Wall clock time and date at job start Tue Mar 31 2020 15:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47101 * 2 1 4 4 N 1.46494 * 109.47457 * 239.99668 * 2 1 3 5 5 C 1.34775 * 120.00023 * 84.99869 * 4 2 1 6 6 O 1.21281 * 119.99833 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00178 * 180.02562 * 5 4 2 8 8 C 1.53000 * 117.49974 * 248.74855 * 7 5 4 9 9 C 1.53001 * 117.49809 * 180.08589 * 7 5 4 10 10 C 1.53009 * 109.46855 * 119.99871 * 2 1 3 11 11 H 1.08999 * 110.88448 * 63.87802 * 10 2 1 12 12 C 1.55160 * 111.00399 * 299.99865 * 10 2 1 13 13 C 1.54316 * 102.94268 * 206.42607 * 12 10 2 14 14 N 1.47026 * 107.27365 * 22.19228 * 13 12 10 15 15 C 1.34771 * 125.65100 * 180.79395 * 14 13 12 16 16 O 1.21280 * 119.99952 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99988 * 0.02691 * 15 14 13 18 18 S 1.80993 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00132 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99797 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00331 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00111 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46923 * 90.00099 * 23 21 19 25 25 H 1.48495 * 109.46935 * 210.00022 * 23 21 19 26 26 H 1.48498 * 109.46981 * 329.99991 * 23 21 19 27 27 C 1.47425 * 108.70074 * 1.05989 * 14 13 12 28 28 H 1.09002 * 109.46851 * 60.00041 * 1 2 3 29 29 H 1.08997 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47097 * 300.00377 * 1 2 3 31 31 H 0.97006 * 120.00183 * 265.00668 * 4 2 1 32 32 H 1.08994 * 115.54608 * 34.41860 * 7 5 4 33 33 H 1.09002 * 117.49816 * 0.02562 * 8 7 5 34 34 H 1.08997 * 117.49755 * 145.01854 * 8 7 5 35 35 H 1.09002 * 117.50022 * 214.97678 * 9 7 5 36 36 H 1.08999 * 117.50132 * 359.97438 * 9 7 5 37 37 H 1.08997 * 110.71793 * 88.05937 * 12 10 2 38 38 H 1.09003 * 110.87062 * 324.86280 * 12 10 2 39 39 H 1.09004 * 109.88447 * 262.78098 * 13 12 10 40 40 H 1.08996 * 110.01243 * 141.68527 * 13 12 10 41 41 H 1.08993 * 109.46871 * 299.99760 * 17 15 14 42 42 H 1.09000 * 109.46865 * 59.99842 * 17 15 14 43 43 H 0.97001 * 120.00554 * 179.97438 * 22 21 19 44 44 H 1.09001 * 110.36478 * 94.71036 * 27 14 13 45 45 H 1.08998 * 110.36859 * 217.03414 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1471 -0.0184 -2.3570 6 8 1.8591 1.1585 -2.4115 7 6 2.6490 -0.7289 -3.5876 8 6 4.0321 -0.3397 -4.1135 9 6 2.7749 0.0896 -4.8741 10 6 2.0400 -0.7213 1.2494 11 1 1.7467 -1.7710 1.2389 12 6 1.5425 -0.0177 2.5397 13 6 2.6248 -0.3891 3.5751 14 7 3.8426 -0.7365 2.8281 15 6 5.0110 -1.1321 3.3709 16 8 5.9544 -1.3939 2.6551 17 6 5.1454 -1.2492 4.8674 18 16 6.8194 -1.7987 5.2817 19 6 6.6993 -1.8476 7.0389 20 1 5.7727 -1.5793 7.5245 21 6 7.7951 -2.2321 7.7990 22 7 8.9243 -2.5596 7.2073 23 14 7.6679 -2.2832 9.6620 24 1 7.2119 -3.6301 10.0902 25 1 8.9984 -1.9988 10.2570 26 1 6.6923 -1.2616 10.1198 27 6 3.5759 -0.5742 1.3873 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6319 -1.1525 32 1 2.3499 -1.7727 -3.6825 33 1 4.5792 0.4300 -3.5691 34 1 4.6427 -1.1274 -4.5547 35 1 2.5591 -0.4158 -5.8154 36 1 2.4943 1.1420 -4.8305 37 1 0.5704 -0.4077 2.8412 38 1 1.4968 1.0624 2.4001 39 1 2.2954 -1.2444 4.1652 40 1 2.8212 0.4596 4.2302 41 1 4.9572 -0.2786 5.3261 42 1 4.4224 -1.9741 5.2414 43 1 9.6903 -2.8280 7.7384 44 1 3.8942 0.4127 1.0514 45 1 4.0841 -1.3520 0.8174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:09 Heat of formation + Delta-G solvation = -53.862814 kcal Electronic energy + Delta-G solvation = -24916.039665 eV Core-core repulsion = 21253.199135 eV Total energy + Delta-G solvation = -3662.840530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58411 -39.72830 -37.85705 -36.51904 -35.34379 -32.44695 -32.37795 -30.24524 -29.67989 -28.14138 -25.52026 -25.27763 -23.48933 -22.80504 -22.53070 -20.85931 -20.15925 -19.28581 -17.89509 -17.61440 -17.03665 -16.58689 -15.82741 -15.65758 -15.14815 -14.92841 -14.81198 -14.41949 -14.33968 -14.08786 -13.86842 -13.58738 -13.17922 -12.89369 -12.80154 -12.63183 -12.49828 -12.21834 -11.97030 -11.91616 -11.80684 -11.45116 -11.25272 -11.07386 -11.03135 -10.99922 -10.97830 -10.85832 -10.77023 -10.11472 -9.82943 -9.47018 -9.39147 -9.07714 -8.53322 -8.24799 -6.51654 -6.22655 -3.93497 2.19457 2.73601 2.88848 3.04006 3.21387 3.25002 3.29498 3.50072 3.59637 4.07591 4.19142 4.24016 4.34577 4.39902 4.44780 4.51263 4.73168 4.86610 4.88331 4.95386 5.06674 5.12436 5.14120 5.20265 5.25665 5.34144 5.37883 5.45243 5.51076 5.57246 5.60373 5.62178 5.69813 5.75419 5.76182 5.80621 5.91436 5.94259 6.12487 6.16955 6.38694 7.16547 7.58346 7.64364 7.92042 8.34147 8.53305 9.22522 10.84789 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.002216 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.263142 B =12632.003972 C =13659.249375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.722 5.722 5 C 0.546 3.454 6 O -0.541 6.541 7 C -0.198 4.198 8 C -0.151 4.151 9 C -0.149 4.149 10 C -0.111 4.111 11 H 0.092 0.908 12 C -0.120 4.120 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.116 3.884 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.472 3.344 -18.414 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.110 0.890 4 N -0.373 5.373 5 C 0.332 3.668 6 O -0.418 6.418 7 C -0.219 4.219 8 C -0.189 4.189 9 C -0.186 4.186 10 C -0.131 4.131 11 H 0.110 0.890 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.237 0.763 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.995 3.725 -19.428 26.742 hybrid contribution -1.135 -0.334 2.177 2.478 sum -19.130 3.391 -17.251 25.982 Atomic orbital electron populations 1.22177 0.94716 1.02329 1.02825 1.20909 0.94242 0.97336 0.82592 0.88997 1.46010 1.67556 1.14293 1.09472 1.19663 0.76768 0.86639 0.83700 1.90699 1.50087 1.16007 1.84994 1.22209 1.04015 1.01064 0.94605 1.22976 0.89515 1.03702 1.02673 1.22963 1.00784 1.01308 0.93542 1.22681 0.95434 1.00847 0.94121 0.88984 1.22653 0.98450 1.01345 0.93417 1.22005 0.84530 1.00784 0.94898 1.48499 1.11949 1.69193 1.06823 1.20041 0.80455 0.75551 0.90281 1.90709 1.37201 1.48238 1.62824 1.23503 1.07886 1.05036 0.93252 1.85401 1.04598 1.87010 1.06472 1.22852 1.01222 1.53052 0.91167 0.90930 1.24997 0.94482 0.94572 0.99564 1.70016 1.01923 1.42287 1.36040 0.86162 0.77698 0.78567 0.83041 1.20264 1.20737 1.19687 1.22135 0.93885 1.01928 0.82809 0.91992 0.92310 0.91170 0.76330 0.85866 0.88075 0.87622 0.87949 0.87429 0.89558 0.90074 0.91154 0.91096 0.89300 0.89312 0.92169 0.91682 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.26 37.16 0.34 -0.73 16 2 C 0.15 1.18 2.11 -67.93 -0.14 1.04 16 3 H 0.09 0.89 7.51 -51.93 -0.39 0.50 16 4 N -0.72 -5.44 4.93 -53.81 -0.27 -5.71 16 5 C 0.55 5.25 7.58 -10.98 -0.08 5.17 16 6 O -0.54 -7.21 15.92 5.56 0.09 -7.12 16 7 C -0.20 -1.42 6.19 -91.77 -0.57 -1.98 16 8 C -0.15 -1.04 10.24 -26.69 -0.27 -1.32 16 9 C -0.15 -1.03 10.05 -26.69 -0.27 -1.30 16 10 C -0.11 -0.85 2.65 -88.46 -0.23 -1.09 16 11 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.12 -0.84 5.28 -24.90 -0.13 -0.98 16 13 C 0.10 1.03 6.49 -3.07 -0.02 1.01 16 14 N -0.63 -8.89 3.33 -170.52 -0.57 -9.46 16 15 C 0.55 10.61 7.87 -10.99 -0.09 10.53 16 16 O -0.52 -12.02 16.12 5.56 0.09 -11.93 16 17 C -0.15 -3.01 5.35 36.01 0.19 -2.81 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.12 1.34 6.23 -2.53 -0.02 1.32 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 7.28 -51.92 -0.38 0.01 16 31 H 0.40 2.22 8.60 -40.82 -0.35 1.87 16 32 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.91 7.67 -51.93 -0.40 0.51 16 37 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.08 0.53 8.04 -51.93 -0.42 0.12 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.06 0.80 7.98 -51.93 -0.41 0.38 16 45 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -36.54 388.16 -9.78 -46.32 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.38 Total: -0.88 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.09 Total: -4.09 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.10 Total: -40.60 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.18 Total: -19.05 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.54 -9.78 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.543 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds