Wall clock time and date at job start Tue Mar 31 2020 14:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99499 * 2 1 4 4 C 1.54335 * 109.99456 * 238.97207 * 2 1 3 5 5 C 1.55158 * 103.01685 * 218.66360 * 4 2 1 6 6 H 1.09005 * 111.00233 * 277.22413 * 5 4 2 7 7 N 1.46500 * 111.00218 * 153.37750 * 5 4 2 8 8 C 1.36943 * 119.99751 * 161.34632 * 7 5 4 9 9 H 1.07989 * 120.00220 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99788 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00011 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99846 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47277 * 59.99631 * 12 10 8 14 14 H 1.48506 * 109.47050 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47230 * 299.99638 * 12 10 8 16 16 C 1.54903 * 101.58500 * 35.30131 * 5 4 2 17 17 N 1.47014 * 109.88485 * 121.09795 * 2 1 3 18 18 C 1.34777 * 125.64986 * 298.39776 * 17 2 1 19 19 O 1.21552 * 120.00047 * 3.23614 * 18 17 2 20 20 C 1.47863 * 120.00321 * 183.23323 * 18 17 2 21 21 C 1.40616 * 119.75320 * 326.45472 * 20 18 17 22 22 C 1.35738 * 120.83288 * 179.97438 * 21 20 18 23 23 C 1.40701 * 120.08314 * 0.02963 * 22 21 20 24 24 N 1.33799 * 120.85375 * 179.90039 * 23 22 21 25 25 C 1.31331 * 119.76194 * 180.02562 * 24 23 22 26 26 C 1.39755 * 120.71008 * 0.02562 * 25 24 23 27 27 N 1.31283 * 120.67728 * 0.02562 * 26 25 24 28 28 C 1.33825 * 119.73526 * 359.97438 * 27 26 25 29 29 C 1.38418 * 119.75688 * 146.47245 * 20 18 17 30 30 H 1.09001 * 109.47400 * 300.34899 * 1 2 3 31 31 H 1.09001 * 109.47497 * 60.35654 * 1 2 3 32 32 H 1.09000 * 109.46759 * 180.35152 * 1 2 3 33 33 H 1.08994 * 110.85482 * 100.19289 * 4 2 1 34 34 H 1.09006 * 110.66273 * 337.03718 * 4 2 1 35 35 H 0.96998 * 120.00156 * 341.34740 * 7 5 4 36 36 H 0.96999 * 120.00084 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.36695 * 204.14971 * 16 5 4 38 38 H 1.09005 * 110.36577 * 81.83377 * 16 5 4 39 39 H 1.08003 * 119.58688 * 0.02562 * 21 20 18 40 40 H 1.08000 * 119.95726 * 179.74546 * 22 21 20 41 41 H 1.07995 * 119.64374 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.66535 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.24713 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0577 -0.7476 -1.2428 5 6 3.2864 -1.5181 -0.6916 6 1 4.1670 -0.8765 -0.6580 7 7 3.5477 -2.7239 -1.4815 8 6 4.7737 -3.3309 -1.4193 9 1 5.5477 -2.9210 -0.7877 10 6 5.0214 -4.4731 -2.1682 11 7 4.0778 -4.9731 -2.9376 12 14 6.6935 -5.3015 -2.0828 13 1 6.9665 -5.7226 -0.6852 14 1 6.7013 -6.4932 -2.9689 15 1 7.7417 -4.3476 -2.5261 16 6 2.8101 -1.8824 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.0934 0.5882 2.7198 20 6 2.4316 -1.1321 3.5628 21 6 2.6316 -2.5164 3.4181 22 6 3.2030 -3.2444 4.4110 23 6 3.6036 -2.6167 5.6048 24 7 4.1665 -3.3197 6.5943 25 6 4.5319 -2.7120 7.6997 26 6 4.3388 -1.3366 7.8554 27 7 3.7878 -0.6252 6.8995 28 6 3.4070 -1.2215 5.7636 29 6 2.8144 -0.4850 4.7250 30 1 -0.3634 0.5192 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3633 -1.0277 0.0063 33 1 2.3598 -0.0447 -2.0192 34 1 1.3067 -1.4404 -1.6226 35 1 2.8523 -3.0924 -2.0486 36 1 4.2508 -5.7714 -3.4607 37 1 3.6657 -2.0411 1.3930 38 1 2.1804 -2.7718 0.7113 39 1 2.3274 -3.0065 2.5050 40 1 3.3461 -4.3076 4.2864 41 1 4.9865 -3.2812 8.4970 42 1 4.6453 -0.8541 8.7717 43 1 2.6591 0.5785 4.8320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989768422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:59 Heat of formation + Delta-G solvation = 58.729316 kcal Electronic energy + Delta-G solvation = -27082.126061 eV Core-core repulsion = 23321.016692 eV Total energy + Delta-G solvation = -3761.109369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64179 -40.21867 -37.84065 -36.99820 -35.02176 -34.28425 -32.30765 -31.47049 -30.81056 -30.54883 -28.48953 -25.96573 -25.74901 -24.63209 -23.91917 -22.81337 -21.84835 -20.41533 -19.83542 -18.78330 -17.92787 -17.43933 -17.16371 -16.49786 -15.98344 -15.35379 -15.25580 -14.94152 -14.68845 -14.34745 -14.10426 -13.94738 -13.72475 -13.41682 -13.28880 -12.79240 -12.61649 -12.52969 -12.19962 -12.04123 -11.97527 -11.91729 -11.84511 -11.68550 -11.19313 -11.02818 -10.76412 -10.71327 -10.39544 -10.10649 -9.89466 -9.80941 -9.37768 -9.20635 -9.07209 -8.81983 -8.45657 -7.16654 -5.91580 -3.23036 -0.12692 0.21793 1.62955 2.23967 2.90465 3.11620 3.36085 3.41690 3.41897 3.76595 3.79917 3.87656 4.00334 4.34904 4.48804 4.56622 4.66472 4.82915 4.89202 5.03070 5.03533 5.12543 5.17644 5.41886 5.46238 5.50134 5.61726 5.64194 5.70906 5.75428 5.83309 5.90617 5.99442 6.04678 6.05742 6.11409 6.27164 6.34692 6.37267 6.39693 6.56877 6.74954 6.98217 7.44324 7.56917 7.63148 8.16889 8.25980 9.38086 9.90467 10.25501 11.30097 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.003952 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.735518 B = 7082.949544 C = 9475.832066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.172 3.828 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.005 4.005 11 N -0.929 5.929 12 Si 0.907 3.093 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.065 3.935 17 N -0.600 5.600 18 C 0.571 3.429 19 O -0.540 6.540 20 C -0.099 4.099 21 C -0.076 4.076 22 C -0.085 4.085 23 C 0.092 3.908 24 N -0.425 5.425 25 C 0.080 3.920 26 C 0.071 3.929 27 N -0.418 5.418 28 C 0.069 3.931 29 C -0.025 4.025 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 6.765 16.544 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.351 5.351 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.061 4.061 17 N -0.333 5.333 18 C 0.359 3.641 19 O -0.419 6.419 20 C -0.104 4.104 21 C -0.096 4.096 22 C -0.105 4.105 23 C -0.031 4.031 24 N -0.139 5.139 25 C -0.096 4.096 26 C -0.106 4.106 27 N -0.132 5.132 28 C -0.054 4.054 29 C -0.045 4.045 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.193 0.807 42 H 0.193 0.807 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.225 7.212 16.478 18.274 hybrid contribution 0.830 -0.816 0.027 1.164 sum -2.396 6.395 16.505 17.862 Atomic orbital electron populations 1.22144 0.94875 1.02350 1.02610 1.21562 0.94413 0.96126 0.84272 0.90738 1.23019 0.99035 0.99702 0.95755 1.21301 0.94723 0.89512 0.88502 0.91656 1.42306 1.14289 1.27529 1.50969 1.19186 0.90268 1.06384 1.22449 0.91009 1.24754 0.97881 0.98388 0.99165 1.69642 1.32523 1.24123 1.31260 0.86282 0.83623 0.78913 0.77439 1.21081 1.21584 1.21111 1.23825 0.94690 0.87378 1.00170 1.48517 1.51606 1.28837 1.04299 1.17776 0.81101 0.83705 0.81510 1.90761 1.38498 1.29197 1.83411 1.19982 1.01144 0.94340 0.94930 1.21566 0.95578 0.92710 0.99726 1.20751 0.97960 1.01223 0.90521 1.19691 0.97451 0.91093 0.94915 1.68743 1.07127 1.37970 1.00097 1.24135 0.95801 0.93862 0.95800 1.24072 0.95264 0.92699 0.98520 1.68660 1.06796 1.38099 0.99689 1.19387 1.00304 0.91823 0.93889 1.21083 0.93326 1.00745 0.89389 0.91397 0.91763 0.92449 0.90118 0.90205 0.77765 0.93208 0.90683 0.90719 0.82916 0.83457 0.80737 0.80732 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.11 37.16 0.34 -1.77 16 2 C 0.14 1.95 3.48 -66.95 -0.23 1.72 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.14 -1.99 6.11 -24.89 -0.15 -2.14 16 5 C 0.17 3.03 3.69 -65.78 -0.24 2.79 16 6 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 7 N -0.71 -15.95 5.28 -51.35 -0.27 -16.22 16 8 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 11 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 12 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.06 1.02 4.77 -2.53 -0.01 1.01 16 17 N -0.60 -8.99 3.06 -164.11 -0.50 -9.50 16 18 C 0.57 8.96 7.37 -12.32 -0.09 8.87 16 19 O -0.54 -9.65 15.68 5.32 0.08 -9.57 16 20 C -0.10 -1.40 5.57 -104.99 -0.58 -1.98 16 21 C -0.08 -0.99 7.79 -39.58 -0.31 -1.30 16 22 C -0.09 -1.09 9.95 -39.55 -0.39 -1.48 16 23 C 0.09 1.23 6.59 -84.72 -0.56 0.67 16 24 N -0.43 -5.19 10.46 -10.74 -0.11 -5.30 16 25 C 0.08 0.69 11.21 -17.20 -0.19 0.49 16 26 C 0.07 0.60 11.22 -17.22 -0.19 0.41 16 27 N -0.42 -5.12 10.46 -10.81 -0.11 -5.23 16 28 C 0.07 0.94 6.58 -84.81 -0.56 0.38 16 29 C -0.03 -0.35 9.56 -38.69 -0.37 -0.72 16 30 H 0.07 0.98 6.78 -51.93 -0.35 0.62 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.18 7.70 -51.93 -0.40 0.78 16 35 H 0.39 9.28 7.71 -40.82 -0.31 8.97 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 38 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 39 H 0.15 1.94 5.13 -52.48 -0.27 1.67 16 40 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.15 2.00 7.95 -52.48 -0.42 1.59 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -31.40 357.31 -9.02 -40.42 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.39 Total: 9.23 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.80 Total: 0.17 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.27 Total: -61.82 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.40 -9.02 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989768422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.150 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds