Wall clock time and date at job start Tue Mar 31 2020 14:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.99856 * 2 1 4 4 C 1.54326 * 109.88429 * 238.89834 * 2 1 3 5 5 C 1.55156 * 102.94248 * 218.39002 * 4 2 1 6 6 H 1.09002 * 111.00598 * 277.38987 * 5 4 2 7 7 N 1.46501 * 111.00188 * 153.57879 * 5 4 2 8 8 C 1.36935 * 119.99801 * 155.00279 * 7 5 4 9 9 H 1.08003 * 120.00239 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99745 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00372 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 269.99982 * 12 10 8 14 14 H 1.48503 * 109.47399 * 29.99472 * 12 10 8 15 15 H 1.48498 * 109.47295 * 150.00079 * 12 10 8 16 16 C 1.54909 * 101.58240 * 35.50658 * 5 4 2 17 17 N 1.47025 * 109.88013 * 121.09316 * 2 1 3 18 18 C 1.34769 * 125.64644 * 298.40620 * 17 2 1 19 19 O 1.21550 * 120.00490 * 359.97438 * 18 17 2 20 20 C 1.47928 * 120.00169 * 179.97438 * 18 17 2 21 21 C 1.38933 * 119.84802 * 179.97438 * 20 18 17 22 22 C 1.40647 * 117.39024 * 180.02562 * 21 20 18 23 23 C 1.40255 * 122.04599 * 179.97438 * 22 21 20 24 24 C 1.36266 * 119.47582 * 179.97438 * 23 22 21 25 25 C 1.39326 * 120.87749 * 0.09256 * 24 23 22 26 26 C 1.36234 * 121.15164 * 359.92613 * 25 24 23 27 27 C 1.40330 * 119.68306 * 0.02562 * 26 25 24 28 28 N 1.33813 * 121.61852 * 179.97438 * 27 26 25 29 29 N 1.28434 * 121.68987 * 179.69931 * 28 27 26 30 30 H 1.09002 * 109.46677 * 181.09140 * 1 2 3 31 31 H 1.08991 * 109.47194 * 301.09760 * 1 2 3 32 32 H 1.09002 * 109.46418 * 61.10214 * 1 2 3 33 33 H 1.09002 * 110.71627 * 100.03109 * 4 2 1 34 34 H 1.08997 * 110.71838 * 336.75828 * 4 2 1 35 35 H 0.97000 * 119.99781 * 335.00060 * 7 5 4 36 36 H 0.97000 * 119.99954 * 359.97438 * 11 10 8 37 37 H 1.08996 * 110.37115 * 81.82492 * 16 5 4 38 38 H 1.08998 * 110.37100 * 204.15526 * 16 5 4 39 39 H 1.08001 * 121.30267 * 0.02585 * 21 20 18 40 40 H 1.08007 * 120.26242 * 0.02562 * 23 22 21 41 41 H 1.08005 * 119.56207 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.42611 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.15341 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0550 -0.7497 -1.2426 5 6 3.2877 -1.5143 -0.6922 6 1 4.1657 -0.8691 -0.6608 7 7 3.5533 -2.7197 -1.4814 8 6 4.8165 -3.2466 -1.5224 9 1 5.6172 -2.7733 -0.9734 10 6 5.0683 -4.3883 -2.2706 11 7 4.0927 -4.9648 -2.9402 12 14 6.7914 -5.1076 -2.3261 13 1 7.5440 -4.5031 -3.4546 14 1 7.4919 -4.8136 -1.0501 15 1 6.7082 -6.5778 -2.5178 16 6 2.8145 -1.8794 0.7369 17 7 2.0300 -0.7140 1.1840 18 6 1.8072 -0.3621 2.4657 19 8 1.1417 0.6232 2.7185 20 6 2.3724 -1.1748 3.5649 21 6 2.1411 -0.8087 4.8850 22 6 2.7032 -1.6177 5.8888 23 6 2.5320 -1.3383 7.2526 24 6 3.0998 -2.1580 8.1814 25 6 3.8486 -3.2672 7.7938 26 6 4.0348 -3.5669 6.4780 27 6 3.4653 -2.7476 5.4912 28 7 3.6239 -3.0055 4.1878 29 7 3.0986 -2.2598 3.2837 30 1 -0.3633 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8799 32 1 -0.3632 0.4966 -0.8998 33 1 2.3531 -0.0461 -2.0200 34 1 1.3052 -1.4460 -1.6181 35 1 2.8343 -3.1445 -1.9748 36 1 3.1977 -4.5920 -2.9106 37 1 2.1886 -2.7715 0.7131 38 1 3.6716 -2.0337 1.3925 39 1 1.5526 0.0630 5.1308 40 1 1.9540 -0.4808 7.5642 41 1 2.9684 -1.9444 9.2319 42 1 4.2884 -3.9008 8.5496 43 1 4.6179 -4.4311 6.1956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989275418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:34 Heat of formation + Delta-G solvation = 50.568407 kcal Electronic energy + Delta-G solvation = -27108.727176 eV Core-core repulsion = 23347.263923 eV Total energy + Delta-G solvation = -3761.463253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58233 -41.20750 -39.08533 -38.70775 -36.36781 -34.88622 -33.62030 -33.16474 -32.25891 -31.39160 -29.89795 -26.94078 -26.51426 -26.20672 -25.57778 -23.66756 -23.28526 -22.02655 -20.93084 -19.82128 -19.51637 -19.13891 -17.89903 -17.60871 -17.15351 -16.83172 -16.51289 -16.12912 -15.71867 -15.63403 -15.44574 -15.36438 -14.96087 -14.74140 -14.48098 -14.33764 -13.86214 -13.55503 -13.43519 -13.39331 -13.12092 -13.02487 -12.76639 -12.65199 -12.41662 -12.22028 -11.95771 -11.89408 -11.82948 -11.77180 -11.26346 -11.22465 -10.98461 -10.77863 -10.49938 -9.85949 -9.47201 -9.14653 -8.37825 -5.33067 -1.20218 -0.78203 0.60426 1.17555 1.59481 1.67521 1.70674 1.84718 2.00394 2.60402 2.72540 2.78301 3.12543 3.17526 3.38270 3.39093 3.50841 3.70186 3.73696 3.77944 3.87648 4.03340 4.09947 4.14236 4.22268 4.36082 4.37765 4.39700 4.47186 4.64948 4.65033 4.75504 4.88390 4.88488 4.99642 5.04140 5.10661 5.16626 5.21878 5.27034 5.29012 5.34012 5.62035 5.68147 6.26731 6.51708 6.77586 7.08042 7.36276 7.97254 8.07935 9.13990 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.003857 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.446673 B = 7257.224003 C = 9649.257706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.167 3.833 6 H 0.061 0.939 7 N -0.732 5.732 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.098 4.098 11 N -0.974 5.974 12 Si 1.127 2.873 13 H -0.282 1.282 14 H -0.277 1.277 15 H -0.293 1.293 16 C 0.097 3.903 17 N -0.589 5.589 18 C 0.588 3.412 19 O -0.556 6.556 20 C -0.035 4.035 21 C -0.022 4.022 22 C -0.084 4.084 23 C -0.097 4.097 24 C -0.082 4.082 25 C -0.067 4.067 26 C -0.106 4.106 27 C 0.052 3.948 28 N -0.239 5.239 29 N -0.213 5.213 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.364 0.636 36 H 0.246 0.754 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.186 0.814 40 H 0.172 0.828 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 9.704 25.005 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.105 0.895 4 C -0.164 4.164 5 C 0.057 3.943 6 H 0.079 0.921 7 N -0.373 5.373 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.290 4.290 11 N -0.621 5.621 12 Si 0.952 3.048 13 H -0.209 1.209 14 H -0.202 1.202 15 H -0.219 1.219 16 C -0.029 4.029 17 N -0.320 5.320 18 C 0.374 3.626 19 O -0.435 6.435 20 C -0.169 4.169 21 C -0.052 4.052 22 C -0.093 4.093 23 C -0.115 4.115 24 C -0.101 4.101 25 C -0.088 4.088 26 C -0.127 4.127 27 C -0.076 4.076 28 N -0.093 5.093 29 N -0.070 5.070 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.197 0.803 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.203 0.797 40 H 0.189 0.811 41 H 0.198 0.802 42 H 0.194 0.806 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.385 8.237 23.505 25.135 hybrid contribution -1.782 1.556 0.914 2.536 sum -5.167 9.793 24.419 26.812 Atomic orbital electron populations 1.22063 0.93420 1.02003 1.03472 1.21751 0.95537 0.96242 0.83174 0.89470 1.22980 0.97299 0.99566 0.96524 1.21440 0.96013 0.87846 0.89040 0.92052 1.42383 1.08222 1.29907 1.56745 1.20369 0.87983 1.10144 1.27705 0.91714 1.27106 1.08773 0.96103 0.97014 1.70958 1.01566 1.43544 1.46072 0.82633 0.70385 0.75311 0.76484 1.20872 1.20243 1.21920 1.23289 0.95031 0.86460 0.98136 1.48478 1.50431 1.28372 1.04739 1.17320 0.80185 0.83698 0.81356 1.90721 1.41627 1.27638 1.83542 1.22489 1.02080 0.97182 0.95191 1.22791 0.93618 0.98630 0.90131 1.19119 0.98129 0.95008 0.97040 1.21444 0.99858 1.01530 0.88670 1.21703 0.93612 0.92628 1.02205 1.21649 0.95044 0.96759 0.95310 1.21093 0.99909 0.99598 0.92113 1.20979 0.97379 0.95777 0.93445 1.73882 1.14713 1.21045 0.99707 1.73545 1.04208 1.01810 1.27462 0.93345 0.92279 0.88995 0.88362 0.90524 0.80300 0.94392 0.93579 0.89794 0.79664 0.81095 0.80193 0.80559 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.09 71.98 0.65 -3.41 16 2 C 0.14 4.11 3.46 45.34 0.16 4.27 16 3 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 4 C -0.13 -4.04 6.12 31.78 0.19 -3.85 16 5 C 0.17 6.91 3.71 46.38 0.17 7.09 16 6 H 0.06 2.61 8.09 -2.39 -0.02 2.59 16 7 N -0.73 -37.29 5.24 -316.37 -1.66 -38.95 16 8 C -0.33 -18.88 9.96 84.03 0.84 -18.04 16 9 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 10 C -0.10 -5.79 5.50 84.86 0.47 -5.32 16 11 N -0.97 -61.39 13.70 21.65 0.30 -61.09 16 12 Si 1.13 53.21 29.92 68.60 2.05 55.26 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 16 C 0.10 3.93 5.63 86.85 0.49 4.42 16 17 N -0.59 -20.80 3.07 -791.33 -2.43 -23.23 16 18 C 0.59 20.57 7.62 86.81 0.66 21.23 16 19 O -0.56 -19.78 15.40 -3.87 -0.06 -19.84 16 20 C -0.04 -1.17 6.79 41.62 0.28 -0.89 16 21 C -0.02 -0.54 9.51 23.02 0.22 -0.33 16 22 C -0.08 -1.82 5.75 -21.28 -0.12 -1.94 16 23 C -0.10 -1.11 9.81 22.30 0.22 -0.89 16 24 C -0.08 -0.56 9.96 22.07 0.22 -0.34 16 25 C -0.07 -0.62 9.94 22.06 0.22 -0.40 16 26 C -0.11 -1.91 10.00 22.31 0.22 -1.69 16 27 C 0.05 1.37 6.69 40.27 0.27 1.64 16 28 N -0.24 -8.36 11.55 -51.93 -0.60 -8.96 16 29 N -0.21 -7.99 7.75 -48.74 -0.38 -8.37 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.69 6.90 -2.39 -0.02 1.67 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.50 7.71 -2.39 -0.02 2.48 16 35 H 0.36 19.16 6.60 -92.71 -0.61 18.55 16 36 H 0.25 15.36 6.77 -92.71 -0.63 14.73 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 3.69 5.89 -2.39 -0.01 3.68 16 39 H 0.19 3.59 7.69 -2.91 -0.02 3.56 16 40 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -78.43 357.89 2.97 -75.46 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.58 Total: 28.18 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 5.16 Total: 1.54 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -4.76 Total: -140.59 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.06 Total: -19.84 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 2.05 Total: 55.26 kcal Total: -78.43 2.97 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989275418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.029 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds