Wall clock time and date at job start Tue Mar 31 2020 15:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46735 * 2 1 4 4 N 1.46493 * 109.47053 * 240.00202 * 2 1 3 5 5 C 1.34775 * 120.00346 * 84.99988 * 4 2 1 6 6 O 1.21280 * 119.99877 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00127 * 179.97438 * 5 4 2 8 8 C 1.53000 * 117.49860 * 248.62351 * 7 5 4 9 9 C 1.52998 * 60.00096 * 252.51008 * 8 7 5 10 10 C 1.52995 * 109.46651 * 120.00151 * 2 1 3 11 11 H 1.09002 * 110.89152 * 58.14497 * 10 2 1 12 12 C 1.55161 * 111.00373 * 182.02787 * 10 2 1 13 13 C 1.54320 * 102.94643 * 153.57348 * 12 10 2 14 14 N 1.47028 * 107.27147 * 337.81060 * 13 12 10 15 15 C 1.34773 * 125.64952 * 178.90371 * 14 13 12 16 16 O 1.21281 * 119.99860 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00150 * 0.02562 * 15 14 13 18 18 S 1.80999 * 109.47209 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99899 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99636 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00092 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47344 * 179.97438 * 23 21 19 25 25 H 1.48504 * 109.47383 * 299.99871 * 23 21 19 26 26 H 1.48503 * 109.47414 * 59.99851 * 23 21 19 27 27 C 1.47428 * 108.70274 * 359.16360 * 14 13 12 28 28 H 1.09005 * 109.46973 * 64.98291 * 1 2 3 29 29 H 1.08995 * 109.46932 * 184.97909 * 1 2 3 30 30 H 1.09002 * 109.47150 * 304.98506 * 1 2 3 31 31 H 0.97000 * 119.99790 * 264.99993 * 4 2 1 32 32 H 1.08999 * 115.55058 * 34.33442 * 7 5 4 33 33 H 1.08998 * 117.49885 * 0.02562 * 8 7 5 34 34 H 1.09001 * 117.49643 * 145.02527 * 8 7 5 35 35 H 1.09001 * 117.50199 * 252.50986 * 9 8 7 36 36 H 1.09003 * 117.51347 * 107.48073 * 9 8 7 37 37 H 1.09009 * 110.71692 * 35.20898 * 12 10 2 38 38 H 1.09001 * 110.72219 * 271.94250 * 12 10 2 39 39 H 1.09002 * 109.88732 * 218.39160 * 13 12 10 40 40 H 1.08997 * 110.00781 * 97.29609 * 13 12 10 41 41 H 1.09000 * 109.46907 * 60.00231 * 17 15 14 42 42 H 1.08997 * 109.47332 * 300.00519 * 17 15 14 43 43 H 0.97000 * 119.99551 * 0.02562 * 22 21 19 44 44 H 1.08999 * 110.36434 * 142.73778 * 27 14 13 45 45 H 1.08998 * 110.36755 * 265.07066 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1586 -2.4115 7 6 2.6500 -0.7285 -3.5874 8 6 4.0317 -0.3362 -4.1144 9 6 2.7740 0.0896 -4.8744 10 6 2.0399 -0.7213 1.2492 11 1 1.6627 -1.7432 1.2892 12 6 3.5901 -0.6979 1.3112 13 6 3.8774 -0.8052 2.8236 14 7 2.6720 -0.3478 3.5304 15 6 2.5132 -0.3088 4.8681 16 8 1.4706 0.0887 5.3436 17 6 3.6309 -0.7589 5.7732 18 16 3.1151 -0.5884 7.4997 19 6 4.5682 -1.1663 8.3116 20 1 5.4203 -1.4866 7.7304 21 6 4.6177 -1.2100 9.6980 22 7 3.5793 -0.8191 10.4063 23 14 6.1584 -1.8220 10.5588 24 1 5.9579 -1.7696 12.0293 25 1 6.4333 -3.2217 10.1458 26 1 7.3092 -0.9608 10.1857 27 6 1.6636 0.0551 2.5333 28 1 -0.3633 0.4346 -0.9313 29 1 -0.3633 -1.0237 0.0892 30 1 -0.3633 0.5892 0.8420 31 1 2.2491 -1.6317 -1.1526 32 1 2.3529 -1.7730 -3.6817 33 1 4.5772 0.4353 -3.5710 34 1 4.6441 -1.1228 -4.5555 35 1 2.5588 -0.4167 -5.8154 36 1 2.4915 1.1415 -4.8312 37 1 3.9780 0.2388 0.9105 38 1 4.0104 -1.5502 0.7773 39 1 4.7241 -0.1710 3.0861 40 1 4.0929 -1.8400 3.0897 41 1 4.5129 -0.1438 5.5947 42 1 3.8679 -1.8025 5.5665 43 1 2.7794 -0.5010 9.9593 44 1 0.6653 -0.2264 2.8683 45 1 1.7158 1.1289 2.3535 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:12 Heat of formation + Delta-G solvation = -58.983277 kcal Electronic energy + Delta-G solvation = -24819.217626 eV Core-core repulsion = 21156.155056 eV Total energy + Delta-G solvation = -3663.062570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67218 -39.83144 -37.94398 -36.62793 -35.42588 -32.54226 -32.33771 -30.73493 -29.66762 -27.87825 -25.61101 -24.86345 -23.68153 -22.91592 -22.35368 -20.91535 -20.29210 -19.42620 -18.27318 -17.89345 -17.13823 -16.77949 -15.90077 -15.72341 -15.31952 -15.07067 -14.56119 -14.33245 -14.25885 -14.13629 -13.84147 -13.54594 -13.21400 -13.04708 -12.97104 -12.70145 -12.56138 -12.38485 -12.04491 -11.95023 -11.86944 -11.76337 -11.47814 -11.20876 -11.12907 -11.06261 -10.95555 -10.92973 -10.21126 -10.18550 -9.60091 -9.59588 -9.46528 -9.02807 -8.62133 -8.23989 -6.69123 -6.63475 -4.01631 2.09358 2.58586 2.81603 2.93454 3.31560 3.36697 3.37566 3.43796 3.56855 4.03648 4.13084 4.23114 4.25160 4.31990 4.37102 4.39072 4.62525 4.83297 4.84724 4.87383 4.99071 5.09970 5.10794 5.16153 5.21102 5.25248 5.36055 5.37071 5.41400 5.44835 5.52439 5.59866 5.61168 5.64086 5.66922 5.79510 5.82814 5.91510 5.99265 6.09315 6.30026 7.08073 7.54163 7.83442 7.90046 8.42056 8.48660 9.25731 10.80390 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.002026 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.005881 B =13819.664870 C =14571.505860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 H 0.092 0.908 4 N -0.720 5.720 5 C 0.544 3.456 6 O -0.539 6.539 7 C -0.197 4.197 8 C -0.152 4.152 9 C -0.148 4.148 10 C -0.111 4.111 11 H 0.092 0.908 12 C -0.123 4.123 13 C 0.101 3.899 14 N -0.625 5.625 15 C 0.547 3.453 16 O -0.515 6.515 17 C -0.124 4.124 18 S -0.116 6.116 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.118 3.882 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -3.152 -30.970 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.111 0.889 4 N -0.371 5.371 5 C 0.330 3.670 6 O -0.416 6.416 7 C -0.218 4.218 8 C -0.190 4.190 9 C -0.186 4.186 10 C -0.131 4.131 11 H 0.110 0.890 12 C -0.161 4.161 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.336 3.664 16 O -0.390 6.390 17 C -0.275 4.275 18 S 0.110 5.890 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.005 4.005 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.733 -1.968 -28.677 28.754 hybrid contribution 0.872 -0.890 -2.081 2.426 sum 0.138 -2.859 -30.758 30.891 Atomic orbital electron populations 1.22219 0.94692 1.02507 1.03003 1.20876 0.94347 0.97231 0.82541 0.88948 1.45956 1.67560 1.14155 1.09420 1.19660 0.76957 0.86678 0.83660 1.90716 1.49920 1.16038 1.84891 1.22213 1.03844 1.01084 0.94689 1.22948 0.89557 1.03626 1.02830 1.22960 1.00574 1.01435 0.93601 1.22640 0.96147 1.00623 0.93701 0.88964 1.22675 0.94974 1.03300 0.95133 1.22016 0.88422 1.00296 0.91548 1.48454 1.16162 1.66822 1.04861 1.19998 0.88865 0.77339 0.80215 1.90714 1.28726 1.45609 1.73906 1.23287 0.99419 1.04140 1.00648 1.84830 1.24622 1.86286 0.93272 1.23690 1.01129 1.54229 0.96491 0.91627 1.26062 1.03554 0.94677 0.93251 1.70801 1.04594 1.37474 1.38852 0.83329 0.73262 0.76160 0.76240 1.20252 1.21136 1.21131 1.22034 0.93533 0.98636 0.86312 0.91927 0.92209 0.91036 0.76484 0.85870 0.88172 0.87716 0.87898 0.87369 0.90310 0.89915 0.91147 0.91162 0.89038 0.89053 0.90984 0.89969 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.25 37.16 0.34 -0.94 16 2 C 0.15 1.17 2.09 -67.93 -0.14 1.02 16 3 H 0.09 0.88 7.55 -51.93 -0.39 0.49 16 4 N -0.72 -4.48 4.79 -53.81 -0.26 -4.74 16 5 C 0.54 4.54 7.58 -10.99 -0.08 4.46 16 6 O -0.54 -6.74 15.92 5.56 0.09 -6.65 16 7 C -0.20 -1.10 6.19 -91.77 -0.57 -1.67 16 8 C -0.15 -0.74 10.23 -26.73 -0.27 -1.01 16 9 C -0.15 -0.83 10.04 -26.73 -0.27 -1.10 16 10 C -0.11 -0.84 2.61 -88.58 -0.23 -1.07 16 11 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.12 -0.87 6.15 -24.90 -0.15 -1.02 16 13 C 0.10 1.02 6.49 -3.06 -0.02 1.00 16 14 N -0.63 -8.76 3.33 -170.65 -0.57 -9.33 16 15 C 0.55 10.53 7.87 -10.99 -0.09 10.44 16 16 O -0.52 -11.92 16.12 5.56 0.09 -11.83 16 17 C -0.12 -2.55 5.35 36.01 0.19 -2.36 16 18 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 19 C -0.61 -17.55 9.50 30.94 0.29 -17.25 16 20 H 0.07 1.81 7.80 -52.48 -0.41 1.40 16 21 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 22 N -0.88 -27.55 13.67 55.49 0.76 -26.79 16 23 Si 1.08 24.89 29.92 -169.99 -5.09 19.80 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.12 1.34 5.60 -2.64 -0.01 1.32 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.56 7.65 -51.93 -0.40 0.17 16 31 H 0.40 1.49 8.60 -40.82 -0.35 1.14 16 32 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.80 7.67 -51.93 -0.40 0.40 16 37 H 0.08 0.58 8.04 -51.92 -0.42 0.16 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.28 8.86 7.12 -40.82 -0.29 8.57 16 44 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 45 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -37.21 387.28 -9.71 -46.92 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.36 Total: -0.69 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.11 Total: -7.26 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.07 Total: -40.86 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.18 Total: -18.48 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.80 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.21 -9.71 -46.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.065 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds