Wall clock time and date at job start Tue Mar 31 2020 15:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 N 1.46502 * 109.47286 * 119.99865 * 2 1 3 5 5 C 1.34772 * 120.00426 * 275.00015 * 4 2 1 6 6 O 1.21288 * 119.99632 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00428 * 179.97438 * 5 4 2 8 8 S 1.80995 * 109.47383 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00202 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.38794 * 120.00045 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00202 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99849 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47300 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47286 * 119.99965 * 13 11 9 16 16 H 1.48503 * 109.47129 * 239.99991 * 13 11 9 17 17 C 1.53004 * 109.47298 * 240.00364 * 2 1 3 18 18 H 1.09001 * 110.88233 * 299.18793 * 17 2 1 19 19 C 1.55157 * 111.00467 * 63.06582 * 17 2 1 20 20 C 1.54319 * 102.93999 * 153.57747 * 19 17 2 21 21 N 1.47025 * 107.27389 * 337.81002 * 20 19 17 22 22 C 1.34779 * 125.64896 * 178.67512 * 21 20 19 23 23 O 1.21284 * 120.00004 * 180.02562 * 22 21 20 24 24 C 1.50696 * 120.00044 * 0.02562 * 22 21 20 25 25 C 1.53007 * 117.49924 * 248.62564 * 24 22 21 26 26 C 1.52996 * 117.50022 * 180.02562 * 24 22 21 27 27 C 1.47427 * 108.70360 * 358.93797 * 21 20 19 28 28 H 1.09001 * 109.47181 * 54.78045 * 1 2 3 29 29 H 1.08999 * 109.47030 * 174.78132 * 1 2 3 30 30 H 1.09003 * 109.47037 * 294.77914 * 1 2 3 31 31 H 0.97004 * 119.99508 * 95.00171 * 4 2 1 32 32 H 1.08998 * 109.46925 * 300.00558 * 7 5 4 33 33 H 1.08995 * 109.47135 * 59.99855 * 7 5 4 34 34 H 0.96998 * 120.00032 * 180.02562 * 12 11 9 35 35 H 1.09000 * 110.71675 * 35.22016 * 19 17 2 36 36 H 1.08995 * 110.87352 * 272.01139 * 19 17 2 37 37 H 1.09002 * 109.88689 * 218.39374 * 20 19 17 38 38 H 1.09004 * 109.88237 * 97.22331 * 20 19 17 39 39 H 1.09001 * 115.55062 * 34.32947 * 24 22 21 40 40 H 1.08999 * 117.49735 * 359.97438 * 25 24 22 41 41 H 1.08998 * 117.50098 * 145.01892 * 25 24 22 42 42 H 1.08996 * 117.50004 * 214.98038 * 26 24 22 43 43 H 1.09007 * 117.49890 * 359.97438 * 26 24 22 44 44 H 1.09000 * 110.36538 * 142.96637 * 27 21 20 45 45 H 1.08992 * 110.36946 * 265.29452 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6489 -0.7288 3.5877 8 16 2.7092 0.4340 4.9734 9 6 3.3126 -0.6311 6.2407 10 1 3.5219 -1.6676 6.0206 11 6 3.5178 -0.1385 7.5219 12 7 3.2622 1.1246 7.7902 13 14 4.1568 -1.2679 8.8656 14 1 4.3630 -2.6300 8.3109 15 1 5.4463 -0.7429 9.3820 16 1 3.1685 -1.3291 9.9723 17 6 2.0400 -0.7212 -1.2493 18 1 1.7013 -1.7571 -1.2654 19 6 1.6068 0.0257 -2.5384 20 6 2.6982 -0.3749 -3.5532 21 7 3.8802 -0.7883 -2.7827 22 6 5.0404 -1.2350 -3.3032 23 8 5.9529 -1.5502 -2.5691 24 6 5.2038 -1.3428 -4.7974 25 6 5.3019 -2.7467 -5.3979 26 6 6.5442 -1.8572 -5.3262 27 6 3.5839 -0.6394 -1.3462 28 1 -0.3633 0.5927 -0.8396 29 1 -0.3633 -1.0234 -0.0935 30 1 -0.3633 0.4307 0.9331 31 1 2.2490 -1.6318 1.1526 32 1 1.9760 -1.5506 3.8325 33 1 3.6479 -1.1214 3.3986 34 1 3.4060 1.4690 8.6855 35 1 1.6067 1.1038 -2.3778 36 1 0.6263 -0.3132 -2.8727 37 1 2.9474 0.4773 -4.1855 38 1 2.3472 -1.2045 -4.1670 39 1 4.6912 -0.5794 -5.3827 40 1 5.2487 -3.5922 -4.7121 41 1 4.8537 -2.9072 -6.3784 42 1 6.9136 -1.4323 -6.2594 43 1 7.3080 -2.1173 -4.5932 44 1 4.0431 -1.4485 -0.7783 45 1 3.9360 0.3266 -0.9844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049698452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:04 Heat of formation + Delta-G solvation = -53.254021 kcal Electronic energy + Delta-G solvation = -24915.450555 eV Core-core repulsion = 21252.636424 eV Total energy + Delta-G solvation = -3662.814131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67392 -39.49575 -38.22199 -36.34254 -35.28506 -32.42029 -32.32490 -30.36206 -29.36013 -28.42807 -25.52589 -25.45180 -23.08806 -22.93215 -22.69006 -20.66359 -20.29781 -19.27507 -17.98235 -17.69498 -16.96690 -16.31249 -15.99936 -15.76074 -15.06323 -14.97640 -14.79040 -14.71060 -14.09104 -13.94530 -13.84574 -13.44750 -13.27190 -12.99331 -12.76263 -12.67553 -12.56119 -12.26638 -11.97565 -11.95800 -11.75326 -11.43161 -11.28607 -11.05766 -11.03209 -11.00800 -10.97552 -10.88093 -10.73274 -10.13399 -9.79008 -9.38315 -9.06584 -8.98587 -8.92571 -8.21966 -6.48382 -6.20515 -3.90708 2.17122 2.56346 3.01570 3.09599 3.22916 3.29081 3.33709 3.44949 3.66809 3.98779 4.08768 4.21783 4.30903 4.35224 4.42125 4.46611 4.66328 4.76255 4.91315 4.93154 5.14760 5.15359 5.16127 5.17083 5.23084 5.26809 5.32148 5.41119 5.50227 5.53904 5.55549 5.59974 5.67067 5.71206 5.75023 5.90708 5.94872 5.99808 6.15467 6.17609 6.64027 7.16298 7.61480 7.69999 7.86472 8.36987 8.61460 9.25157 10.86978 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.002328 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.049736 B =12025.714720 C =13274.140015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.091 0.909 4 N -0.736 5.736 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.108 4.108 18 H 0.091 0.909 19 C -0.123 4.123 20 C 0.102 3.898 21 N -0.617 5.617 22 C 0.556 3.444 23 O -0.537 6.537 24 C -0.192 4.192 25 C -0.152 4.152 26 C -0.148 4.148 27 C 0.111 3.889 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.268 0.732 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 -6.715 -29.725 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.390 5.390 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.682 4.682 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.128 4.128 18 H 0.109 0.891 19 C -0.161 4.161 20 C -0.021 4.021 21 N -0.351 5.351 22 C 0.345 3.655 23 O -0.413 6.413 24 C -0.213 4.213 25 C -0.189 4.189 26 C -0.185 4.185 27 C -0.011 4.011 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.044 -4.783 -29.131 29.678 hybrid contribution 0.704 -2.437 0.755 2.646 sum -2.340 -7.219 -28.376 29.373 Atomic orbital electron populations 1.22179 0.94929 1.01961 1.02984 1.20793 0.94217 0.97339 0.82664 0.89084 1.46095 1.69495 1.13949 1.09506 1.20293 0.76700 0.87202 0.83721 1.90700 1.48262 1.15727 1.84394 1.23537 1.03718 1.04855 0.98373 1.85373 1.86269 1.12984 0.98776 1.22908 1.50827 0.98179 0.96314 0.90888 1.24995 0.95118 0.95551 0.97980 1.70027 1.45658 1.13217 1.21414 0.86116 0.78520 0.80155 0.80700 1.19618 1.20558 1.20584 1.22676 0.94611 1.00825 0.94641 0.89073 1.22674 0.98315 1.01542 0.93601 1.22066 0.85381 0.99839 0.94839 1.48395 1.13567 1.65293 1.07865 1.19344 0.80714 0.76335 0.89103 1.90737 1.39580 1.49426 1.61581 1.22163 1.05402 1.00773 0.92948 1.22933 1.01905 0.91938 1.02169 1.22970 0.90882 1.01890 1.02803 1.22299 0.94584 1.02898 0.81324 0.91756 0.92552 0.91432 0.76892 0.89252 0.89214 0.92256 0.89790 0.89332 0.91181 0.91099 0.85948 0.88238 0.87731 0.87820 0.87310 0.90072 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.21 37.15 0.34 -1.20 16 2 C 0.16 1.61 2.08 -67.93 -0.14 1.47 16 3 H 0.09 1.14 7.56 -51.93 -0.39 0.74 16 4 N -0.74 -9.29 4.86 -53.81 -0.26 -9.55 16 5 C 0.53 9.71 7.81 -10.99 -0.09 9.62 16 6 O -0.52 -11.39 15.53 5.55 0.09 -11.30 16 7 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 10 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 13 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.11 -0.82 2.64 -88.47 -0.23 -1.05 16 18 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 19 C -0.12 -0.66 5.52 -24.90 -0.14 -0.80 16 20 C 0.10 0.58 6.28 -3.07 -0.02 0.56 16 21 N -0.62 -5.78 3.33 -170.52 -0.57 -6.35 16 22 C 0.56 6.25 7.63 -10.99 -0.08 6.17 16 23 O -0.54 -8.35 16.51 5.55 0.09 -8.26 16 24 C -0.19 -1.44 5.54 -91.77 -0.51 -1.95 16 25 C -0.15 -0.93 10.23 -26.75 -0.27 -1.20 16 26 C -0.15 -1.05 10.04 -26.76 -0.27 -1.31 16 27 C 0.11 1.13 6.17 -2.53 -0.02 1.11 16 28 H 0.06 0.48 7.58 -51.93 -0.39 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.12 0.66 7.74 -51.93 -0.40 0.25 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.97 7.67 -51.92 -0.40 0.58 16 44 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 45 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -36.94 388.05 -9.69 -46.63 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.38 Total: 0.36 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.01 Total: -4.53 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.09 Total: -41.51 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.94 -9.69 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049698452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.621 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds