.430 21.421 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.086 0.914 7 N -0.362 5.362 8 C -0.465 4.465 9 H 0.085 0.915 10 C -0.239 4.239 11 N -0.588 5.588 12 Si 0.913 3.087 13 H -0.223 1.223 14 H -0.220 1.220 15 H -0.214 1.214 16 C -0.051 4.051 17 N -0.316 5.316 18 C 0.372 3.628 19 O -0.424 6.424 20 C -0.134 4.134 21 C -0.064 4.064 22 C -0.083 4.083 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.097 4.097 27 C -0.058 4.058 28 N -0.053 5.053 29 N -0.032 5.032 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.183 0.817 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.374 6.911 19.900 21.334 hybrid contribution -1.770 1.921 1.674 3.103 sum -5.144 8.832 21.574 23.873 Atomic orbital electron populations 1.22134 0.94901 1.02317 1.02528 1.21609 0.94389 0.96184 0.84398 0.90600 1.23086 0.99377 0.99732 0.95679 1.21293 0.94473 0.89129 0.88819 0.91419 1.42292 1.09308 1.28600 1.55982 1.20089 0.86824 1.10494 1.29046 0.91472 1.25765 1.06034 0.95204 0.96870 1.70858 1.01445 1.42465 1.43988 0.83213 0.73799 0.76335 0.75400 1.22349 1.21990 1.21380 1.23845 0.95728 0.86407 0.99150 1.48496 1.50289 1.28881 1.03934 1.17110 0.80655 0.83807 0.81270 1.90751 1.41094 1.27203 1.83382 1.22581 1.00051 0.96536 0.94276 1.22528 0.94426 0.98319 0.91119 1.18819 0.98414 0.95722 0.95374 1.21019 0.99726 1.00214 0.90548 1.21114 0.96108 0.94282 1.00275 1.21103 0.97445 0.97006 0.96083 1.20879 0.98429 0.99093 0.91276 1.20535 0.96669 0.94426 0.94130 1.74058 1.13238 1.20071 0.97895 1.73736 1.02691 1.00674 1.26114 0.92494 0.91544 0.91644 0.90211 0.90520 0.79656 0.93339 0.91348 0.88264 0.81749 0.84269 0.84713 0.84460 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.09 37.16 0.34 -1.88 16 2 C 0.14 2.10 3.46 -66.95 -0.23 1.87 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.14 -2.26 6.12 -24.90 -0.15 -2.41 16 5 C 0.18 3.50 3.71 -65.78 -0.24 3.25 16 6 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 7 N -0.72 -17.69 5.24 -51.35 -0.27 -17.96 16 8 C -0.33 -9.26 9.96 -15.06 -0.15 -9.41 16 9 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 10 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 11 N -0.94 -28.89 13.70 55.49 0.76 -28.13 16 12 Si 1.08 26.01 29.92 -169.99 -5.09 20.93 16 13 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 C 0.07 1.41 5.63 -2.53 -0.01 1.40 16 17 N -0.59 -9.98 3.07 -164.09 -0.50 -10.48 16 18 C 0.59 9.95 7.62 -12.30 -0.09 9.86 16 19 O -0.55 -9.71 15.40 5.32 0.08 -9.62 16 20 C 0.00 -0.02 6.79 -82.89 -0.56 -0.58 16 21 C -0.03 -0.42 9.51 -38.42 -0.37 -0.78 16 22 C -0.07 -0.85 5.75 -106.80 -0.61 -1.46 16 23 C -0.10 -0.74 9.81 -39.53 -0.39 -1.13 16 24 C -0.10 -0.61 9.96 -39.89 -0.40 -1.00 16 25 C -0.10 -0.64 9.94 -39.90 -0.40 -1.04 16 26 C -0.08 -0.73 10.00 -39.52 -0.40 -1.12 16 27 C 0.07 0.91 6.69 -84.79 -0.57 0.34 16 28 N -0.20 -3.22 11.55 32.23 0.37 -2.85 16 29 N -0.17 -3.03 7.75 33.24 0.26 -2.77 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.98 6.90 -51.93 -0.36 0.62 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.24 7.71 -51.93 -0.40 0.84 16 35 H 0.37 9.30 6.60 -40.82 -0.27 9.03 16 36 H 0.26 7.67 6.77 -40.82 -0.28 7.40 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.10 2.02 5.89 -51.93 -0.31 1.71 16 39 H 0.17 1.70 7.69 -52.49 -0.40 1.30 16 40 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 42 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -33.83 357.89 -8.77 -42.59 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.45 Total: 8.30 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.33 Total: -5.40 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.62 Total: -62.19 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.09 Total: 20.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.83 -8.77 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989275418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.289 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds