Wall clock time and date at job start Tue Mar 31 2020 14:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47253 * 2 1 4 4 O 1.21283 * 119.99589 * 4.45622 * 3 2 1 5 5 N 1.34772 * 120.00093 * 184.45409 * 3 2 1 6 6 C 1.46493 * 120.00194 * 175.01736 * 5 3 2 7 7 H 1.09005 * 109.32314 * 50.76552 * 6 5 3 8 8 C 1.52631 * 109.53697 * 291.27137 * 6 5 3 9 9 C 1.53970 * 108.85779 * 295.46498 * 8 6 5 10 10 H 1.08997 * 113.67519 * 168.18125 * 9 8 6 11 11 C 1.55423 * 106.41777 * 293.45340 * 9 8 6 12 12 C 1.55416 * 100.25190 * 73.21705 * 11 9 8 13 13 H 1.09006 * 112.47928 * 162.86637 * 12 11 9 14 14 C 1.52985 * 109.32836 * 170.40783 * 6 5 3 15 15 N 1.47792 * 104.13350 * 40.82899 * 12 11 9 16 16 C 1.34783 * 125.85527 * 153.47996 * 15 12 11 17 17 O 1.21285 * 119.99548 * 4.90556 * 16 15 12 18 18 C 1.50691 * 119.99836 * 184.89981 * 16 15 12 19 19 S 1.81002 * 109.47137 * 174.59943 * 18 16 15 20 20 C 1.76201 * 100.00237 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00020 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99959 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00270 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99615 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46587 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.47267 * 299.99927 * 24 22 20 27 27 H 1.48494 * 109.47120 * 60.00329 * 24 22 20 28 28 C 1.47080 * 108.28564 * 333.21708 * 15 12 11 29 29 H 1.09000 * 109.47060 * 59.99682 * 1 2 3 30 30 H 1.09003 * 109.46963 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47153 * 299.99597 * 1 2 3 32 32 H 1.09007 * 109.46714 * 240.00132 * 2 1 3 33 33 H 1.08993 * 109.47363 * 120.00609 * 2 1 3 34 34 H 0.97001 * 120.00034 * 355.02264 * 5 3 2 35 35 H 1.09008 * 109.86807 * 175.47631 * 8 6 5 36 36 H 1.08999 * 109.26087 * 55.09935 * 8 6 5 37 37 H 1.09002 * 111.23801 * 191.15206 * 11 9 8 38 38 H 1.08998 * 111.23609 * 315.55589 * 11 9 8 39 39 H 1.09004 * 109.53276 * 305.28865 * 14 6 5 40 40 H 1.09003 * 109.59372 * 185.10308 * 14 6 5 41 41 H 1.09000 * 109.47576 * 54.59530 * 18 16 15 42 42 H 1.09006 * 109.47086 * 294.59403 * 18 16 15 43 43 H 0.96999 * 119.99848 * 359.97438 * 23 22 20 44 44 H 1.09005 * 109.97334 * 120.69831 * 28 15 12 45 45 H 1.09000 * 109.97765 * 241.93908 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2472 2.3416 0.0816 5 7 3.3541 1.6683 -0.0906 6 6 3.8353 3.0475 -0.2007 7 1 3.3859 3.6503 0.5886 8 6 3.4343 3.6213 -1.5570 9 6 4.1552 2.8311 -2.6645 10 1 3.7757 3.0352 -3.6656 11 6 5.6705 3.1405 -2.5095 12 6 5.9918 2.3160 -1.2318 13 1 7.0609 2.1464 -1.1031 14 6 5.3574 3.0665 -0.0478 15 7 5.2387 1.0576 -1.4155 16 6 5.5555 -0.1375 -0.8789 17 8 6.4840 -0.2271 -0.1036 18 6 4.7561 -1.3621 -1.2420 19 16 5.5170 -2.8235 -0.4927 20 6 4.4118 -4.0711 -1.0642 21 1 3.5700 -3.8034 -1.6856 22 6 4.6229 -5.3979 -0.7156 23 7 5.6485 -5.7242 0.0423 24 14 3.4506 -6.7204 -1.3209 25 1 3.8928 -8.0439 -0.8129 26 1 2.0809 -6.4327 -0.8247 27 1 3.4461 -6.7360 -2.8058 28 6 4.0808 1.3346 -2.2791 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9868 0.9330 -0.0831 35 1 3.7191 4.6720 -1.6136 36 1 2.3558 3.5259 -1.6831 37 1 6.2368 2.7805 -3.3685 38 1 5.8414 4.2043 -2.3451 39 1 5.6360 2.5771 0.8855 40 1 5.7109 4.0976 -0.0383 41 1 4.7390 -1.4768 -2.3258 42 1 3.7365 -1.2534 -0.8720 43 1 6.2569 -5.0374 0.3569 44 1 4.1286 0.7164 -3.1756 45 1 3.1562 1.1343 -1.7377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047183639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:41 Heat of formation + Delta-G solvation = -50.573758 kcal Electronic energy + Delta-G solvation = -27601.953762 eV Core-core repulsion = 23939.255856 eV Total energy + Delta-G solvation = -3662.697906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.24576 -40.42906 -39.45273 -35.43878 -34.81003 -34.74083 -33.60735 -32.60433 -31.12535 -29.64046 -27.10518 -26.77685 -25.59519 -23.48149 -23.08328 -21.57727 -20.98465 -20.56628 -19.98105 -18.72844 -18.01483 -17.39882 -17.15580 -16.71675 -16.52587 -16.36140 -15.82864 -15.62410 -15.18011 -14.80110 -14.59427 -14.55153 -14.17507 -14.12147 -14.07859 -13.95058 -13.56684 -13.43199 -13.35221 -13.27143 -12.93840 -12.75158 -12.68555 -12.62153 -12.16227 -11.98115 -11.95574 -11.56681 -11.47522 -11.26627 -11.09801 -11.08626 -10.85265 -10.33758 -9.90992 -9.55839 -8.91105 -8.88086 -6.27358 1.05854 1.30759 1.50100 1.52946 1.60945 1.80467 1.88052 2.18363 2.33319 3.03480 3.04882 3.31669 3.42873 3.62459 3.63402 3.71099 3.89616 3.91314 4.00609 4.09601 4.09765 4.14281 4.23653 4.24635 4.40441 4.54793 4.55958 4.60616 4.67496 4.78462 4.88832 4.92343 4.93334 4.94972 5.04569 5.15433 5.16788 5.21536 5.23975 5.30826 5.49511 5.65644 6.15627 6.19373 6.36376 6.87689 7.06622 7.09941 8.52216 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.004366 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.505343 B = 6412.040220 C = 7596.767473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.158 4.158 3 C 0.505 3.495 4 O -0.566 6.566 5 N -0.726 5.726 6 C 0.143 3.857 7 H 0.073 0.927 8 C -0.120 4.120 9 C -0.085 4.085 10 H 0.128 0.872 11 C -0.113 4.113 12 C 0.120 3.880 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.605 5.605 16 C 0.537 3.463 17 O -0.553 6.553 18 C -0.111 4.111 19 S -0.182 6.182 20 C -0.612 4.612 21 H 0.076 0.924 22 C -0.015 4.015 23 N -0.913 5.913 24 Si 1.132 2.868 25 H -0.282 1.282 26 H -0.262 1.262 27 H -0.264 1.264 28 C 0.061 3.939 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.050 0.950 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 21.534 -7.527 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.198 4.198 3 C 0.293 3.707 4 O -0.446 6.446 5 N -0.388 5.388 6 C 0.039 3.961 7 H 0.091 0.909 8 C -0.159 4.159 9 C -0.104 4.104 10 H 0.146 0.854 11 C -0.150 4.150 12 C 0.018 3.982 13 H 0.110 0.890 14 C -0.170 4.170 15 N -0.342 5.342 16 C 0.325 3.675 17 O -0.430 6.430 18 C -0.262 4.262 19 S 0.044 5.956 20 C -0.759 4.759 21 H 0.095 0.905 22 C -0.218 4.218 23 N -0.548 5.548 24 Si 0.950 3.050 25 H -0.208 1.208 26 H -0.187 1.187 27 H -0.188 1.188 28 C -0.061 4.061 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.244 0.756 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.620 20.363 -6.311 22.047 hybrid contribution -0.180 0.846 -0.331 0.926 sum -5.799 21.210 -6.641 22.969 Atomic orbital electron populations 1.21465 0.91855 1.02540 1.02712 1.21855 0.99853 0.93111 1.04967 1.20992 0.82434 0.92075 0.75184 1.90636 1.56179 1.47169 1.50592 1.47550 1.07564 1.10819 1.72818 1.20963 0.94030 0.82125 0.98990 0.90941 1.22047 1.00584 1.00912 0.92309 1.22642 0.96329 0.91138 1.00284 0.85421 1.23133 0.95022 1.01429 0.95460 1.22621 0.96316 0.82035 0.97225 0.88980 1.22345 0.93380 1.03412 0.97866 1.48926 1.28480 1.07629 1.49167 1.19773 0.84053 0.83494 0.80177 1.90728 1.31326 1.85322 1.35670 1.23315 1.02830 0.94692 1.05369 1.85076 1.41362 0.99959 1.69174 1.24006 1.15705 0.95659 1.40577 0.90539 1.27719 0.99642 1.00793 0.93688 1.70929 1.14416 1.37031 1.32470 0.82770 0.73309 0.72195 0.76730 1.20753 1.18652 1.18847 1.23201 0.89864 0.99115 0.93910 0.91986 0.90640 0.92692 0.88360 0.88999 0.75596 0.87426 0.91953 0.89993 0.86244 0.93107 0.85559 0.87481 0.87465 0.92857 0.91338 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.21 71.98 0.66 -2.21 16 2 C -0.16 -3.90 5.98 29.85 0.18 -3.72 16 3 C 0.51 13.45 6.04 87.66 0.53 13.98 16 4 O -0.57 -17.43 14.85 -3.04 -0.05 -17.47 16 5 N -0.73 -17.79 2.78 -443.15 -1.23 -19.02 16 6 C 0.14 2.77 2.71 44.87 0.12 2.89 16 7 H 0.07 1.54 7.99 -2.38 -0.02 1.52 16 8 C -0.12 -1.72 5.15 30.80 0.16 -1.56 16 9 C -0.09 -1.08 4.33 -9.05 -0.04 -1.12 16 10 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 11 C -0.11 -1.26 6.20 32.26 0.20 -1.06 16 12 C 0.12 2.32 3.97 45.87 0.18 2.50 16 13 H 0.09 2.03 8.07 -2.38 -0.02 2.01 16 14 C -0.13 -2.29 5.42 30.89 0.17 -2.13 16 15 N -0.61 -15.12 1.73 -783.75 -1.36 -16.48 16 16 C 0.54 18.98 6.02 87.65 0.53 19.51 16 17 O -0.55 -24.25 16.17 -3.05 -0.05 -24.30 16 18 C -0.11 -4.23 5.33 71.23 0.38 -3.85 16 19 S -0.18 -9.64 19.61 -56.49 -1.11 -10.75 16 20 C -0.61 -33.94 9.50 67.95 0.65 -33.29 16 21 H 0.08 3.95 7.80 -2.91 -0.02 3.93 16 22 C -0.01 -0.84 5.49 84.86 0.47 -0.38 16 23 N -0.91 -56.77 13.67 21.65 0.30 -56.48 16 24 Si 1.13 47.94 29.92 68.60 2.05 49.99 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 28 C 0.06 1.19 5.02 86.85 0.44 1.63 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.29 8.05 -2.38 -0.02 1.27 16 32 H 0.10 2.28 6.42 -2.38 -0.02 2.26 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.40 10.96 3.82 -92.71 -0.35 10.60 16 35 H 0.11 0.96 7.97 -2.38 -0.02 0.94 16 36 H 0.06 1.17 6.89 -2.39 -0.02 1.15 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.67 7.76 -2.39 -0.02 0.66 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.13 1.29 8.02 -2.39 -0.02 1.27 16 41 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.11 3.70 6.20 -2.39 -0.01 3.68 16 43 H 0.26 16.83 7.12 -92.71 -0.66 16.17 16 44 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.09 1.99 3.49 -18.87 -0.07 1.93 16 Total: -1.00 -76.69 355.16 3.88 -72.81 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.70 Total: 30.50 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.62 Total: -8.81 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -2.29 Total: -91.97 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.09 Total: -41.77 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.05 Total: 49.99 kcal Atomic # 16 Polarization: -9.64 SS G_CDS: -1.11 Total: -10.75 kcal Total: -76.69 3.88 -72.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047183639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.234 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds