Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.00027 * 2 1 4 4 C 1.54346 * 109.77652 * 121.16314 * 2 1 3 5 5 C 1.55157 * 103.01924 * 97.49615 * 4 2 1 6 6 H 1.08992 * 111.00507 * 277.22935 * 5 4 2 7 7 N 1.46498 * 111.00538 * 153.37934 * 5 4 2 8 8 C 1.36932 * 120.00342 * 161.34999 * 7 5 4 9 9 H 1.08003 * 119.99900 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00074 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99974 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99987 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46803 * 90.00920 * 12 10 8 14 14 H 1.48506 * 109.47128 * 210.00424 * 12 10 8 15 15 H 1.48498 * 109.47216 * 330.00532 * 12 10 8 16 16 C 1.54910 * 101.58186 * 35.30740 * 5 4 2 17 17 N 1.47020 * 109.88274 * 238.89770 * 2 1 3 18 18 C 1.34778 * 125.64472 * 59.56187 * 17 2 1 19 19 O 1.21590 * 119.99880 * 183.89433 * 18 17 2 20 20 C 1.47514 * 119.99886 * 3.90168 * 18 17 2 21 21 C 1.38671 * 120.34079 * 6.74481 * 20 18 17 22 22 C 1.38985 * 120.63247 * 179.97438 * 21 20 18 23 23 C 1.36213 * 121.14469 * 359.73726 * 22 21 20 24 24 C 1.40691 * 120.16511 * 0.51720 * 23 22 21 25 25 N 1.33760 * 120.97077 * 179.77365 * 24 23 22 26 26 C 1.31333 * 119.73023 * 179.72452 * 25 24 23 27 27 C 1.39647 * 120.68335 * 359.97438 * 26 25 24 28 28 N 1.31447 * 120.64245 * 359.97438 * 27 26 25 29 29 C 1.33498 * 119.72217 * 0.04051 * 28 27 26 30 30 H 1.09001 * 109.47231 * 199.54402 * 1 2 3 31 31 H 1.09006 * 109.46774 * 319.54370 * 1 2 3 32 32 H 1.08996 * 109.47033 * 79.54080 * 1 2 3 33 33 H 1.08995 * 110.85057 * 339.02719 * 4 2 1 34 34 H 1.09004 * 110.66325 * 215.87636 * 4 2 1 35 35 H 0.97007 * 119.99461 * 341.34835 * 7 5 4 36 36 H 0.96995 * 119.99916 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.36479 * 204.15128 * 16 5 4 38 38 H 1.08998 * 110.37098 * 81.82668 * 16 5 4 39 39 H 1.07998 * 119.68191 * 0.02562 * 21 20 18 40 40 H 1.08003 * 119.42502 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.92170 * 180.25756 * 23 22 21 42 42 H 1.08003 * 119.66202 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.68088 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2428 5 6 2.3561 -2.1698 0.6916 6 1 1.4522 -2.7778 0.6581 7 7 3.3999 -2.8276 1.4814 8 6 3.5511 -4.1872 1.4192 9 1 2.9006 -4.7745 0.7882 10 6 4.5398 -4.8105 2.1681 11 7 4.6855 -6.1173 2.1079 12 14 5.6646 -3.7947 3.2601 13 1 5.0640 -3.6737 4.6128 14 1 6.9878 -4.4608 3.3637 15 1 5.8361 -2.4420 2.6718 16 6 2.8613 -1.8466 -0.7367 17 7 2.0300 -0.7142 -1.1838 18 6 1.7754 -0.3846 -2.4656 19 8 2.1845 -1.0901 -3.3675 20 6 1.0004 0.8319 -2.7744 21 6 0.6502 1.7147 -1.7639 22 6 -0.0795 2.8630 -2.0480 23 6 -0.4650 3.1556 -3.3212 24 6 -0.1364 2.2857 -4.3770 25 7 -0.5107 2.5551 -5.6326 26 6 -0.1861 1.7287 -6.6004 27 6 0.5469 0.5706 -6.3328 28 7 0.9263 0.2862 -5.1069 29 6 0.6075 1.1114 -4.1071 30 1 -0.3634 -0.9685 0.3438 31 1 -0.3633 0.7820 0.6669 32 1 -0.3633 0.1866 -1.0106 33 1 1.2885 -0.7951 2.0192 34 1 2.9601 -0.2827 1.6226 35 1 3.9840 -2.3001 2.0485 36 1 5.3766 -6.5528 2.6308 37 1 2.7178 -2.7049 -1.3930 38 1 3.9123 -1.5589 -0.7114 39 1 0.9480 1.5083 -0.7465 40 1 -0.3413 3.5373 -1.2460 41 1 -1.0279 4.0556 -3.5202 42 1 -0.4892 1.9470 -7.6138 43 1 0.8047 -0.0978 -7.1410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989602913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = 105.154993 kcal Electronic energy + Delta-G solvation = -27417.576882 eV Core-core repulsion = 23658.480681 eV Total energy + Delta-G solvation = -3759.096201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82121 -40.30936 -37.65726 -37.47912 -34.92618 -34.64013 -32.22585 -31.55130 -31.04762 -30.77987 -28.71328 -26.19325 -25.41664 -24.54979 -24.15283 -22.97032 -21.86691 -20.32083 -19.62395 -19.32321 -18.10504 -17.67463 -17.00026 -16.46164 -15.88810 -15.56113 -15.39615 -15.14938 -14.59404 -14.39099 -14.32156 -13.96911 -13.82423 -13.61863 -13.20249 -12.83379 -12.57207 -12.49553 -12.32469 -12.23091 -11.90396 -11.83956 -11.77960 -11.57205 -11.42347 -11.09330 -10.88253 -10.74552 -10.40938 -10.07476 -9.89743 -9.65651 -9.25036 -9.13506 -9.04405 -8.81111 -8.40651 -7.40345 -5.83860 -3.22478 -0.26341 0.26863 1.45145 2.36252 3.00218 3.17614 3.32329 3.34044 3.41224 3.72026 3.83976 3.89239 3.98142 4.34455 4.37251 4.51813 4.54806 4.63539 4.70824 4.84099 4.85795 4.94544 5.01441 5.19281 5.29901 5.37999 5.41617 5.48168 5.58963 5.60146 5.70904 5.72678 5.84458 5.86158 5.89361 5.97725 6.09493 6.25222 6.28131 6.45898 6.54215 6.74331 7.02453 7.52316 7.69642 7.90428 8.34179 8.37804 9.10761 9.82327 9.99734 11.33849 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002961 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.981994 B = 9455.294561 C =10258.731553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.118 3.882 3 H 0.085 0.915 4 C -0.139 4.139 5 C 0.179 3.821 6 H 0.073 0.927 7 N -0.736 5.736 8 C -0.253 4.253 9 H 0.093 0.907 10 C 0.009 3.991 11 N -0.929 5.929 12 Si 0.885 3.115 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.085 3.915 17 N -0.607 5.607 18 C 0.564 3.436 19 O -0.501 6.501 20 C -0.097 4.097 21 C -0.094 4.094 22 C -0.112 4.112 23 C -0.062 4.062 24 C 0.066 3.934 25 N -0.427 5.427 26 C 0.072 3.928 27 C 0.075 3.925 28 N -0.388 5.388 29 C 0.114 3.886 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.181 0.819 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.175 0.825 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.560 22.415 -10.029 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.014 3.986 3 H 0.102 0.898 4 C -0.178 4.178 5 C 0.067 3.933 6 H 0.091 0.909 7 N -0.377 5.377 8 C -0.383 4.383 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.575 5.575 12 Si 0.715 3.285 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.040 4.040 17 N -0.343 5.343 18 C 0.352 3.648 19 O -0.375 6.375 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.081 4.081 24 C -0.058 4.058 25 N -0.141 5.141 26 C -0.103 4.103 27 C -0.100 4.100 28 N -0.101 5.101 29 C -0.011 4.011 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.197 0.803 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.192 0.808 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.333 21.784 -10.408 27.110 hybrid contribution 0.885 0.667 0.551 1.238 sum -11.448 22.451 -9.857 27.060 Atomic orbital electron populations 1.22765 0.94693 1.03682 1.02935 1.21967 0.94364 0.95890 0.86394 0.89811 1.23048 1.01929 0.97121 0.95697 1.21258 0.92654 0.90859 0.88517 0.90869 1.42640 1.37775 1.05344 1.51961 1.19072 1.14716 0.81162 1.23305 0.88963 1.24691 0.98829 0.95388 0.99805 1.69700 1.35772 1.07519 1.44542 0.86557 0.81065 0.79715 0.81189 1.20954 1.21644 1.20262 1.23341 0.94254 0.87760 0.98631 1.48514 1.50584 1.31215 1.03951 1.17543 0.80795 0.84812 0.81687 1.90859 1.51024 1.51272 1.44348 1.19906 1.01637 0.97213 0.91458 1.23324 0.93686 0.92130 1.02226 1.21003 0.98107 0.97177 0.96884 1.20995 0.97777 0.98371 0.90983 1.19513 0.98651 0.94919 0.92731 1.68682 1.17040 1.29189 0.99153 1.24089 0.94995 0.91592 0.99672 1.24295 0.94028 0.96287 0.95406 1.69048 1.14563 1.27303 0.99186 1.19336 0.96263 0.92044 0.93508 0.91015 0.90905 0.91298 0.89539 0.90464 0.80232 0.92885 0.90374 0.91403 0.80296 0.83995 0.84064 0.80802 0.80741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 7.66 37.16 0.28 -1.43 16 2 C 0.12 1.32 2.73 -66.94 -0.18 1.14 16 3 H 0.08 0.75 6.06 -51.93 -0.31 0.43 16 4 C -0.14 -1.78 6.02 -24.88 -0.15 -1.93 16 5 C 0.18 3.18 3.69 -65.78 -0.24 2.94 16 6 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 7 N -0.74 -16.32 5.08 -51.35 -0.26 -16.58 16 8 C -0.25 -6.89 10.47 -15.06 -0.16 -7.05 16 9 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 10 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 11 N -0.93 -28.70 13.97 55.49 0.78 -27.93 16 12 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 16 C 0.08 1.55 6.62 -2.53 -0.02 1.53 16 17 N -0.61 -9.36 3.08 -165.79 -0.51 -9.87 16 18 C 0.56 9.61 7.53 -12.48 -0.09 9.52 16 19 O -0.50 -10.50 15.45 5.29 0.08 -10.42 16 20 C -0.10 -1.35 5.21 -104.63 -0.55 -1.89 16 21 C -0.09 -0.92 6.54 -39.14 -0.26 -1.17 16 22 C -0.11 -0.84 9.93 -40.03 -0.40 -1.24 16 23 C -0.06 -0.55 9.97 -39.38 -0.39 -0.94 16 24 C 0.07 0.79 6.59 -84.82 -0.56 0.23 16 25 N -0.43 -4.74 10.46 -10.82 -0.11 -4.86 16 26 C 0.07 0.63 11.21 -17.24 -0.19 0.44 16 27 C 0.08 0.79 11.22 -17.19 -0.19 0.59 16 28 N -0.39 -5.86 8.59 -10.59 -0.09 -5.95 16 29 C 0.11 1.63 6.59 -84.53 -0.56 1.08 16 30 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 31 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.71 4.77 -51.93 -0.25 0.46 16 33 H 0.09 0.96 7.83 -51.93 -0.41 0.55 16 34 H 0.08 0.96 7.99 -51.93 -0.42 0.54 16 35 H 0.36 7.83 5.57 -40.82 -0.23 7.60 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.08 1.62 8.00 -51.93 -0.42 1.20 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.18 1.45 2.18 -54.61 -0.12 1.33 16 40 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -36.54 345.93 -8.48 -45.02 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.11 Total: 6.77 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -3.75 Total: 1.99 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.20 Total: -65.19 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.54 -8.48 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989602913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.173 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds