Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.00027 * 2 1 4 4 C 1.54346 * 109.77652 * 121.16314 * 2 1 3 5 5 C 1.55157 * 103.01924 * 97.49615 * 4 2 1 6 6 H 1.08992 * 111.00507 * 277.22935 * 5 4 2 7 7 N 1.46498 * 111.00538 * 153.37934 * 5 4 2 8 8 C 1.36932 * 120.00342 * 161.34999 * 7 5 4 9 9 H 1.08003 * 119.99900 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00074 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99974 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99987 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46803 * 90.00920 * 12 10 8 14 14 H 1.48506 * 109.47128 * 210.00424 * 12 10 8 15 15 H 1.48498 * 109.47216 * 330.00532 * 12 10 8 16 16 C 1.54910 * 101.58186 * 35.30740 * 5 4 2 17 17 N 1.47020 * 109.88274 * 238.89770 * 2 1 3 18 18 C 1.34778 * 125.64472 * 59.56187 * 17 2 1 19 19 O 1.21590 * 119.99880 * 183.89433 * 18 17 2 20 20 C 1.47514 * 119.99886 * 3.90168 * 18 17 2 21 21 C 1.38671 * 120.34079 * 6.74481 * 20 18 17 22 22 C 1.38985 * 120.63247 * 179.97438 * 21 20 18 23 23 C 1.36213 * 121.14469 * 359.73726 * 22 21 20 24 24 C 1.40691 * 120.16511 * 0.51720 * 23 22 21 25 25 N 1.33760 * 120.97077 * 179.77365 * 24 23 22 26 26 C 1.31333 * 119.73023 * 179.72452 * 25 24 23 27 27 C 1.39647 * 120.68335 * 359.97438 * 26 25 24 28 28 N 1.31447 * 120.64245 * 359.97438 * 27 26 25 29 29 C 1.33498 * 119.72217 * 0.04051 * 28 27 26 30 30 H 1.09001 * 109.47231 * 199.54402 * 1 2 3 31 31 H 1.09006 * 109.46774 * 319.54370 * 1 2 3 32 32 H 1.08996 * 109.47033 * 79.54080 * 1 2 3 33 33 H 1.08995 * 110.85057 * 339.02719 * 4 2 1 34 34 H 1.09004 * 110.66325 * 215.87636 * 4 2 1 35 35 H 0.97007 * 119.99461 * 341.34835 * 7 5 4 36 36 H 0.96995 * 119.99916 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.36479 * 204.15128 * 16 5 4 38 38 H 1.08998 * 110.37098 * 81.82668 * 16 5 4 39 39 H 1.07998 * 119.68191 * 0.02562 * 21 20 18 40 40 H 1.08003 * 119.42502 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.92170 * 180.25756 * 23 22 21 42 42 H 1.08003 * 119.66202 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.68088 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2428 5 6 2.3561 -2.1698 0.6916 6 1 1.4522 -2.7778 0.6581 7 7 3.3999 -2.8276 1.4814 8 6 3.5511 -4.1872 1.4192 9 1 2.9006 -4.7745 0.7882 10 6 4.5398 -4.8105 2.1681 11 7 4.6855 -6.1173 2.1079 12 14 5.6646 -3.7947 3.2601 13 1 5.0640 -3.6737 4.6128 14 1 6.9878 -4.4608 3.3637 15 1 5.8361 -2.4420 2.6718 16 6 2.8613 -1.8466 -0.7367 17 7 2.0300 -0.7142 -1.1838 18 6 1.7754 -0.3846 -2.4656 19 8 2.1845 -1.0901 -3.3675 20 6 1.0004 0.8319 -2.7744 21 6 0.6502 1.7147 -1.7639 22 6 -0.0795 2.8630 -2.0480 23 6 -0.4650 3.1556 -3.3212 24 6 -0.1364 2.2857 -4.3770 25 7 -0.5107 2.5551 -5.6326 26 6 -0.1861 1.7287 -6.6004 27 6 0.5469 0.5706 -6.3328 28 7 0.9263 0.2862 -5.1069 29 6 0.6075 1.1114 -4.1071 30 1 -0.3634 -0.9685 0.3438 31 1 -0.3633 0.7820 0.6669 32 1 -0.3633 0.1866 -1.0106 33 1 1.2885 -0.7951 2.0192 34 1 2.9601 -0.2827 1.6226 35 1 3.9840 -2.3001 2.0485 36 1 5.3766 -6.5528 2.6308 37 1 2.7178 -2.7049 -1.3930 38 1 3.9123 -1.5589 -0.7114 39 1 0.9480 1.5083 -0.7465 40 1 -0.3413 3.5373 -1.2460 41 1 -1.0279 4.0556 -3.5202 42 1 -0.4892 1.9470 -7.6138 43 1 0.8047 -0.0978 -7.1410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989602913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = 77.323799 kcal Electronic energy + Delta-G solvation = -27418.783733 eV Core-core repulsion = 23658.480681 eV Total energy + Delta-G solvation = -3760.303052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.66464 -41.39557 -38.88216 -38.41718 -36.33891 -35.72809 -33.86457 -32.76016 -32.14052 -31.77601 -30.05167 -27.25284 -26.26728 -25.94126 -25.02116 -24.44586 -22.89855 -21.82467 -20.65098 -20.08808 -19.83098 -18.79780 -17.87169 -17.55495 -17.18134 -16.60053 -16.40696 -16.30201 -15.96393 -15.52424 -15.42556 -15.10734 -14.88299 -14.71353 -14.65360 -14.24204 -14.00307 -13.51466 -13.46249 -13.16209 -13.03276 -12.90100 -12.76090 -12.65207 -12.61221 -12.42100 -12.27191 -11.94913 -11.91600 -11.84596 -11.40285 -11.14082 -11.01885 -9.99546 -9.98373 -9.82334 -9.55659 -9.36497 -8.04520 -5.41541 -1.04420 -0.47715 0.58104 1.38591 1.44214 1.50774 1.62939 1.81028 2.10090 2.48043 3.00115 3.04831 3.12566 3.15801 3.24991 3.37104 3.51756 3.65502 3.75441 3.92050 3.97230 3.99093 4.03350 4.21426 4.27951 4.33339 4.37350 4.41552 4.57008 4.71524 4.75974 4.79647 4.87933 4.98041 5.02254 5.14056 5.15215 5.19781 5.21900 5.30221 5.42763 5.62432 5.73898 6.18793 6.25256 6.49327 6.75465 7.04263 7.13704 7.76201 7.97907 9.16924 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002961 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.981994 B = 9455.294561 C =10258.731553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 H 0.125 0.875 4 C -0.124 4.124 5 C 0.171 3.829 6 H 0.057 0.943 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.049 0.951 10 C -0.064 4.064 11 N -0.985 5.985 12 Si 0.962 3.038 13 H -0.270 1.270 14 H -0.301 1.301 15 H -0.246 1.246 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.557 3.443 19 O -0.562 6.562 20 C -0.138 4.138 21 C -0.066 4.066 22 C -0.099 4.099 23 C -0.055 4.055 24 C 0.048 3.952 25 N -0.438 5.438 26 C 0.080 3.920 27 C 0.072 3.928 28 N -0.450 5.450 29 C 0.085 3.915 30 H 0.056 0.944 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.373 0.627 36 H 0.259 0.741 37 H 0.033 0.967 38 H 0.057 0.943 39 H 0.199 0.801 40 H 0.195 0.805 41 H 0.170 0.830 42 H 0.220 0.780 43 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 27.963 -8.300 32.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.011 3.989 3 H 0.142 0.858 4 C -0.162 4.162 5 C 0.061 3.939 6 H 0.075 0.925 7 N -0.378 5.378 8 C -0.371 4.371 9 H 0.067 0.933 10 C -0.255 4.255 11 N -0.634 5.634 12 Si 0.788 3.212 13 H -0.195 1.195 14 H -0.228 1.228 15 H -0.170 1.170 16 C -0.033 4.033 17 N -0.341 5.341 18 C 0.347 3.653 19 O -0.440 6.440 20 C -0.143 4.143 21 C -0.085 4.085 22 C -0.118 4.118 23 C -0.074 4.074 24 C -0.076 4.076 25 N -0.152 5.152 26 C -0.095 4.095 27 C -0.103 4.103 28 N -0.164 5.164 29 C -0.039 4.039 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.208 0.792 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.215 0.785 40 H 0.212 0.788 41 H 0.187 0.813 42 H 0.236 0.764 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -13.936 27.420 -8.656 31.953 hybrid contribution 1.243 -1.073 -0.164 1.650 sum -12.693 26.348 -8.820 30.547 Atomic orbital electron populations 1.22791 0.92800 1.04753 1.03484 1.22387 0.95906 0.96989 0.83572 0.85769 1.23034 1.03641 0.92689 0.96820 1.21374 0.90683 0.93809 0.88046 0.92457 1.42520 1.39083 1.03452 1.52712 1.18977 1.13307 0.83389 1.21461 0.93273 1.25620 1.01085 0.96634 1.02181 1.69910 1.37079 1.10000 1.46427 0.85319 0.77645 0.78982 0.79236 1.19549 1.22778 1.17016 1.22938 0.94390 0.87793 0.98220 1.48553 1.50008 1.30453 1.05076 1.18236 0.80274 0.85501 0.81258 1.90804 1.53605 1.53498 1.46132 1.19714 1.04441 0.97283 0.92862 1.23572 0.91860 0.91394 1.01685 1.21515 0.96134 0.96476 0.97701 1.21454 0.96896 0.98366 0.90726 1.19898 0.98828 0.94829 0.94055 1.68776 1.17447 1.29653 0.99302 1.24732 0.93433 0.90253 1.01130 1.24858 0.93333 0.97305 0.94800 1.68980 1.16964 1.29382 1.01064 1.19625 0.97527 0.93170 0.93623 0.92484 0.86027 0.92233 0.86739 0.88935 0.79242 0.93236 0.94852 0.92501 0.78475 0.78814 0.81279 0.76393 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 7.66 71.98 0.55 -2.14 16 2 C 0.11 2.18 2.73 45.35 0.12 2.31 16 3 H 0.13 1.50 6.06 -2.39 -0.01 1.49 16 4 C -0.12 -2.74 6.02 31.79 0.19 -2.55 16 5 C 0.17 6.15 3.69 46.38 0.17 6.33 16 6 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 7 N -0.73 -32.67 5.08 -316.39 -1.61 -34.28 16 8 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 9 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 10 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 11 N -0.98 -63.63 13.97 21.65 0.30 -63.32 16 12 Si 0.96 44.16 27.74 68.60 1.90 46.06 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 15 H -0.25 -9.92 6.52 99.48 0.65 -9.27 16 16 C 0.09 3.59 6.62 86.86 0.57 4.16 16 17 N -0.61 -18.99 3.08 -796.70 -2.45 -21.45 16 18 C 0.56 20.00 7.53 86.69 0.65 20.65 16 19 O -0.56 -25.93 15.45 -4.00 -0.06 -25.99 16 20 C -0.14 -3.80 5.21 -19.87 -0.10 -3.90 16 21 C -0.07 -1.04 6.54 22.55 0.15 -0.89 16 22 C -0.10 -0.95 9.93 21.98 0.22 -0.73 16 23 C -0.06 -0.76 9.97 22.40 0.22 -0.54 16 24 C 0.05 1.07 6.59 40.28 0.27 1.33 16 25 N -0.44 -8.98 10.46 -188.15 -1.97 -10.94 16 26 C 0.08 1.30 11.21 85.11 0.95 2.25 16 27 C 0.07 1.54 11.22 85.09 0.95 2.50 16 28 N -0.45 -14.46 8.59 -187.42 -1.61 -16.07 16 29 C 0.09 2.49 6.59 40.58 0.27 2.76 16 30 H 0.06 1.05 7.99 -2.39 -0.02 1.03 16 31 H 0.12 0.68 8.12 -2.38 -0.02 0.66 16 32 H 0.06 1.06 4.77 -2.39 -0.01 1.05 16 33 H 0.11 1.98 7.83 -2.39 -0.02 1.96 16 34 H 0.09 1.84 7.99 -2.39 -0.02 1.83 16 35 H 0.37 15.25 5.57 -92.70 -0.52 14.74 16 36 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.03 1.54 8.00 -2.39 -0.02 1.52 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.20 2.14 2.18 -4.90 -0.01 2.13 16 40 H 0.19 -0.08 8.06 -2.91 -0.02 -0.10 16 41 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.22 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -91.53 345.93 1.53 -90.00 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.49 Total: 20.51 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.54 Total: 15.48 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -7.34 Total: -146.06 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Total: -91.53 1.53 -90.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989602913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.321 kcal (2) G-P(sol) polarization free energy of solvation -91.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds