Wall clock time and date at job start Tue Mar 31 2020 15:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47259 * 2 1 4 4 N 1.46506 * 109.47316 * 240.00100 * 2 1 3 5 5 C 1.34777 * 119.99688 * 84.99780 * 4 2 1 6 6 O 1.21278 * 120.00499 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99745 * 179.97438 * 5 4 2 8 8 S 1.80997 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00111 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00105 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99942 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99816 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46971 * 90.00325 * 13 11 9 15 15 H 1.48501 * 109.47048 * 210.00038 * 13 11 9 16 16 H 1.48496 * 109.47223 * 330.00210 * 13 11 9 17 17 C 1.52996 * 109.47303 * 120.00232 * 2 1 3 18 18 H 1.09000 * 110.88738 * 58.26704 * 17 2 1 19 19 C 1.55159 * 111.00290 * 294.34858 * 17 2 1 20 20 C 1.54322 * 102.94264 * 206.42257 * 19 17 2 21 21 N 1.47018 * 107.27221 * 22.19142 * 20 19 17 22 22 C 1.34781 * 125.65038 * 181.02297 * 21 20 19 23 23 O 1.21280 * 119.99759 * 180.02562 * 22 21 20 24 24 C 1.50699 * 119.99813 * 0.04293 * 22 21 20 25 25 C 1.53002 * 117.49984 * 248.61989 * 24 22 21 26 26 C 1.52998 * 59.99970 * 252.51242 * 25 24 22 27 27 C 1.47423 * 108.70471 * 1.06196 * 21 20 19 28 28 H 1.08996 * 109.47170 * 184.97604 * 1 2 3 29 29 H 1.09001 * 109.47305 * 304.97983 * 1 2 3 30 30 H 1.09005 * 109.47245 * 64.97708 * 1 2 3 31 31 H 0.96992 * 119.99941 * 265.00407 * 4 2 1 32 32 H 1.09007 * 109.46671 * 60.00466 * 7 5 4 33 33 H 1.08996 * 109.47658 * 300.00660 * 7 5 4 34 34 H 0.97006 * 119.99855 * 180.02562 * 12 11 9 35 35 H 1.09004 * 110.72205 * 324.78542 * 19 17 2 36 36 H 1.09001 * 110.71948 * 88.06012 * 19 17 2 37 37 H 1.09008 * 109.88258 * 262.77367 * 20 19 17 38 38 H 1.08996 * 110.01124 * 141.68316 * 20 19 17 39 39 H 1.08999 * 115.54971 * 34.32832 * 24 22 21 40 40 H 1.08995 * 117.49537 * 0.02562 * 25 24 22 41 41 H 1.08996 * 117.49910 * 145.02208 * 25 24 22 42 42 H 1.09008 * 117.49734 * 252.50930 * 26 25 24 43 43 H 1.09001 * 117.50021 * 107.48707 * 26 25 24 44 44 H 1.08998 * 110.36607 * 217.03757 * 27 21 20 45 45 H 1.08998 * 110.37185 * 94.70376 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1586 -2.4115 7 6 2.6500 -0.7284 -3.5875 8 16 2.7114 0.4347 -4.9729 9 6 3.3145 -0.6305 -6.2402 10 1 3.5239 -1.6668 -6.0203 11 6 3.5214 -0.1373 -7.5211 12 7 3.9724 -0.9330 -8.4677 13 14 3.1598 1.6555 -7.9014 14 1 4.3789 2.4683 -7.6598 15 1 2.7508 1.7872 -9.3229 16 1 2.0625 2.1360 -7.0240 17 6 2.0400 -0.7213 1.2492 18 1 1.6646 -1.7438 1.2880 19 6 1.6624 0.0598 2.5355 20 6 2.7599 -0.3660 3.5333 21 7 3.9090 -0.8340 2.7446 22 6 5.0652 -1.3103 3.2475 23 8 5.9496 -1.6693 2.4993 24 6 5.2589 -1.3970 4.7395 25 6 6.2822 -0.4538 5.3751 26 6 6.5933 -1.9464 5.2479 27 6 3.5876 -0.6951 1.3126 28 1 -0.3633 -1.0237 0.0891 29 1 -0.3634 0.5891 0.8420 30 1 -0.3634 0.4347 -0.9312 31 1 2.2490 -1.6317 -1.1527 32 1 1.9777 -1.5507 -3.8326 33 1 3.6493 -1.1203 -3.3979 34 1 4.1173 -0.5883 -9.3628 35 1 1.6982 1.1348 2.3585 36 1 0.6777 -0.2405 2.8940 37 1 2.3919 -1.1730 4.1670 38 1 3.0543 0.4838 4.1490 39 1 4.3648 -1.6328 5.3166 40 1 6.8150 0.2298 4.7142 41 1 6.0614 -0.0687 6.3706 42 1 6.5772 -2.5434 6.1598 43 1 7.3311 -2.2451 4.5032 44 1 4.0045 -1.5289 0.7477 45 1 3.9670 0.2518 0.9286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049698446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:57 Heat of formation + Delta-G solvation = -78.554073 kcal Electronic energy + Delta-G solvation = -24971.533018 eV Core-core repulsion = 21307.621795 eV Total energy + Delta-G solvation = -3663.911223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48499 -40.73875 -39.13043 -37.03016 -36.37307 -34.69322 -33.42607 -31.42448 -30.04169 -29.78396 -27.86950 -26.22789 -23.93208 -23.47905 -23.27418 -21.66770 -21.46226 -20.05421 -19.78049 -18.60373 -17.89367 -17.84474 -17.13218 -16.79251 -16.51798 -16.42158 -16.14876 -15.72309 -15.17593 -15.01778 -14.88066 -14.69544 -14.42646 -14.22898 -14.09683 -13.50190 -13.43675 -13.36116 -13.31278 -13.03192 -12.93267 -12.72621 -12.52559 -12.46862 -12.15357 -11.94797 -11.87071 -11.64410 -11.54230 -11.46968 -11.19083 -11.00625 -10.95244 -10.56390 -10.15221 -9.74086 -9.01415 -8.53339 -6.24253 0.97252 1.30034 1.38709 1.44955 1.54407 1.56363 1.86176 2.20115 2.24714 2.69469 2.84703 2.88658 3.32251 3.46356 3.64110 3.75891 3.82812 3.87536 3.95078 4.15800 4.18248 4.23483 4.28933 4.32706 4.38947 4.44694 4.49668 4.65389 4.71136 4.78806 4.80768 4.86332 4.90356 4.98130 5.03454 5.09166 5.18816 5.22342 5.31255 5.37346 5.51638 5.68794 6.09458 6.43448 6.45008 6.91490 7.05702 7.18839 8.59224 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002389 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.595899 B =11715.246783 C =12753.862982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.071 0.929 4 N -0.712 5.712 5 C 0.538 3.462 6 O -0.559 6.559 7 C -0.114 4.114 8 S -0.173 6.173 9 C -0.530 4.530 10 H 0.060 0.940 11 C 0.044 3.956 12 N -0.917 5.917 13 Si 0.916 3.084 14 H -0.263 1.263 15 H -0.258 1.258 16 H -0.235 1.235 17 C -0.092 4.092 18 H 0.111 0.889 19 C -0.116 4.116 20 C 0.096 3.904 21 N -0.616 5.616 22 C 0.543 3.457 23 O -0.596 6.596 24 C -0.192 4.192 25 C -0.141 4.141 26 C -0.156 4.156 27 C 0.105 3.895 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.413 0.587 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.277 0.723 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.156 0.844 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 -0.803 35.281 35.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.089 0.911 4 N -0.366 5.366 5 C 0.324 3.676 6 O -0.437 6.437 7 C -0.265 4.265 8 S 0.054 5.946 9 C -0.678 4.678 10 H 0.078 0.922 11 C -0.162 4.162 12 N -0.555 5.555 13 Si 0.738 3.262 14 H -0.188 1.188 15 H -0.182 1.182 16 H -0.159 1.159 17 C -0.112 4.112 18 H 0.130 0.870 19 C -0.154 4.154 20 C -0.025 4.025 21 N -0.348 5.348 22 C 0.333 3.667 23 O -0.477 6.477 24 C -0.212 4.212 25 C -0.179 4.179 26 C -0.193 4.193 27 C -0.018 4.018 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.250 0.750 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.174 0.826 40 H 0.099 0.901 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.381 0.895 34.672 35.265 hybrid contribution 0.928 -1.430 -1.308 2.149 sum -5.453 -0.536 33.363 33.810 Atomic orbital electron populations 1.22127 0.93374 1.03470 1.02426 1.21000 0.95258 0.96406 0.82350 0.91124 1.45901 1.67437 1.14617 1.08598 1.19846 0.76745 0.86573 0.84457 1.90681 1.50696 1.17223 1.85092 1.23297 1.05872 1.02426 0.94930 1.84636 1.86924 1.18650 1.04393 1.22468 1.50282 0.98213 0.96838 0.92165 1.25606 0.93224 1.02450 0.94899 1.70020 1.44432 1.37795 1.03266 0.85840 0.80985 0.79740 0.79622 1.18815 1.18174 1.15913 1.22576 0.92337 1.01895 0.94385 0.87050 1.22747 0.99799 1.00889 0.91948 1.22373 0.84639 1.00845 0.94633 1.48528 1.15792 1.62623 1.07887 1.20133 0.80157 0.75658 0.90710 1.90704 1.43358 1.51427 1.62255 1.22244 0.97956 1.10501 0.90518 1.23031 0.99105 0.92944 1.02793 1.23029 0.95708 0.97370 1.03216 1.22235 0.96317 1.00895 0.82318 0.90620 0.88986 0.94716 0.75038 0.86843 0.87504 0.91341 0.89895 0.86181 0.88608 0.89599 0.82644 0.90132 0.84481 0.85092 0.90270 0.92101 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.25 71.98 0.67 -1.69 16 2 C 0.15 2.74 2.08 44.99 0.09 2.83 16 3 H 0.07 1.61 7.56 -2.39 -0.02 1.59 16 4 N -0.71 -16.20 4.79 -442.53 -2.12 -18.32 16 5 C 0.54 18.35 7.81 87.66 0.68 19.04 16 6 O -0.56 -23.42 15.52 -3.02 -0.05 -23.47 16 7 C -0.11 -4.41 6.16 71.24 0.44 -3.97 16 8 S -0.17 -8.87 18.55 -56.49 -1.05 -9.92 16 9 C -0.53 -31.54 10.04 67.96 0.68 -30.86 16 10 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 11 C 0.04 2.60 5.50 84.86 0.47 3.07 16 12 N -0.92 -56.82 13.97 21.65 0.30 -56.52 16 13 Si 0.92 45.73 27.74 68.60 1.90 47.63 16 14 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 17 C -0.09 -1.07 2.63 -9.40 -0.02 -1.10 16 18 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 19 C -0.12 -0.69 5.64 31.78 0.18 -0.51 16 20 C 0.10 0.68 6.31 86.73 0.55 1.22 16 21 N -0.62 -10.36 3.33 -811.80 -2.70 -13.06 16 22 C 0.54 11.85 7.63 87.66 0.67 12.52 16 23 O -0.60 -19.45 16.51 -3.03 -0.05 -19.50 16 24 C -0.19 -2.43 5.54 -11.54 -0.06 -2.49 16 25 C -0.14 -1.50 10.23 30.59 0.31 -1.19 16 26 C -0.16 -2.00 10.04 30.59 0.31 -1.69 16 27 C 0.11 2.01 6.10 86.86 0.53 2.54 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.91 7.65 -2.39 -0.02 0.89 16 30 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.41 7.23 8.60 -92.71 -0.80 6.43 16 32 H 0.11 4.00 8.14 -2.39 -0.02 3.99 16 33 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 34 H 0.28 15.84 8.31 -92.70 -0.77 15.07 16 35 H 0.08 0.57 8.02 -2.39 -0.02 0.55 16 36 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.10 0.25 7.98 -2.38 -0.02 0.23 16 38 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.16 0.90 7.67 -2.39 -0.02 0.88 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.08 1.50 7.67 -2.39 -0.02 1.48 16 44 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 45 H 0.05 1.18 8.04 -2.39 -0.02 1.16 16 Total: -1.00 -84.79 385.31 1.88 -82.91 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.15 Total: 12.51 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.49 Total: -2.27 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -4.52 Total: -87.90 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.10 Total: -42.97 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.92 kcal Total: -84.79 1.88 -82.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049698446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.359 kcal (2) G-P(sol) polarization free energy of solvation -84.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds