Wall clock time and date at job start Tue Mar 31 2020 14:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.00271 * 2 1 4 4 C 1.54332 * 109.99202 * 238.95729 * 2 1 3 5 5 C 1.55152 * 103.02655 * 218.66696 * 4 2 1 6 6 H 1.08997 * 111.00883 * 153.37763 * 5 4 2 7 7 N 1.46500 * 111.00680 * 277.23736 * 5 4 2 8 8 C 1.36936 * 120.00101 * 198.64912 * 7 5 4 9 9 H 1.07993 * 120.00151 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99963 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99795 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47142 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46944 * 120.00074 * 12 10 8 15 15 H 1.48500 * 109.47378 * 239.99770 * 12 10 8 16 16 C 1.54917 * 101.58050 * 35.30684 * 5 4 2 17 17 N 1.47021 * 109.88453 * 121.09429 * 2 1 3 18 18 C 1.34783 * 125.64774 * 298.39373 * 17 2 1 19 19 O 1.21591 * 120.00082 * 3.72791 * 18 17 2 20 20 C 1.47510 * 119.99890 * 183.72170 * 18 17 2 21 21 C 1.38675 * 120.34067 * 324.13801 * 20 18 17 22 22 C 1.38989 * 120.63072 * 179.97438 * 21 20 18 23 23 C 1.36220 * 121.14352 * 0.02619 * 22 21 20 24 24 C 1.40687 * 120.16909 * 0.25231 * 23 22 21 25 25 N 1.33754 * 120.96583 * 180.29114 * 24 23 22 26 26 C 1.31330 * 119.73106 * 179.73352 * 25 24 23 27 27 C 1.39653 * 120.68024 * 359.69295 * 26 25 24 28 28 N 1.31447 * 120.64284 * 0.02562 * 27 26 25 29 29 C 1.33489 * 119.72603 * 0.02562 * 28 27 26 30 30 H 1.09006 * 109.46971 * 300.36320 * 1 2 3 31 31 H 1.08995 * 109.47121 * 60.35590 * 1 2 3 32 32 H 1.08991 * 109.47356 * 180.36145 * 1 2 3 33 33 H 1.09002 * 110.84880 * 100.19795 * 4 2 1 34 34 H 1.08996 * 110.66725 * 337.05514 * 4 2 1 35 35 H 0.97002 * 119.99617 * 18.64285 * 7 5 4 36 36 H 0.97007 * 119.99544 * 180.02562 * 11 10 8 37 37 H 1.08997 * 110.36841 * 204.15456 * 16 5 4 38 38 H 1.08997 * 110.45492 * 81.87674 * 16 5 4 39 39 H 1.07994 * 119.68508 * 0.02562 * 21 20 18 40 40 H 1.07998 * 119.42735 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.91427 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.66256 * 179.71616 * 26 25 24 43 43 H 1.07996 * 119.67654 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 6 3.2863 -1.5185 -0.6914 6 1 3.4806 -2.4157 -1.2790 7 7 4.4699 -0.6563 -0.6463 8 6 5.7188 -1.2118 -0.5632 9 1 5.8312 -2.2853 -0.5306 10 6 6.8403 -0.3948 -0.5210 11 7 6.7032 0.9136 -0.5613 12 14 8.5439 -1.1525 -0.4069 13 1 8.4265 -2.6325 -0.3772 14 1 9.3474 -0.7438 -1.5871 15 1 9.2123 -0.6834 0.8334 16 6 2.8099 -1.8826 0.7370 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3619 2.4658 19 8 1.0861 0.5833 2.7201 20 6 2.4388 -1.1234 3.5600 21 6 2.6089 -2.4954 3.4515 22 6 3.2035 -3.2187 4.4786 23 6 3.6335 -2.6042 5.6157 24 6 3.4760 -1.2149 5.7715 25 7 3.8976 -0.5943 6.8788 26 6 3.7430 0.7045 6.9965 27 6 3.1482 1.4469 5.9740 28 7 2.7314 0.8591 4.8747 29 6 2.8772 -0.4603 4.7334 30 1 -0.3633 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 -0.3633 -1.0275 0.0065 33 1 2.3597 -0.0451 -2.0191 34 1 1.3066 -1.4405 -1.6224 35 1 4.3689 0.3080 -0.6754 36 1 7.4870 1.4845 -0.5321 37 1 3.6655 -2.0412 1.3933 38 1 2.1806 -2.7722 0.7134 39 1 2.2770 -3.0066 2.5600 40 1 3.3267 -4.2865 4.3734 41 1 4.0925 -3.1857 6.4016 42 1 4.0797 1.2038 7.8930 43 1 3.0295 2.5142 6.0877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989602914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:48 Heat of formation + Delta-G solvation = 62.860468 kcal Electronic energy + Delta-G solvation = -27975.238843 eV Core-core repulsion = 24214.308614 eV Total energy + Delta-G solvation = -3760.930229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47255 -39.81862 -37.55552 -37.01212 -34.67555 -33.97653 -32.12631 -31.32963 -30.88207 -30.06312 -28.44728 -25.84290 -25.26115 -24.30583 -23.96572 -23.52578 -21.46070 -20.10274 -19.26501 -18.73254 -17.80667 -17.26421 -16.82384 -16.43945 -15.88133 -15.19618 -15.04059 -14.80073 -14.57911 -14.18220 -13.99089 -13.82797 -13.61484 -13.29064 -13.12684 -12.75226 -12.32303 -12.12816 -11.98776 -11.86828 -11.79986 -11.65743 -11.57999 -11.55632 -11.15993 -10.96567 -10.74411 -10.64048 -10.32157 -10.01224 -9.75605 -9.65118 -9.09506 -9.01931 -8.94443 -8.58979 -8.19127 -7.05407 -5.84658 -3.15072 0.02539 0.51834 1.72942 2.63435 3.12328 3.37469 3.42290 3.42839 3.45638 3.94729 4.06647 4.12412 4.25192 4.50604 4.63594 4.66722 4.86832 4.98015 5.04217 5.13469 5.18654 5.26723 5.32809 5.48404 5.57068 5.63763 5.67355 5.71307 5.78938 5.87094 5.89348 5.97233 6.08347 6.11990 6.16753 6.22564 6.40477 6.43911 6.53198 6.58463 6.68642 6.83634 7.25103 7.61702 7.73786 7.93512 8.32414 8.56329 9.44359 9.99919 10.34083 11.37316 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.005203 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.477003 B = 5380.724763 C = 6909.550232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.071 0.929 7 N -0.711 5.711 8 C -0.247 4.247 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.292 1.292 16 C 0.061 3.939 17 N -0.593 5.593 18 C 0.576 3.424 19 O -0.520 6.520 20 C -0.081 4.081 21 C -0.068 4.068 22 C -0.103 4.103 23 C -0.067 4.067 24 C 0.072 3.928 25 N -0.427 5.427 26 C 0.073 3.927 27 C 0.075 3.925 28 N -0.396 5.396 29 C 0.115 3.885 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.175 0.825 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 -6.560 9.773 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.089 0.911 7 N -0.351 5.351 8 C -0.377 4.377 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.574 5.574 12 Si 0.736 3.264 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.219 1.219 16 C -0.065 4.065 17 N -0.326 5.326 18 C 0.364 3.636 19 O -0.397 6.397 20 C -0.085 4.085 21 C -0.088 4.088 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.052 4.052 25 N -0.141 5.141 26 C -0.103 4.103 27 C -0.100 4.100 28 N -0.109 5.109 29 C -0.010 4.010 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.192 0.808 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.673 -6.298 9.830 15.818 hybrid contribution 1.189 0.083 0.237 1.215 sum -9.484 -6.214 10.067 15.163 Atomic orbital electron populations 1.22140 0.95322 1.01723 1.02576 1.21471 0.93565 0.96743 0.84404 0.90774 1.23040 0.98105 1.00021 0.96417 1.21340 0.87050 0.94480 0.91516 0.91078 1.42341 1.00206 1.05274 1.87304 1.19238 0.83353 0.91775 1.43382 0.90921 1.24767 0.97938 0.95324 1.02481 1.69682 1.28829 1.02118 1.56761 0.86161 0.84781 0.78215 0.77270 1.20411 1.21737 1.21921 1.23630 0.94568 0.86826 1.01444 1.48271 1.51697 1.28479 1.04187 1.17421 0.81389 0.83728 0.81102 1.90758 1.37627 1.28209 1.83060 1.19805 1.01089 0.93771 0.93857 1.21836 0.95108 0.92743 0.99148 1.20934 0.97591 1.00946 0.92779 1.20919 0.97904 0.91540 0.98339 1.19484 0.98880 0.95521 0.91312 1.68663 1.13779 1.10475 1.21165 1.24048 0.95643 0.90589 0.99977 1.24187 0.94035 1.02198 0.89604 1.68846 1.11875 1.08671 1.21509 1.19230 0.97307 0.90546 0.93922 0.91392 0.92034 0.92912 0.89749 0.90662 0.77991 0.93441 0.89876 0.92534 0.83535 0.84007 0.84049 0.80847 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.11 37.16 0.34 -1.91 16 2 C 0.14 2.33 3.47 -66.95 -0.23 2.10 16 3 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.14 -2.06 6.05 -24.89 -0.15 -2.22 16 5 C 0.17 3.02 3.69 -65.78 -0.24 2.77 16 6 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 7 N -0.71 -16.87 5.27 -51.35 -0.27 -17.14 16 8 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 12 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 C 0.06 1.00 4.82 -2.52 -0.01 0.98 16 17 N -0.59 -10.45 3.06 -164.23 -0.50 -10.95 16 18 C 0.58 11.11 7.21 -12.48 -0.09 11.02 16 19 O -0.52 -11.30 14.91 5.29 0.08 -11.22 16 20 C -0.08 -1.40 5.55 -104.63 -0.58 -1.98 16 21 C -0.07 -0.91 7.90 -39.14 -0.31 -1.22 16 22 C -0.10 -1.15 9.93 -40.03 -0.40 -1.55 16 23 C -0.07 -0.84 9.97 -39.38 -0.39 -1.23 16 24 C 0.07 1.12 6.59 -84.82 -0.56 0.56 16 25 N -0.43 -6.10 10.46 -10.82 -0.11 -6.21 16 26 C 0.07 0.86 11.21 -17.24 -0.19 0.66 16 27 C 0.08 1.00 11.22 -17.19 -0.19 0.81 16 28 N -0.40 -7.19 9.14 -10.59 -0.10 -7.28 16 29 C 0.12 2.05 6.57 -84.52 -0.56 1.50 16 30 H 0.07 1.10 6.76 -51.93 -0.35 0.75 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 35 H 0.39 10.11 7.82 -40.82 -0.32 9.79 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 1.51 6.60 -51.93 -0.34 1.16 16 38 H 0.06 0.72 7.23 -51.93 -0.38 0.34 16 39 H 0.15 1.68 5.39 -52.49 -0.28 1.39 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -35.37 356.25 -9.08 -44.45 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.43 Total: 9.77 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -3.82 Total: 3.31 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.26 Total: -68.62 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.37 -9.08 -44.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989602914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.311 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds