Wall clock time and date at job start Tue Mar 31 2020 15:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47259 * 2 1 4 4 N 1.46506 * 109.47316 * 240.00100 * 2 1 3 5 5 C 1.34777 * 119.99688 * 84.99780 * 4 2 1 6 6 O 1.21278 * 120.00499 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99745 * 179.97438 * 5 4 2 8 8 S 1.80997 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00111 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00105 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99942 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99816 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46971 * 90.00325 * 13 11 9 15 15 H 1.48501 * 109.47048 * 210.00038 * 13 11 9 16 16 H 1.48496 * 109.47223 * 330.00210 * 13 11 9 17 17 C 1.52996 * 109.47303 * 120.00232 * 2 1 3 18 18 H 1.09000 * 110.88738 * 58.26704 * 17 2 1 19 19 C 1.55159 * 111.00290 * 294.34858 * 17 2 1 20 20 C 1.54322 * 102.94264 * 206.42257 * 19 17 2 21 21 N 1.47018 * 107.27221 * 22.19142 * 20 19 17 22 22 C 1.34781 * 125.65038 * 181.02297 * 21 20 19 23 23 O 1.21280 * 119.99759 * 180.02562 * 22 21 20 24 24 C 1.50699 * 119.99813 * 0.04293 * 22 21 20 25 25 C 1.53002 * 117.49984 * 248.61989 * 24 22 21 26 26 C 1.52998 * 59.99970 * 252.51242 * 25 24 22 27 27 C 1.47423 * 108.70471 * 1.06196 * 21 20 19 28 28 H 1.08996 * 109.47170 * 184.97604 * 1 2 3 29 29 H 1.09001 * 109.47305 * 304.97983 * 1 2 3 30 30 H 1.09005 * 109.47245 * 64.97708 * 1 2 3 31 31 H 0.96992 * 119.99941 * 265.00407 * 4 2 1 32 32 H 1.09007 * 109.46671 * 60.00466 * 7 5 4 33 33 H 1.08996 * 109.47658 * 300.00660 * 7 5 4 34 34 H 0.97006 * 119.99855 * 180.02562 * 12 11 9 35 35 H 1.09004 * 110.72205 * 324.78542 * 19 17 2 36 36 H 1.09001 * 110.71948 * 88.06012 * 19 17 2 37 37 H 1.09008 * 109.88258 * 262.77367 * 20 19 17 38 38 H 1.08996 * 110.01124 * 141.68316 * 20 19 17 39 39 H 1.08999 * 115.54971 * 34.32832 * 24 22 21 40 40 H 1.08995 * 117.49537 * 0.02562 * 25 24 22 41 41 H 1.08996 * 117.49910 * 145.02208 * 25 24 22 42 42 H 1.09008 * 117.49734 * 252.50930 * 26 25 24 43 43 H 1.09001 * 117.50021 * 107.48707 * 26 25 24 44 44 H 1.08998 * 110.36607 * 217.03757 * 27 21 20 45 45 H 1.08998 * 110.37185 * 94.70376 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6500 -0.7284 -3.5875 8 16 2.7114 0.4347 -4.9729 9 6 3.3145 -0.6305 -6.2402 10 1 3.5239 -1.6668 -6.0203 11 6 3.5214 -0.1373 -7.5211 12 7 3.9724 -0.9330 -8.4677 13 14 3.1598 1.6555 -7.9014 14 1 4.3789 2.4683 -7.6598 15 1 2.7508 1.7872 -9.3229 16 1 2.0625 2.1360 -7.0240 17 6 2.0400 -0.7213 1.2492 18 1 1.6646 -1.7438 1.2880 19 6 1.6624 0.0598 2.5355 20 6 2.7599 -0.3660 3.5333 21 7 3.9090 -0.8340 2.7446 22 6 5.0652 -1.3103 3.2475 23 8 5.9496 -1.6693 2.4993 24 6 5.2589 -1.3970 4.7395 25 6 6.2822 -0.4538 5.3751 26 6 6.5933 -1.9464 5.2479 27 6 3.5876 -0.6951 1.3126 28 1 -0.3633 -1.0237 0.0891 29 1 -0.3634 0.5891 0.8420 30 1 -0.3634 0.4347 -0.9312 31 1 2.2490 -1.6317 -1.1527 32 1 1.9777 -1.5507 -3.8326 33 1 3.6493 -1.1203 -3.3979 34 1 4.1173 -0.5883 -9.3628 35 1 1.6982 1.1348 2.3585 36 1 0.6777 -0.2405 2.8940 37 1 2.3919 -1.1730 4.1670 38 1 3.0543 0.4838 4.1490 39 1 4.3648 -1.6328 5.3166 40 1 6.8150 0.2298 4.7142 41 1 6.0614 -0.0687 6.3706 42 1 6.5772 -2.5434 6.1598 43 1 7.3311 -2.2451 4.5032 44 1 4.0045 -1.5289 0.7477 45 1 3.9670 0.2518 0.9286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049698446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:58 Heat of formation + Delta-G solvation = -52.924659 kcal Electronic energy + Delta-G solvation = -24970.421643 eV Core-core repulsion = 21307.621795 eV Total energy + Delta-G solvation = -3662.799849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70776 -39.58545 -38.28074 -36.35667 -35.36252 -32.44632 -32.38301 -30.44964 -29.39286 -28.55569 -25.61068 -25.53270 -23.13831 -22.94503 -22.71733 -20.72307 -20.41305 -19.29024 -18.00775 -17.78373 -16.96105 -16.46058 -15.91440 -15.67007 -15.49619 -15.07475 -14.94402 -14.50518 -14.18522 -13.89652 -13.84818 -13.54067 -13.38412 -13.07176 -12.79052 -12.74685 -12.68973 -12.32908 -12.08692 -11.96807 -11.84394 -11.50243 -11.31853 -11.25257 -11.08054 -11.00116 -10.97265 -10.92436 -10.58022 -10.15282 -9.84704 -9.51533 -9.04984 -9.00960 -8.97627 -8.49222 -6.90522 -6.27523 -3.99165 2.15492 2.53661 2.75580 2.96405 3.27464 3.34539 3.44073 3.51021 3.62789 3.94827 4.04966 4.28446 4.33866 4.34348 4.37081 4.45807 4.64716 4.70799 4.74630 4.87364 4.90804 5.11413 5.12864 5.15927 5.16852 5.20593 5.28519 5.32513 5.36996 5.48995 5.52063 5.52214 5.57486 5.69290 5.71751 5.77952 5.90600 5.93228 6.03275 6.10465 6.54174 7.13684 7.59104 7.84429 7.95579 8.43499 8.48159 9.18574 10.81746 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002389 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.595899 B =11715.246783 C =12753.862982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.734 5.734 5 C 0.534 3.466 6 O -0.519 6.519 7 C -0.125 4.125 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.109 4.109 18 H 0.092 0.908 19 C -0.123 4.123 20 C 0.102 3.898 21 N -0.617 5.617 22 C 0.556 3.444 23 O -0.536 6.536 24 C -0.192 4.192 25 C -0.152 4.152 26 C -0.148 4.148 27 C 0.111 3.889 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.399 0.601 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -1.109 31.727 32.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.393 6.393 7 C -0.276 4.276 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.128 4.128 18 H 0.110 0.890 19 C -0.161 4.161 20 C -0.021 4.021 21 N -0.351 5.351 22 C 0.345 3.655 23 O -0.412 6.412 24 C -0.213 4.213 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.011 4.011 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.233 0.767 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.234 0.615 31.065 31.358 hybrid contribution 0.247 -1.239 -0.320 1.303 sum -3.987 -0.624 30.745 31.008 Atomic orbital electron populations 1.22179 0.94852 1.02068 1.02965 1.20810 0.94259 0.97300 0.82603 0.89068 1.46058 1.69283 1.14058 1.09439 1.20265 0.76768 0.87196 0.83803 1.90694 1.48487 1.15706 1.84434 1.23290 1.04524 1.03482 0.96279 1.84758 1.87174 1.16855 1.02777 1.22318 1.50390 0.98786 0.95364 0.89384 1.24722 0.93388 0.98293 0.94969 1.69939 1.43356 1.35804 1.02585 0.86729 0.81097 0.84867 0.79110 1.19219 1.19962 1.15938 1.22687 0.94764 1.00756 0.94638 0.88984 1.22677 0.98428 1.01244 0.93759 1.22059 0.86079 0.99371 0.94599 1.48389 1.15238 1.63710 1.07811 1.19351 0.80476 0.76452 0.89216 1.90739 1.41290 1.48646 1.60572 1.22158 0.96527 1.09699 0.92926 1.22946 1.00345 0.93771 1.01895 1.22978 0.96434 0.96199 1.02918 1.22291 0.94284 1.02950 0.81588 0.92461 0.91711 0.91473 0.76701 0.88470 0.88478 0.91952 0.89782 0.89323 0.91265 0.91017 0.85967 0.88185 0.87708 0.87817 0.87302 0.90020 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.25 37.16 0.34 -1.10 16 2 C 0.16 1.51 2.08 -67.93 -0.14 1.37 16 3 H 0.09 1.07 7.56 -51.93 -0.39 0.67 16 4 N -0.73 -8.73 4.79 -53.80 -0.26 -8.98 16 5 C 0.53 9.15 7.81 -10.98 -0.09 9.06 16 6 O -0.52 -10.78 15.52 5.56 0.09 -10.69 16 7 C -0.13 -2.41 6.16 36.01 0.22 -2.19 16 8 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 9 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 10 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 11 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 12 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 13 Si 0.86 21.95 27.74 -169.99 -4.71 17.24 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 17 C -0.11 -0.77 2.63 -88.47 -0.23 -1.01 16 18 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 19 C -0.12 -0.61 5.64 -24.90 -0.14 -0.76 16 20 C 0.10 0.55 6.31 -3.07 -0.02 0.53 16 21 N -0.62 -5.61 3.33 -170.52 -0.57 -6.18 16 22 C 0.56 6.14 7.63 -10.98 -0.08 6.06 16 23 O -0.54 -8.25 16.51 5.56 0.09 -8.16 16 24 C -0.19 -1.42 5.54 -91.77 -0.51 -1.92 16 25 C -0.15 -0.95 10.23 -26.73 -0.27 -1.22 16 26 C -0.15 -1.03 10.04 -26.73 -0.27 -1.30 16 27 C 0.11 1.08 6.10 -2.53 -0.02 1.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 32 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 33 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 34 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.08 0.43 8.02 -51.93 -0.42 0.02 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.28 7.98 -51.92 -0.41 -0.14 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.12 0.62 7.67 -51.93 -0.40 0.22 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.50 8.14 -51.92 -0.42 0.07 16 43 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 44 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 45 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -36.62 385.31 -9.17 -45.79 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.41 Total: 0.33 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.99 Total: -3.53 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.05 Total: -41.18 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.62 -9.17 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049698446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.136 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds