Wall clock time and date at job start Tue Mar 31 2020 15:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 5 5 C 1.34769 * 119.99798 * 274.99913 * 4 2 1 6 6 O 1.21280 * 120.00742 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99510 * 179.97438 * 5 4 2 8 8 S 1.81001 * 109.47085 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00203 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99767 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99785 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00555 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99657 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47264 * 90.00027 * 13 11 9 15 15 H 1.48496 * 109.47129 * 210.00206 * 13 11 9 16 16 H 1.48504 * 109.47284 * 330.00381 * 13 11 9 17 17 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 18 18 H 1.08999 * 110.88440 * 299.29241 * 17 2 1 19 19 C 1.55159 * 111.00252 * 175.41711 * 17 2 1 20 20 C 1.54321 * 102.94408 * 206.42386 * 19 17 2 21 21 N 1.47025 * 107.26962 * 22.19062 * 20 19 17 22 22 C 1.34777 * 125.64643 * 181.10060 * 21 20 19 23 23 O 1.21283 * 119.99603 * 179.97438 * 22 21 20 24 24 C 1.50702 * 120.00020 * 359.97438 * 22 21 20 25 25 C 1.52997 * 117.49656 * 248.62322 * 24 22 21 26 26 C 1.53001 * 117.49611 * 180.02562 * 24 22 21 27 27 C 1.47472 * 108.72095 * 1.02652 * 21 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.97005 * 119.99239 * 94.99888 * 4 2 1 32 32 H 1.08995 * 109.47765 * 299.99977 * 7 5 4 33 33 H 1.09000 * 109.47068 * 60.00791 * 7 5 4 34 34 H 0.96993 * 120.00433 * 179.97438 * 12 11 9 35 35 H 1.08998 * 110.71986 * 324.78974 * 19 17 2 36 36 H 1.09008 * 110.72029 * 87.88057 * 19 17 2 37 37 H 1.08996 * 109.88286 * 141.61344 * 20 19 17 38 38 H 1.09005 * 109.88183 * 262.62501 * 20 19 17 39 39 H 1.09001 * 115.54951 * 34.33088 * 24 22 21 40 40 H 1.08990 * 117.50321 * 0.02562 * 25 24 22 41 41 H 1.09003 * 117.49572 * 145.02574 * 25 24 22 42 42 H 1.08999 * 117.49680 * 214.98295 * 26 24 22 43 43 H 1.08995 * 117.49850 * 0.02562 * 26 24 22 44 44 H 1.08998 * 110.40031 * 217.08260 * 27 21 20 45 45 H 1.09001 * 110.34397 * 94.74746 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4118 7 6 2.6489 -0.7289 3.5877 8 16 2.7107 0.4343 4.9730 9 6 3.3138 -0.6309 6.2404 10 1 3.5230 -1.6674 6.0204 11 6 3.5209 -0.1378 7.5212 12 7 3.2664 1.1256 7.7892 13 14 4.1596 -1.2673 8.8649 14 1 5.6442 -1.2301 8.8787 15 1 3.6408 -0.8142 10.1804 16 1 3.7017 -2.6556 8.6037 17 6 2.0399 -0.7212 -1.2493 18 1 1.6996 -1.7566 -1.2664 19 6 3.5866 -0.6425 -1.3445 20 6 3.8461 -0.7624 -2.8610 21 7 2.6104 -0.3598 -3.5485 22 6 2.4226 -0.3470 -4.8830 23 8 1.3565 0.0051 -5.3419 24 6 3.5370 -0.7701 -5.8050 25 6 4.1828 0.3102 -6.6748 26 6 3.2617 -0.7329 -7.3095 27 6 1.6098 0.0260 -2.5362 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 2.2490 -1.6318 1.1525 32 1 1.9761 -1.5507 3.8326 33 1 3.6480 -1.1213 3.3985 34 1 3.4108 1.4701 8.6843 35 1 3.9481 0.3134 -0.9657 36 1 4.0487 -1.4692 -0.8048 37 1 4.6635 -0.1021 -3.1505 38 1 4.0949 -1.7931 -3.1142 39 1 4.1804 -1.5663 -5.4303 40 1 3.8019 1.3270 -6.5800 41 1 5.2513 0.2250 -6.8726 42 1 3.7239 -1.5047 -7.9250 43 1 2.2747 -0.4020 -7.6325 44 1 0.6143 -0.2928 -2.8452 45 1 1.6307 1.1037 -2.3742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049698454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:07 Heat of formation + Delta-G solvation = -53.744364 kcal Electronic energy + Delta-G solvation = -24746.086594 eV Core-core repulsion = 21083.251201 eV Total energy + Delta-G solvation = -3662.835394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70703 -39.52958 -38.24017 -36.37570 -35.30542 -32.45023 -32.19463 -30.84318 -29.22038 -28.12052 -25.77836 -25.48428 -23.27776 -22.84631 -22.53416 -20.65324 -20.30962 -19.36894 -18.01142 -17.79986 -17.00828 -16.39815 -15.89422 -15.64629 -15.37391 -14.97522 -14.82235 -14.37793 -14.23130 -13.89372 -13.78187 -13.56878 -13.22855 -13.16091 -12.87531 -12.66372 -12.63676 -12.42371 -12.00240 -11.95282 -11.63895 -11.39633 -11.17711 -11.08910 -11.07770 -11.04491 -10.95308 -10.90305 -10.76929 -10.20458 -9.83380 -9.41671 -9.09116 -9.03295 -8.94813 -8.25696 -6.52063 -6.23592 -3.94267 2.11744 2.50174 2.99659 3.06827 3.20614 3.26091 3.29781 3.42099 3.63878 3.95732 4.11901 4.18566 4.29408 4.32972 4.43529 4.46101 4.63583 4.77954 4.90041 4.93609 5.11534 5.13654 5.14580 5.17504 5.20080 5.26806 5.32556 5.43747 5.47358 5.51281 5.57243 5.60731 5.66928 5.67856 5.76019 5.86123 5.90700 6.00187 6.11200 6.19910 6.61585 7.11310 7.57509 7.67864 7.80119 8.33136 8.58967 9.21768 10.83784 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031723 B = 0.001955 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.432022 B =14316.610727 C =14757.458841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.109 4.109 18 H 0.091 0.909 19 C -0.127 4.127 20 C 0.101 3.899 21 N -0.616 5.616 22 C 0.558 3.442 23 O -0.541 6.541 24 C -0.193 4.193 25 C -0.152 4.152 26 C -0.148 4.148 27 C 0.115 3.885 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -7.362 -26.780 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 H 0.109 0.891 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.128 4.128 18 H 0.109 0.891 19 C -0.165 4.165 20 C -0.022 4.022 21 N -0.350 5.350 22 C 0.347 3.653 23 O -0.418 6.418 24 C -0.214 4.214 25 C -0.189 4.189 26 C -0.185 4.185 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.070 -5.043 -26.874 27.364 hybrid contribution 0.977 -2.679 0.965 3.011 sum 2.047 -7.723 -25.909 27.113 Atomic orbital electron populations 1.22235 0.95126 1.02248 1.02927 1.20752 0.94122 0.97300 0.82757 0.89064 1.46033 1.69478 1.13849 1.09397 1.20293 0.76794 0.87216 0.83700 1.90706 1.48187 1.15781 1.84340 1.23534 1.03621 1.04872 0.98403 1.85407 1.86323 1.12808 0.98808 1.22865 1.50987 0.98149 0.96422 0.90945 1.24991 0.95096 0.95541 0.97956 1.70012 1.45441 1.13223 1.21575 0.86173 0.78990 0.80191 0.80167 1.20278 1.20743 1.19709 1.22655 0.95789 1.00621 0.93761 0.89069 1.22720 0.95464 1.04213 0.94109 1.22080 0.87075 1.00321 0.92691 1.48399 1.15251 1.66387 1.04919 1.19330 0.88077 0.77142 0.80722 1.90711 1.27344 1.48392 1.75364 1.22165 1.01279 1.04521 0.93401 1.22938 0.99399 0.95229 1.01338 1.22962 1.02035 1.01618 0.91912 1.22222 0.92905 0.99522 0.86080 0.92441 0.91380 0.91746 0.76937 0.89272 0.89282 0.92169 0.89803 0.89451 0.90988 0.91231 0.85898 0.88205 0.87663 0.87822 0.87377 0.89888 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.30 37.16 0.35 -1.39 16 2 C 0.16 1.62 2.08 -67.93 -0.14 1.48 16 3 H 0.09 1.14 7.57 -51.93 -0.39 0.74 16 4 N -0.73 -8.65 4.85 -53.80 -0.26 -8.91 16 5 C 0.53 9.29 7.81 -10.99 -0.09 9.21 16 6 O -0.52 -11.15 15.53 5.56 0.09 -11.06 16 7 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 8 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 9 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 10 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 13 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 C -0.11 -0.82 2.64 -88.47 -0.23 -1.05 16 18 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 19 C -0.13 -0.85 6.21 -24.90 -0.15 -1.01 16 20 C 0.10 0.63 6.31 -3.06 -0.02 0.61 16 21 N -0.62 -5.41 3.33 -170.48 -0.57 -5.98 16 22 C 0.56 5.80 7.63 -10.98 -0.08 5.72 16 23 O -0.54 -7.65 16.51 5.56 0.09 -7.56 16 24 C -0.19 -1.37 5.54 -91.77 -0.51 -1.88 16 25 C -0.15 -0.90 10.23 -26.76 -0.27 -1.18 16 26 C -0.15 -0.96 10.04 -26.75 -0.27 -1.23 16 27 C 0.12 1.02 5.42 -2.51 -0.01 1.00 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 31 H 0.40 3.54 8.60 -40.82 -0.35 3.19 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 36 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.34 7.98 -51.93 -0.41 -0.08 16 39 H 0.12 0.63 7.67 -51.93 -0.40 0.24 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 44 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 45 H 0.07 0.68 8.04 -51.93 -0.42 0.27 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -35.87 387.62 -9.68 -45.55 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.35 Total: 0.19 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.02 Total: -5.22 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.09 Total: -40.06 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.87 -9.68 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049698454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.190 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds