Wall clock time and date at job start Tue Mar 31 2020 14:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.41349 * 2 1 4 4 C 1.54908 * 110.36992 * 122.29044 * 2 1 3 5 5 C 1.55151 * 101.58495 * 155.85092 * 4 2 1 6 6 H 1.08997 * 110.71955 * 82.86474 * 5 4 2 7 7 N 1.46501 * 110.72347 * 206.14074 * 5 4 2 8 8 C 1.36939 * 120.00028 * 199.97761 * 7 5 4 9 9 H 1.07997 * 120.00212 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99847 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00175 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47101 * 90.00070 * 12 10 8 14 14 H 1.48503 * 109.46889 * 209.99933 * 12 10 8 15 15 H 1.48492 * 109.47320 * 330.00211 * 12 10 8 16 16 C 1.54327 * 102.94400 * 324.50181 * 5 4 2 17 17 N 1.47025 * 107.39642 * 22.11345 * 16 5 4 18 18 C 1.34780 * 125.64568 * 181.10063 * 17 16 5 19 19 O 1.21551 * 120.00138 * 174.33288 * 18 17 16 20 20 C 1.47873 * 119.99797 * 354.33525 * 18 17 16 21 21 C 1.40619 * 119.75198 * 187.35712 * 20 18 17 22 22 C 1.35729 * 120.83566 * 179.97438 * 21 20 18 23 23 C 1.40705 * 120.08004 * 0.02562 * 22 21 20 24 24 N 1.33801 * 120.86074 * 180.02562 * 23 22 21 25 25 C 1.31330 * 119.76468 * 179.97438 * 24 23 22 26 26 C 1.39758 * 120.70952 * 0.02578 * 25 24 23 27 27 N 1.31272 * 120.67710 * 359.97438 * 26 25 24 28 28 C 1.33824 * 119.73512 * 0.02562 * 27 26 25 29 29 C 1.38405 * 119.75607 * 7.08232 * 20 18 17 30 30 H 1.08995 * 109.47259 * 297.70553 * 1 2 3 31 31 H 1.09000 * 109.47003 * 57.71095 * 1 2 3 32 32 H 1.09003 * 109.46937 * 177.70342 * 1 2 3 33 33 H 1.09010 * 111.00234 * 37.77865 * 4 2 1 34 34 H 1.09005 * 111.00773 * 273.93116 * 4 2 1 35 35 H 0.97003 * 120.00000 * 19.97067 * 7 5 4 36 36 H 0.96996 * 120.00048 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.88041 * 141.60640 * 16 5 4 38 38 H 1.09001 * 109.88512 * 262.62225 * 16 5 4 39 39 H 1.08005 * 119.58282 * 359.95772 * 21 20 18 40 40 H 1.08003 * 119.96259 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.64223 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.65959 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.25647 * 0.02939 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7758 1.2276 5 6 3.4778 -1.1996 0.7343 6 1 4.1944 -0.3900 0.8723 7 7 3.9250 -2.4127 1.4231 8 6 5.2569 -2.7291 1.4574 9 1 5.9776 -2.0845 0.9763 10 6 5.6807 -3.8783 2.1105 11 7 4.8025 -4.6636 2.6973 12 14 7.4977 -4.3094 2.1579 13 1 8.1208 -3.6963 3.3584 14 1 7.6549 -5.7849 2.2175 15 1 8.1618 -3.7898 0.9357 16 6 3.2495 -1.4767 -0.7666 17 7 2.0424 -0.7410 -1.1709 18 6 1.4977 -0.7424 -2.4037 19 8 0.4388 -0.1791 -2.6009 20 6 2.1882 -1.4294 -3.5163 21 6 1.6992 -1.2983 -4.8282 22 6 2.3160 -1.9188 -5.8658 23 6 3.4597 -2.7060 -5.6377 24 7 4.0804 -3.3241 -6.6491 25 6 5.1466 -4.0532 -6.4118 26 6 5.6415 -4.1919 -5.1121 27 7 5.0504 -3.5955 -4.1031 28 6 3.9623 -2.8471 -4.3194 29 6 3.3144 -2.1919 -3.2595 30 1 -0.3633 0.4778 0.9098 31 1 -0.3633 0.5490 -0.8688 32 1 -0.3633 -1.0269 -0.0412 33 1 1.4511 -1.6480 1.4409 34 1 2.1398 -0.1263 2.1002 35 1 3.2777 -2.9919 1.8550 36 1 5.0987 -5.4664 3.1540 37 1 4.1066 -1.1278 -1.3426 38 1 3.1042 -2.5448 -0.9285 39 1 0.8214 -0.6966 -5.0124 40 1 1.9286 -1.8081 -6.8679 41 1 5.6463 -4.5509 -7.2297 42 1 6.5194 -4.7960 -4.9362 43 1 3.6890 -2.2867 -2.2510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989768421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:55 Heat of formation + Delta-G solvation = 59.671769 kcal Electronic energy + Delta-G solvation = -27445.643466 eV Core-core repulsion = 23684.574965 eV Total energy + Delta-G solvation = -3761.068501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.56899 -41.45146 -39.03994 -38.05074 -36.03206 -35.88754 -33.69810 -33.21734 -31.92188 -31.14438 -30.13939 -27.41408 -26.50839 -25.91746 -25.52553 -23.54864 -23.35401 -21.83492 -20.98342 -19.71300 -19.23624 -18.83015 -18.15694 -17.52520 -17.38393 -16.74327 -16.34656 -16.05075 -15.79486 -15.59305 -15.37339 -15.29993 -14.88862 -14.75157 -14.56225 -14.34917 -13.74802 -13.37527 -13.23912 -13.15099 -12.93617 -12.90808 -12.84368 -12.82018 -12.78224 -12.74296 -12.26517 -12.11069 -11.91722 -11.72814 -11.57113 -11.02492 -10.77836 -10.13751 -10.13173 -9.76232 -9.72085 -9.06576 -7.94040 -5.24238 -1.05360 -0.64830 0.68817 1.24890 1.50644 1.51202 1.59522 1.79724 2.11735 2.57325 2.88918 2.92434 3.05434 3.15584 3.29576 3.36391 3.69494 3.74096 3.79948 3.84597 3.93706 3.99032 4.13863 4.15192 4.24497 4.38847 4.45860 4.49209 4.60484 4.63000 4.68490 4.73070 4.82113 4.86997 5.01207 5.09402 5.11545 5.15338 5.24602 5.31062 5.47901 5.53441 5.55391 6.18529 6.26262 6.36792 6.65111 6.96927 7.34780 8.04804 8.28661 9.28787 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.008570 B = 0.005049 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.302844 B = 5544.063044 C = 8560.401010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 H 0.096 0.904 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.076 0.924 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.080 0.920 10 C -0.067 4.067 11 N -0.967 5.967 12 Si 0.966 3.034 13 H -0.287 1.287 14 H -0.299 1.299 15 H -0.268 1.268 16 C 0.076 3.924 17 N -0.602 5.602 18 C 0.570 3.430 19 O -0.556 6.556 20 C -0.120 4.120 21 C -0.053 4.053 22 C -0.087 4.087 23 C 0.076 3.924 24 N -0.448 5.448 25 C 0.100 3.900 26 C 0.079 3.921 27 N -0.453 5.453 28 C 0.046 3.954 29 C -0.089 4.089 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.226 0.774 42 H 0.213 0.787 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 6.158 -16.781 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 H 0.114 0.886 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.094 0.906 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.098 0.902 10 C -0.259 4.259 11 N -0.617 5.617 12 Si 0.795 3.205 13 H -0.215 1.215 14 H -0.226 1.226 15 H -0.193 1.193 16 C -0.049 4.049 17 N -0.334 5.334 18 C 0.360 3.640 19 O -0.437 6.437 20 C -0.125 4.125 21 C -0.074 4.074 22 C -0.106 4.106 23 C -0.046 4.046 24 N -0.162 5.162 25 C -0.077 4.077 26 C -0.098 4.098 27 N -0.167 5.167 28 C -0.076 4.076 29 C -0.108 4.108 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.242 0.758 42 H 0.230 0.770 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.012 6.635 -16.843 18.352 hybrid contribution 0.872 -1.041 0.492 1.444 sum -2.140 5.595 -16.352 17.414 Atomic orbital electron populations 1.22052 0.93281 1.01949 1.03522 1.22154 0.95556 0.95784 0.83085 0.88643 1.23082 0.95340 1.00502 0.97430 1.21433 0.95179 0.89533 0.88466 0.90615 1.42510 1.05088 1.25166 1.63427 1.19600 0.85179 1.04870 1.27671 0.90198 1.25478 1.01306 0.98020 1.01138 1.69803 1.34202 1.15907 1.41755 0.85251 0.80710 0.76470 0.78025 1.21455 1.22580 1.19320 1.23431 0.86228 0.95511 0.99762 1.48618 1.28025 1.47586 1.09176 1.17987 0.84260 0.80099 0.81623 1.90685 1.22260 1.47350 1.83379 1.20038 0.96678 1.00740 0.95058 1.21086 0.99476 0.97200 0.89608 1.20920 0.93034 0.95465 1.01157 1.19940 0.97206 0.97799 0.89700 1.68812 1.08270 1.06504 1.32599 1.24979 0.91106 0.92703 0.98884 1.24913 1.00039 0.95616 0.89244 1.68755 1.06427 1.05423 1.36140 1.19620 0.95198 0.98951 0.93834 1.23084 0.93262 0.92792 1.01655 0.89727 0.91123 0.94135 0.91439 0.87847 0.79112 0.94061 0.90816 0.91830 0.82275 0.81266 0.75769 0.77014 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 8.51 71.98 0.61 -3.30 16 2 C 0.14 3.69 3.80 45.40 0.17 3.86 16 3 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.12 -3.64 6.11 31.98 0.20 -3.44 16 5 C 0.16 5.84 3.59 46.18 0.17 6.00 16 6 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 7 N -0.72 -33.62 5.18 -317.33 -1.64 -35.26 16 8 C -0.24 -12.52 9.98 84.03 0.84 -11.69 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 11 N -0.97 -57.07 13.06 21.65 0.28 -56.78 16 12 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.08 2.57 4.61 86.73 0.40 2.97 16 17 N -0.60 -18.68 3.25 -811.93 -2.64 -21.32 16 18 C 0.57 18.36 7.64 86.79 0.66 19.02 16 19 O -0.56 -19.20 13.96 -3.88 -0.05 -19.25 16 20 C -0.12 -3.60 5.87 -20.11 -0.12 -3.71 16 21 C -0.05 -1.33 9.49 22.27 0.21 -1.11 16 22 C -0.09 -1.99 9.95 22.29 0.22 -1.77 16 23 C 0.08 2.04 6.59 40.32 0.27 2.30 16 24 N -0.45 -10.19 10.46 -187.88 -1.96 -12.15 16 25 C 0.10 1.61 11.21 85.14 0.95 2.56 16 26 C 0.08 1.53 11.21 85.14 0.95 2.49 16 27 N -0.45 -13.52 10.46 -188.11 -1.97 -15.49 16 28 C 0.05 1.41 6.58 40.25 0.27 1.68 16 29 C -0.09 -2.83 8.59 22.85 0.20 -2.63 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.02 6.11 -2.39 -0.01 2.01 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 2.14 7.92 -2.38 -0.02 2.12 16 34 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.38 19.10 7.71 -92.71 -0.72 18.38 16 36 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.07 2.43 6.74 -2.39 -0.02 2.41 16 38 H 0.06 2.46 6.61 -2.39 -0.02 2.45 16 39 H 0.16 3.45 7.63 -2.91 -0.02 3.43 16 40 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.23 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.17 5.96 2.67 -11.07 -0.03 5.93 16 Total: -1.00 -70.22 352.88 0.84 -69.38 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.33 Total: 34.36 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 6.47 Total: 10.05 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -7.93 Total: -141.01 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.22 0.84 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989768421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.053 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds