Wall clock time and date at job start Tue Mar 31 2020 15:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47400 * 2 1 4 4 N 1.46502 * 109.47286 * 119.99865 * 2 1 3 5 5 C 1.34772 * 120.00426 * 275.00015 * 4 2 1 6 6 O 1.21288 * 119.99632 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00428 * 179.97438 * 5 4 2 8 8 S 1.80995 * 109.47383 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00202 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.38794 * 120.00045 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00202 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99849 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47300 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47286 * 119.99965 * 13 11 9 16 16 H 1.48503 * 109.47129 * 239.99991 * 13 11 9 17 17 C 1.53004 * 109.47298 * 240.00364 * 2 1 3 18 18 H 1.09001 * 110.88233 * 299.18793 * 17 2 1 19 19 C 1.55157 * 111.00467 * 63.06582 * 17 2 1 20 20 C 1.54319 * 102.93999 * 153.57747 * 19 17 2 21 21 N 1.47025 * 107.27389 * 337.81002 * 20 19 17 22 22 C 1.34779 * 125.64896 * 178.67512 * 21 20 19 23 23 O 1.21284 * 120.00004 * 180.02562 * 22 21 20 24 24 C 1.50696 * 120.00044 * 0.02562 * 22 21 20 25 25 C 1.53007 * 117.49924 * 248.62564 * 24 22 21 26 26 C 1.52996 * 117.50022 * 180.02562 * 24 22 21 27 27 C 1.47427 * 108.70360 * 358.93797 * 21 20 19 28 28 H 1.09001 * 109.47181 * 54.78045 * 1 2 3 29 29 H 1.08999 * 109.47030 * 174.78132 * 1 2 3 30 30 H 1.09003 * 109.47037 * 294.77914 * 1 2 3 31 31 H 0.97004 * 119.99508 * 95.00171 * 4 2 1 32 32 H 1.08998 * 109.46925 * 300.00558 * 7 5 4 33 33 H 1.08995 * 109.47135 * 59.99855 * 7 5 4 34 34 H 0.96998 * 120.00032 * 180.02562 * 12 11 9 35 35 H 1.09000 * 110.71675 * 35.22016 * 19 17 2 36 36 H 1.08995 * 110.87352 * 272.01139 * 19 17 2 37 37 H 1.09002 * 109.88689 * 218.39374 * 20 19 17 38 38 H 1.09004 * 109.88237 * 97.22331 * 20 19 17 39 39 H 1.09001 * 115.55062 * 34.32947 * 24 22 21 40 40 H 1.08999 * 117.49735 * 359.97438 * 25 24 22 41 41 H 1.08998 * 117.50098 * 145.01892 * 25 24 22 42 42 H 1.08996 * 117.50004 * 214.98038 * 26 24 22 43 43 H 1.09007 * 117.49890 * 359.97438 * 26 24 22 44 44 H 1.09000 * 110.36538 * 142.96637 * 27 21 20 45 45 H 1.08992 * 110.36946 * 265.29452 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6489 -0.7288 3.5877 8 16 2.7092 0.4340 4.9734 9 6 3.3126 -0.6311 6.2407 10 1 3.5219 -1.6676 6.0206 11 6 3.5178 -0.1385 7.5219 12 7 3.2622 1.1246 7.7902 13 14 4.1568 -1.2679 8.8656 14 1 4.3630 -2.6300 8.3109 15 1 5.4463 -0.7429 9.3820 16 1 3.1685 -1.3291 9.9723 17 6 2.0400 -0.7212 -1.2493 18 1 1.7013 -1.7571 -1.2654 19 6 1.6068 0.0257 -2.5384 20 6 2.6982 -0.3749 -3.5532 21 7 3.8802 -0.7883 -2.7827 22 6 5.0404 -1.2350 -3.3032 23 8 5.9529 -1.5502 -2.5691 24 6 5.2038 -1.3428 -4.7974 25 6 5.3019 -2.7467 -5.3979 26 6 6.5442 -1.8572 -5.3262 27 6 3.5839 -0.6394 -1.3462 28 1 -0.3633 0.5927 -0.8396 29 1 -0.3633 -1.0234 -0.0935 30 1 -0.3633 0.4307 0.9331 31 1 2.2490 -1.6318 1.1526 32 1 1.9760 -1.5506 3.8325 33 1 3.6479 -1.1214 3.3986 34 1 3.4060 1.4690 8.6855 35 1 1.6067 1.1038 -2.3778 36 1 0.6263 -0.3132 -2.8727 37 1 2.9474 0.4773 -4.1855 38 1 2.3472 -1.2045 -4.1670 39 1 4.6912 -0.5794 -5.3827 40 1 5.2487 -3.5922 -4.7121 41 1 4.8537 -2.9072 -6.3784 42 1 6.9136 -1.4323 -6.2594 43 1 7.3080 -2.1173 -4.5932 44 1 4.0431 -1.4485 -0.7783 45 1 3.9360 0.3266 -0.9844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049698452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:03 Heat of formation + Delta-G solvation = -79.067564 kcal Electronic energy + Delta-G solvation = -24916.569914 eV Core-core repulsion = 21252.636424 eV Total energy + Delta-G solvation = -3663.933490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47457 -40.70506 -39.11963 -37.02416 -36.35527 -34.60508 -33.40737 -31.38095 -30.04846 -29.73765 -27.67859 -26.21423 -23.92500 -23.46831 -23.26469 -21.64007 -21.43842 -20.02907 -19.76369 -18.55855 -17.89193 -17.75815 -16.90361 -16.79791 -16.72463 -16.41042 -15.92234 -15.62289 -15.46611 -14.86629 -14.67622 -14.50554 -14.46774 -14.20718 -14.03742 -13.49306 -13.39505 -13.30092 -13.17912 -12.93259 -12.89248 -12.67757 -12.53987 -12.45270 -12.14373 -11.96593 -11.73190 -11.62352 -11.54594 -11.45806 -11.17630 -10.99588 -10.90407 -10.29708 -10.12636 -9.74000 -8.68208 -8.36784 -6.14544 1.25530 1.39146 1.39573 1.45296 1.56830 1.61701 1.86470 2.23706 2.28102 2.89205 2.97264 3.27557 3.35175 3.46783 3.64437 3.76534 3.83726 3.96260 3.97336 4.16379 4.21222 4.27247 4.30393 4.34159 4.39201 4.48766 4.49549 4.65182 4.72188 4.79538 4.80703 4.85860 4.90150 4.99033 5.03609 5.10453 5.19583 5.21358 5.31826 5.37303 5.40127 5.54236 6.18125 6.43977 6.49419 7.04658 7.05900 7.24785 8.72711 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.002328 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.049736 B =12025.714720 C =13274.140015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.067 0.933 4 N -0.713 5.713 5 C 0.537 3.463 6 O -0.562 6.562 7 C -0.132 4.132 8 S -0.149 6.149 9 C -0.546 4.546 10 H 0.081 0.919 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.272 1.272 17 C -0.091 4.091 18 H 0.112 0.888 19 C -0.116 4.116 20 C 0.097 3.903 21 N -0.616 5.616 22 C 0.543 3.457 23 O -0.596 6.596 24 C -0.194 4.194 25 C -0.135 4.135 26 C -0.159 4.159 27 C 0.106 3.894 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.413 0.587 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.271 0.729 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 -8.845 -32.582 34.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.085 0.915 4 N -0.366 5.366 5 C 0.322 3.678 6 O -0.440 6.440 7 C -0.283 4.283 8 S 0.078 5.922 9 C -0.694 4.694 10 H 0.099 0.901 11 C -0.192 4.192 12 N -0.547 5.547 13 Si 0.821 3.179 14 H -0.182 1.182 15 H -0.199 1.199 16 H -0.197 1.197 17 C -0.111 4.111 18 H 0.130 0.870 19 C -0.155 4.155 20 C -0.024 4.024 21 N -0.348 5.348 22 C 0.334 3.666 23 O -0.478 6.478 24 C -0.215 4.215 25 C -0.172 4.172 26 C -0.196 4.196 27 C -0.017 4.017 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.249 0.751 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.170 0.830 40 H 0.103 0.897 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.396 -6.941 -32.054 33.090 hybrid contribution 1.103 -1.776 1.523 2.587 sum -3.292 -8.717 -30.531 31.921 Atomic orbital electron populations 1.22125 0.93435 1.03510 1.02293 1.20979 0.95242 0.96331 0.82544 0.91506 1.45899 1.67605 1.14531 1.08569 1.19963 0.76640 0.86566 0.84587 1.90686 1.50631 1.17557 1.85154 1.23390 1.05256 1.03318 0.96349 1.85518 1.86635 1.17352 1.02692 1.23228 1.50900 0.98414 0.96848 0.90107 1.26135 0.95083 0.97254 1.00759 1.70185 1.46849 1.15433 1.22243 0.84902 0.77878 0.78145 0.76992 1.18185 1.19944 1.19702 1.22557 0.92278 1.01956 0.94260 0.86985 1.22747 0.99714 1.01240 0.91751 1.22374 0.83759 1.01456 0.94853 1.48530 1.14258 1.64210 1.07810 1.20131 0.80350 0.75491 0.90636 1.90702 1.41641 1.52183 1.63237 1.22232 1.06109 1.02689 0.90451 1.23030 1.00643 0.90475 1.03038 1.23024 0.90553 1.02960 1.03096 1.22228 0.96530 1.00786 0.82181 0.89008 0.90444 0.94962 0.75059 0.87230 0.87853 0.91962 0.89991 0.86151 0.89553 0.88558 0.82990 0.89676 0.84441 0.85316 0.90249 0.92109 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.21 71.98 0.66 -1.96 16 2 C 0.15 3.01 2.08 44.99 0.09 3.11 16 3 H 0.07 1.69 7.56 -2.39 -0.02 1.67 16 4 N -0.71 -17.53 4.86 -442.54 -2.15 -19.68 16 5 C 0.54 19.84 7.81 87.66 0.68 20.53 16 6 O -0.56 -25.88 15.53 -3.05 -0.05 -25.92 16 7 C -0.13 -5.37 6.16 71.23 0.44 -4.93 16 8 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 9 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 11 C 0.01 0.72 5.49 84.86 0.47 1.18 16 12 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 13 Si 1.00 44.55 29.55 68.60 2.03 46.58 16 14 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 C -0.09 -1.16 2.64 -9.40 -0.02 -1.19 16 18 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 19 C -0.12 -0.81 5.52 31.78 0.18 -0.64 16 20 C 0.10 0.75 6.28 86.73 0.54 1.29 16 21 N -0.62 -10.77 3.33 -811.79 -2.70 -13.47 16 22 C 0.54 12.09 7.63 87.66 0.67 12.76 16 23 O -0.60 -19.64 16.51 -3.04 -0.05 -19.69 16 24 C -0.19 -2.53 5.54 -11.54 -0.06 -2.59 16 25 C -0.13 -1.31 10.23 30.58 0.31 -1.00 16 26 C -0.16 -2.07 10.04 30.58 0.31 -1.76 16 27 C 0.11 2.13 6.17 86.86 0.54 2.67 16 28 H 0.09 1.06 7.58 -2.39 -0.02 1.04 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.41 7.71 8.60 -92.70 -0.80 6.92 16 32 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 33 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 35 H 0.08 0.66 8.04 -2.39 -0.02 0.64 16 36 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.09 0.45 8.07 -2.39 -0.02 0.43 16 38 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.15 1.04 7.74 -2.39 -0.02 1.02 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.52 7.67 -2.38 -0.02 1.50 16 44 H 0.06 1.45 8.03 -2.39 -0.02 1.43 16 45 H 0.05 1.22 8.02 -2.39 -0.02 1.20 16 Total: -1.00 -87.34 388.05 1.84 -85.50 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.19 Total: 16.50 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 5.45 Total: -3.75 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.56 Total: -89.61 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.10 Total: -45.61 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -87.34 1.84 -85.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049698452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.435 kcal (2) G-P(sol) polarization free energy of solvation -87.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds