Wall clock time and date at job start Tue Mar 31 2020 14:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46912 * 2 1 4 4 O 1.21283 * 120.00097 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00076 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00031 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.32677 * 34.64191 * 6 5 3 8 8 C 1.53026 * 109.32628 * 154.11479 * 6 5 3 9 9 C 1.53967 * 108.82798 * 175.67440 * 8 6 5 10 10 H 1.09000 * 112.99660 * 168.08291 * 9 8 6 11 11 C 1.55430 * 106.41740 * 293.81645 * 9 8 6 12 12 C 1.55177 * 100.34936 * 73.37766 * 11 9 8 13 13 H 1.08997 * 113.04477 * 162.99127 * 12 11 9 14 14 C 1.52988 * 109.32256 * 275.00086 * 6 5 3 15 15 N 1.47784 * 104.25529 * 40.55548 * 12 11 9 16 16 C 1.34775 * 125.85834 * 153.55256 * 15 12 11 17 17 O 1.21283 * 119.99830 * 359.97438 * 16 15 12 18 18 C 1.50703 * 120.00436 * 179.97438 * 16 15 12 19 19 S 1.80995 * 109.47520 * 180.02562 * 18 16 15 20 20 C 1.76192 * 100.00046 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00428 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99866 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00237 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99899 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47330 * 89.99999 * 24 22 20 26 26 H 1.48498 * 109.47253 * 210.00370 * 24 22 20 27 27 H 1.48503 * 109.47295 * 330.00307 * 24 22 20 28 28 C 1.47086 * 108.28865 * 333.52988 * 15 12 11 29 29 H 1.09009 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47181 * 299.99238 * 1 2 3 31 31 H 1.08997 * 109.47379 * 60.00466 * 1 2 3 32 32 H 1.08999 * 109.47216 * 240.00010 * 2 1 3 33 33 H 1.09000 * 109.46987 * 119.99856 * 2 1 3 34 34 H 0.97003 * 119.99615 * 0.02562 * 5 3 2 35 35 H 1.08999 * 109.58033 * 295.47704 * 8 6 5 36 36 H 1.08998 * 109.57981 * 55.73889 * 8 6 5 37 37 H 1.08993 * 111.22999 * 315.60430 * 11 9 8 38 38 H 1.08996 * 111.23891 * 191.15203 * 11 9 8 39 39 H 1.08999 * 109.53757 * 64.75392 * 14 6 5 40 40 H 1.09006 * 109.53261 * 304.52913 * 14 6 5 41 41 H 1.09006 * 109.46732 * 300.00045 * 18 16 15 42 42 H 1.08998 * 109.46809 * 59.99761 * 18 16 15 43 43 H 0.96994 * 120.00579 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.97745 * 120.46365 * 28 15 12 45 45 H 1.08999 * 109.97743 * 241.75052 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 3.1678 3.6703 0.5857 8 6 5.2391 3.0927 0.6320 9 6 5.7860 4.5282 0.5285 10 1 6.6783 4.6886 1.1336 11 6 5.9925 4.8115 -0.9858 12 6 4.5185 4.9754 -1.4423 13 1 4.4238 5.4673 -2.4103 14 6 3.8962 3.5680 -1.4369 15 7 3.8837 5.7463 -0.3529 16 6 2.8089 6.5499 -0.4769 17 8 2.2769 6.6886 -1.5579 18 6 2.2681 7.2764 0.7277 19 16 0.8334 8.2667 0.2414 20 6 0.4164 8.9849 1.7953 21 1 1.0026 8.7530 2.6722 22 6 -0.6650 9.8497 1.8923 23 7 -1.3793 10.1328 0.8235 24 14 -1.1067 10.6117 3.5395 25 1 -0.3816 11.8976 3.7005 26 1 -2.5700 10.8583 3.5945 27 1 -0.7195 9.6849 4.6334 28 6 4.6257 5.4856 0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9877 0.9299 0.0005 35 1 5.1749 2.8010 1.6803 36 1 5.9017 2.4082 0.1024 37 1 6.4685 3.9670 -1.4840 38 1 6.5586 5.7297 -1.1421 39 1 2.8859 3.6147 -1.8434 40 1 4.5042 2.8983 -2.0453 41 1 1.9691 6.5516 1.4850 42 1 3.0399 7.9296 1.1347 43 1 -2.1351 10.7368 0.8913 44 1 5.0234 6.4187 1.2890 45 1 3.9703 5.0159 1.6235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047183638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:39 Heat of formation + Delta-G solvation = -74.003846 kcal Electronic energy + Delta-G solvation = -26285.339479 eV Core-core repulsion = 22621.625568 eV Total energy + Delta-G solvation = -3663.713911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30078 -39.53450 -37.91158 -35.07217 -33.04213 -32.48542 -32.35658 -31.48344 -29.68275 -28.45559 -25.88039 -25.40453 -24.77243 -22.20032 -22.14850 -20.51075 -19.77509 -18.97248 -17.74548 -17.27919 -16.98256 -16.32024 -15.68772 -15.25492 -15.16208 -14.74983 -14.66633 -14.11169 -13.98342 -13.77957 -13.65789 -13.54462 -12.90295 -12.80118 -12.60966 -12.55275 -12.44859 -12.25313 -12.13148 -11.90770 -11.74009 -11.43668 -11.33923 -11.13311 -11.00964 -10.95499 -10.70602 -10.67875 -10.45793 -9.83818 -9.74530 -9.29813 -9.18008 -9.00031 -8.41683 -8.14473 -6.41323 -6.14679 -3.84267 2.58217 2.93478 3.02236 3.18576 3.26765 3.30469 3.35047 3.69187 4.15291 4.25462 4.28207 4.41719 4.61395 4.75541 4.84963 4.86306 4.93146 4.96955 5.04307 5.10814 5.19522 5.20246 5.25098 5.33665 5.36089 5.53694 5.55991 5.59988 5.63574 5.69254 5.76586 5.77321 5.85122 5.93796 6.00879 6.02826 6.10093 6.16208 6.22967 6.37312 6.53568 7.35207 7.65964 7.77886 8.17315 8.41977 8.67276 9.30291 10.92885 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.003575 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.309597 B = 7831.317631 C = 9167.488852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.503 3.497 4 O -0.522 6.522 5 N -0.733 5.733 6 C 0.142 3.858 7 H 0.096 0.904 8 C -0.122 4.122 9 C -0.096 4.096 10 H 0.107 0.893 11 C -0.128 4.128 12 C 0.139 3.861 13 H 0.101 0.899 14 C -0.139 4.139 15 N -0.622 5.622 16 C 0.552 3.448 17 O -0.514 6.514 18 C -0.146 4.146 19 S -0.059 6.059 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.101 3.899 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.396 0.604 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.103 -21.916 -0.156 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.289 3.711 4 O -0.397 6.397 5 N -0.385 5.385 6 C 0.037 3.963 7 H 0.114 0.886 8 C -0.160 4.160 9 C -0.115 4.115 10 H 0.125 0.875 11 C -0.166 4.166 12 C 0.035 3.965 13 H 0.119 0.881 14 C -0.178 4.178 15 N -0.359 5.359 16 C 0.341 3.659 17 O -0.387 6.387 18 C -0.296 4.296 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.023 4.023 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.229 0.771 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.445 -20.874 -1.832 26.636 hybrid contribution 0.667 -0.109 2.374 2.468 sum 17.111 -20.983 0.542 27.081 Atomic orbital electron populations 1.21545 0.92894 1.01465 1.03801 1.21623 0.98882 0.93769 1.03932 1.20876 0.82239 0.91977 0.75996 1.90828 1.54995 1.46324 1.47553 1.46121 1.07164 1.08501 1.76667 1.21076 0.95547 0.82720 0.96931 0.88615 1.22087 0.95525 0.97011 1.01351 1.22590 0.97794 0.93915 0.97211 0.87524 1.23062 0.95861 1.02567 0.95068 1.22118 0.91049 0.90698 0.92645 0.88053 1.22465 1.02588 0.96128 0.96661 1.48662 1.30560 1.47238 1.09472 1.19979 0.77986 0.77535 0.90448 1.90701 1.57131 1.62405 1.28503 1.23496 1.04965 1.02613 0.98542 1.85393 1.29025 1.54114 1.14744 1.22864 1.17890 1.32314 0.95140 0.91013 1.24980 0.95152 0.95785 0.97639 1.70018 1.17963 1.33983 1.28352 0.86179 0.77727 0.79307 0.82349 1.20303 1.20756 1.19713 1.22165 0.93189 0.99157 0.87749 0.92192 0.91799 0.91790 0.89179 0.89180 0.77052 0.90965 0.90985 0.89732 0.90397 0.90797 0.91222 0.89460 0.89457 0.92238 0.91177 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.20 37.16 0.34 -0.98 16 2 C -0.14 -1.11 6.42 -27.88 -0.18 -1.29 16 3 C 0.50 6.01 7.79 -10.99 -0.09 5.92 16 4 O -0.52 -9.38 15.63 5.55 0.09 -9.30 16 5 N -0.73 -6.58 5.06 -53.80 -0.27 -6.86 16 6 C 0.14 1.50 2.08 -67.93 -0.14 1.36 16 7 H 0.10 1.41 5.36 -51.93 -0.28 1.13 16 8 C -0.12 -0.84 4.96 -26.21 -0.13 -0.97 16 9 C -0.10 -0.71 4.33 -87.92 -0.38 -1.09 16 10 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 11 C -0.13 -1.02 6.18 -24.29 -0.15 -1.17 16 12 C 0.14 1.72 3.99 -65.61 -0.26 1.45 16 13 H 0.10 1.39 8.01 -51.93 -0.42 0.98 16 14 C -0.14 -1.64 5.28 -26.28 -0.14 -1.78 16 15 N -0.62 -9.44 2.36 -161.81 -0.38 -9.82 16 16 C 0.55 11.49 7.88 -10.98 -0.09 11.40 16 17 O -0.51 -12.74 16.11 5.55 0.09 -12.65 16 18 C -0.15 -3.23 5.36 36.01 0.19 -3.03 16 19 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 20 C -0.53 -15.86 9.50 30.94 0.29 -15.56 16 21 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -27.03 13.22 55.49 0.73 -26.30 16 24 Si 0.92 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.10 1.13 5.23 -2.82 -0.01 1.12 16 29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 2.06 8.61 -40.82 -0.35 1.71 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.35 7.98 -51.93 -0.41 -0.06 16 37 H 0.08 0.50 7.75 -51.93 -0.40 0.10 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 41 H 0.09 1.86 8.14 -51.91 -0.42 1.44 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -39.06 373.74 -9.42 -48.48 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.24 Total: 0.20 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.84 Total: -2.53 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.08 Total: -42.98 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.18 Total: -21.95 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.06 -9.42 -48.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047183638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.522 kcal (2) G-P(sol) polarization free energy of solvation -39.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds