Wall clock time and date at job start Tue Mar 31 2020 14:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47253 * 2 1 4 4 O 1.21283 * 119.99589 * 4.45622 * 3 2 1 5 5 N 1.34772 * 120.00093 * 184.45409 * 3 2 1 6 6 C 1.46493 * 120.00194 * 175.01736 * 5 3 2 7 7 H 1.09005 * 109.32314 * 50.76552 * 6 5 3 8 8 C 1.52631 * 109.53697 * 291.27137 * 6 5 3 9 9 C 1.53970 * 108.85779 * 295.46498 * 8 6 5 10 10 H 1.08997 * 113.67519 * 168.18125 * 9 8 6 11 11 C 1.55423 * 106.41777 * 293.45340 * 9 8 6 12 12 C 1.55416 * 100.25190 * 73.21705 * 11 9 8 13 13 H 1.09006 * 112.47928 * 162.86637 * 12 11 9 14 14 C 1.52985 * 109.32836 * 170.40783 * 6 5 3 15 15 N 1.47792 * 104.13350 * 40.82899 * 12 11 9 16 16 C 1.34783 * 125.85527 * 153.47996 * 15 12 11 17 17 O 1.21285 * 119.99548 * 4.90556 * 16 15 12 18 18 C 1.50691 * 119.99836 * 184.89981 * 16 15 12 19 19 S 1.81002 * 109.47137 * 174.59943 * 18 16 15 20 20 C 1.76201 * 100.00237 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00020 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99959 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00270 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99615 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46587 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47267 * 299.99927 * 24 22 20 27 27 H 1.48494 * 109.47120 * 60.00329 * 24 22 20 28 28 C 1.47080 * 108.28564 * 333.21708 * 15 12 11 29 29 H 1.09000 * 109.47060 * 59.99682 * 1 2 3 30 30 H 1.09003 * 109.46963 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47153 * 299.99597 * 1 2 3 32 32 H 1.09007 * 109.46714 * 240.00132 * 2 1 3 33 33 H 1.08993 * 109.47363 * 120.00609 * 2 1 3 34 34 H 0.97001 * 120.00034 * 355.02264 * 5 3 2 35 35 H 1.09008 * 109.86807 * 175.47631 * 8 6 5 36 36 H 1.08999 * 109.26087 * 55.09935 * 8 6 5 37 37 H 1.09002 * 111.23801 * 191.15206 * 11 9 8 38 38 H 1.08998 * 111.23609 * 315.55589 * 11 9 8 39 39 H 1.09004 * 109.53276 * 305.28865 * 14 6 5 40 40 H 1.09003 * 109.59372 * 185.10308 * 14 6 5 41 41 H 1.09000 * 109.47576 * 54.59530 * 18 16 15 42 42 H 1.09006 * 109.47086 * 294.59403 * 18 16 15 43 43 H 0.96999 * 119.99848 * 359.97438 * 23 22 20 44 44 H 1.09005 * 109.97334 * 120.69831 * 28 15 12 45 45 H 1.09000 * 109.97765 * 241.93908 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2472 2.3416 0.0816 5 7 3.3541 1.6683 -0.0906 6 6 3.8353 3.0475 -0.2007 7 1 3.3859 3.6503 0.5886 8 6 3.4343 3.6213 -1.5570 9 6 4.1552 2.8311 -2.6645 10 1 3.7757 3.0352 -3.6656 11 6 5.6705 3.1405 -2.5095 12 6 5.9918 2.3160 -1.2318 13 1 7.0609 2.1464 -1.1031 14 6 5.3574 3.0665 -0.0478 15 7 5.2387 1.0576 -1.4155 16 6 5.5555 -0.1375 -0.8789 17 8 6.4840 -0.2271 -0.1036 18 6 4.7561 -1.3621 -1.2420 19 16 5.5170 -2.8235 -0.4927 20 6 4.4118 -4.0711 -1.0642 21 1 3.5700 -3.8034 -1.6856 22 6 4.6229 -5.3979 -0.7156 23 7 5.6485 -5.7242 0.0423 24 14 3.4506 -6.7204 -1.3209 25 1 3.8928 -8.0439 -0.8129 26 1 2.0809 -6.4327 -0.8247 27 1 3.4461 -6.7360 -2.8058 28 6 4.0808 1.3346 -2.2791 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9868 0.9330 -0.0831 35 1 3.7191 4.6720 -1.6136 36 1 2.3558 3.5259 -1.6831 37 1 6.2368 2.7805 -3.3685 38 1 5.8414 4.2043 -2.3451 39 1 5.6360 2.5771 0.8855 40 1 5.7109 4.0976 -0.0383 41 1 4.7390 -1.4768 -2.3258 42 1 3.7365 -1.2534 -0.8720 43 1 6.2569 -5.0374 0.3569 44 1 4.1286 0.7164 -3.1756 45 1 3.1562 1.1343 -1.7377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047183639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:42 Heat of formation + Delta-G solvation = -29.878912 kcal Electronic energy + Delta-G solvation = -27601.056366 eV Core-core repulsion = 23939.255856 eV Total energy + Delta-G solvation = -3661.800510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28455 -39.25383 -38.22607 -34.42902 -33.71298 -32.60783 -32.59347 -31.77477 -29.85100 -28.58071 -25.90861 -24.91734 -24.65266 -22.49717 -22.21507 -20.55860 -20.07311 -19.13791 -18.35127 -17.58051 -16.81347 -16.42836 -15.86357 -15.55343 -15.23154 -15.06482 -14.30014 -14.24229 -13.88492 -13.77178 -13.64623 -13.28291 -13.12895 -12.88106 -12.75454 -12.59361 -12.54430 -12.42963 -12.24025 -12.02753 -11.86286 -11.83762 -11.67147 -11.19919 -11.15632 -10.96809 -10.70713 -10.43399 -10.22095 -9.80555 -9.71197 -9.65234 -9.08230 -8.85481 -8.52855 -8.31855 -6.77207 -6.68668 -4.08444 2.54306 2.57502 2.75008 3.14535 3.25684 3.33477 3.34712 3.53362 4.08817 4.18503 4.22292 4.40189 4.61347 4.72420 4.78933 4.80393 4.90132 4.97727 5.04147 5.09613 5.15958 5.16169 5.26820 5.32470 5.37403 5.44440 5.48838 5.53802 5.60764 5.61958 5.71131 5.75620 5.81742 5.87973 5.90200 5.90579 5.93192 5.98322 6.17621 6.21289 6.43172 7.37926 7.44480 7.84410 8.15937 8.21859 8.42994 9.19537 10.74971 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.004366 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.505343 B = 6412.040220 C = 7596.767473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C 0.505 3.495 4 O -0.544 6.544 5 N -0.726 5.726 6 C 0.150 3.850 7 H 0.080 0.920 8 C -0.129 4.129 9 C -0.097 4.097 10 H 0.102 0.898 11 C -0.128 4.128 12 C 0.133 3.867 13 H 0.104 0.896 14 C -0.140 4.140 15 N -0.618 5.618 16 C 0.535 3.465 17 O -0.506 6.506 18 C -0.133 4.133 19 S -0.110 6.110 20 C -0.609 4.609 21 H 0.066 0.934 22 C 0.038 3.962 23 N -0.882 5.882 24 Si 1.082 2.918 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.285 1.285 28 C 0.073 3.927 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.406 0.594 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.277 0.723 44 H 0.061 0.939 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 19.447 -5.278 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.292 3.708 4 O -0.422 6.422 5 N -0.389 5.389 6 C 0.046 3.954 7 H 0.098 0.902 8 C -0.167 4.167 9 C -0.115 4.115 10 H 0.120 0.880 11 C -0.166 4.166 12 C 0.029 3.971 13 H 0.122 0.878 14 C -0.178 4.178 15 N -0.358 5.358 16 C 0.323 3.677 17 O -0.380 6.380 18 C -0.284 4.284 19 S 0.116 5.884 20 C -0.757 4.757 21 H 0.085 0.915 22 C -0.173 4.173 23 N -0.516 5.516 24 Si 0.908 3.092 25 H -0.202 1.202 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.050 4.050 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.252 0.748 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.269 18.201 -4.029 19.125 hybrid contribution -0.594 1.342 -1.030 1.793 sum -4.863 19.544 -5.059 20.765 Atomic orbital electron populations 1.21490 0.92660 1.01899 1.02941 1.21809 0.99066 0.93578 1.05077 1.20888 0.82311 0.92023 0.75567 1.90651 1.55675 1.46522 1.49302 1.47440 1.08018 1.09998 1.73432 1.20731 0.93647 0.83300 0.97741 0.90174 1.22088 1.01626 0.99292 0.93680 1.22590 0.95850 0.93786 0.99314 0.88014 1.23121 0.95827 1.00246 0.97374 1.22309 0.97049 0.82915 0.94787 0.87848 1.22369 0.94107 1.01773 0.99594 1.48985 1.27990 1.08297 1.50497 1.20146 0.84778 0.82591 0.80155 1.90746 1.29366 1.84489 1.33377 1.23445 1.02489 0.97023 1.05411 1.84868 1.39673 0.96289 1.67571 1.23676 1.15649 0.95135 1.41196 0.91530 1.26034 0.99035 0.97822 0.94414 1.70812 1.13063 1.37494 1.30218 0.83354 0.74517 0.75328 0.76011 1.20245 1.21040 1.21103 1.22949 0.91223 0.96508 0.94299 0.92233 0.91742 0.92012 0.88909 0.88336 0.74808 0.90415 0.90255 0.90514 0.89489 0.90523 0.89195 0.88769 0.89144 0.91008 0.92029 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.21 37.16 0.34 -1.19 16 2 C -0.16 -1.95 5.98 -27.88 -0.17 -2.12 16 3 C 0.50 6.85 6.04 -10.99 -0.07 6.79 16 4 O -0.54 -8.54 14.85 5.56 0.08 -8.46 16 5 N -0.73 -9.16 2.78 -54.00 -0.15 -9.31 16 6 C 0.15 1.60 2.71 -68.13 -0.18 1.42 16 7 H 0.08 0.91 7.99 -51.93 -0.42 0.49 16 8 C -0.13 -1.15 5.15 -26.41 -0.14 -1.28 16 9 C -0.10 -0.81 4.33 -87.92 -0.38 -1.19 16 10 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.13 -1.00 6.20 -24.16 -0.15 -1.14 16 12 C 0.13 1.42 3.97 -65.48 -0.26 1.16 16 13 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 14 C -0.14 -1.36 5.42 -26.28 -0.14 -1.50 16 15 N -0.62 -8.10 1.73 -161.66 -0.28 -8.38 16 16 C 0.53 9.39 6.02 -10.99 -0.07 9.33 16 17 O -0.51 -10.72 16.17 5.55 0.09 -10.63 16 18 C -0.13 -2.54 5.33 36.00 0.19 -2.34 16 19 S -0.11 -2.82 19.61 -107.50 -2.11 -4.93 16 20 C -0.61 -16.78 9.50 30.94 0.29 -16.48 16 21 H 0.07 1.75 7.80 -52.49 -0.41 1.34 16 22 C 0.04 1.06 5.49 -17.43 -0.10 0.97 16 23 N -0.88 -26.70 13.67 55.49 0.76 -25.94 16 24 Si 1.08 24.18 29.92 -169.99 -5.09 19.09 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.07 0.80 5.02 -2.82 -0.01 0.79 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.09 1.12 6.42 -51.92 -0.33 0.78 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.41 5.62 3.82 -40.82 -0.16 5.46 16 35 H 0.08 0.55 7.97 -51.92 -0.41 0.13 16 36 H 0.08 0.85 6.89 -51.93 -0.36 0.50 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.51 7.76 -51.93 -0.40 0.11 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.63 8.02 -51.93 -0.42 0.22 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.57 6.20 -51.91 -0.32 1.25 16 43 H 0.28 8.57 7.12 -40.82 -0.29 8.28 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 1.16 3.49 -60.28 -0.21 0.95 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -33.73 355.16 -8.92 -42.64 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.74 Total: 7.38 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.83 Total: -6.82 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.33 Total: -43.64 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.17 Total: -19.09 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.09 Total: 19.09 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.11 Total: -4.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.73 -8.92 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047183639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.765 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds