Wall clock time and date at job start Tue Mar 31 2020 15:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47371 * 2 1 4 4 N 1.46503 * 109.46943 * 119.99894 * 2 1 3 5 5 C 1.34777 * 120.00063 * 274.99410 * 4 2 1 6 6 O 1.21279 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.53000 * 117.50143 * 248.75012 * 7 5 4 9 9 C 1.53000 * 117.49708 * 180.08947 * 7 5 4 10 10 C 1.52996 * 109.47067 * 239.99659 * 2 1 3 11 11 H 1.08999 * 110.91890 * 302.45074 * 10 2 1 12 12 C 1.55155 * 111.00371 * 66.35060 * 10 2 1 13 13 C 1.54333 * 103.02548 * 153.38293 * 12 10 2 14 14 N 1.47029 * 107.25978 * 338.14186 * 13 12 10 15 15 C 1.34775 * 125.64627 * 178.85263 * 14 13 12 16 16 O 1.21284 * 120.00295 * 179.69512 * 15 14 13 17 17 C 1.50708 * 119.99957 * 359.68523 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48511 * 109.47049 * 269.99633 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99707 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00426 * 23 21 19 27 27 C 1.47423 * 108.70358 * 358.58391 * 14 13 12 28 28 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46713 * 300.00155 * 1 2 3 30 30 H 1.08998 * 109.47210 * 59.99795 * 1 2 3 31 31 H 0.97006 * 119.99653 * 95.00048 * 4 2 1 32 32 H 1.09004 * 115.55261 * 34.42273 * 7 5 4 33 33 H 1.09002 * 117.49729 * 359.97438 * 8 7 5 34 34 H 1.08992 * 117.50024 * 145.02480 * 8 7 5 35 35 H 1.08997 * 117.50196 * 214.98274 * 9 7 5 36 36 H 1.09004 * 117.49744 * 359.97438 * 9 7 5 37 37 H 1.09007 * 110.72462 * 271.94247 * 12 10 2 38 38 H 1.09001 * 110.72066 * 35.21253 * 12 10 2 39 39 H 1.09000 * 109.99568 * 218.67056 * 13 12 10 40 40 H 1.08995 * 109.78447 * 97.49676 * 13 12 10 41 41 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 42 42 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 43 43 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 44 44 H 1.09005 * 110.36322 * 143.19514 * 27 14 13 45 45 H 1.09000 * 110.37003 * 265.40847 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1584 2.4117 7 6 2.6488 -0.7288 3.5877 8 6 1.6556 -0.9496 4.7304 9 6 2.7710 0.0888 4.8752 10 6 2.0400 -0.7213 -1.2492 11 1 1.6546 -1.7399 -1.2950 12 6 1.6775 0.0687 -2.5344 13 6 2.7786 -0.3590 -3.5277 14 7 3.9163 -0.8467 -2.7343 15 6 5.0706 -1.3324 -3.2326 16 8 5.9472 -1.7030 -2.4809 17 6 5.2719 -1.4151 -4.7238 18 16 6.9081 -2.1050 -5.0744 19 6 6.8763 -2.0881 -6.8360 20 1 6.0052 -1.7190 -7.3568 21 6 7.9708 -2.5492 -7.5543 22 7 9.0324 -2.9995 -6.9195 23 14 7.9373 -2.5306 -9.4219 24 1 7.3833 -3.8154 -9.9198 25 1 7.0845 -1.4090 -9.8906 26 1 9.3177 -2.3531 -9.9400 27 6 3.5880 -0.7104 -1.3036 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 2.2490 -1.6318 1.1526 32 1 3.3940 -1.5046 3.4117 33 1 0.6394 -0.5804 4.5923 34 1 1.7476 -1.8703 5.3063 35 1 3.5962 -0.1492 5.5463 36 1 2.4888 1.1408 4.8319 37 1 0.6920 -0.2202 -2.8998 38 1 1.7230 1.1425 -2.3528 39 1 3.0868 0.4939 -4.1324 40 1 2.4060 -1.1564 -4.1706 41 1 5.1976 -0.4173 -5.1563 42 1 4.5064 -2.0576 -5.1587 43 1 9.0499 -3.0088 -5.9497 44 1 3.9934 -1.5505 -0.7397 45 1 3.9763 0.2303 -0.9132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:15 Heat of formation + Delta-G solvation = -59.389257 kcal Electronic energy + Delta-G solvation = -24915.685533 eV Core-core repulsion = 21252.605358 eV Total energy + Delta-G solvation = -3663.080175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63497 -39.79814 -37.93347 -36.56905 -35.39516 -32.54778 -32.42848 -30.35971 -29.75195 -28.24304 -25.31145 -24.88103 -23.56840 -22.87835 -22.53723 -20.89004 -20.23601 -19.36472 -18.27183 -17.79788 -17.10019 -16.77962 -15.91158 -15.57627 -15.45537 -14.86688 -14.78990 -14.44481 -14.22683 -14.06206 -13.85191 -13.64707 -13.12038 -12.97123 -12.86005 -12.69618 -12.40778 -12.32128 -12.05626 -11.95912 -11.88189 -11.86268 -11.52599 -11.26751 -11.06682 -10.99673 -10.92306 -10.92103 -10.20505 -10.14911 -9.60635 -9.56662 -9.44926 -9.02933 -8.62146 -8.24230 -6.69561 -6.63988 -4.02086 2.15812 2.70403 2.76253 2.92468 3.31303 3.37550 3.43147 3.44880 3.55055 4.03521 4.16916 4.23983 4.30201 4.33571 4.39667 4.46756 4.73556 4.81710 4.82176 4.90344 4.97207 5.08931 5.15334 5.16591 5.20691 5.30460 5.35138 5.35564 5.42364 5.51134 5.52113 5.55585 5.61890 5.67592 5.71290 5.76091 5.81194 5.90147 5.99124 6.12692 6.29651 7.13340 7.54079 7.88897 7.90623 8.41642 8.48409 9.25330 10.79999 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.002158 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.460947 B =12968.890596 C =13846.259304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.723 5.723 5 C 0.546 3.454 6 O -0.541 6.541 7 C -0.198 4.198 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.112 4.112 11 H 0.092 0.908 12 C -0.120 4.120 13 C 0.101 3.899 14 N -0.626 5.626 15 C 0.547 3.453 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.117 6.117 19 C -0.607 4.607 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.279 1.279 27 C 0.116 3.884 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 4.863 18.036 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.110 0.890 4 N -0.374 5.374 5 C 0.333 3.667 6 O -0.418 6.418 7 C -0.219 4.219 8 C -0.190 4.190 9 C -0.185 4.185 10 C -0.131 4.131 11 H 0.111 0.889 12 C -0.159 4.159 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.335 3.665 16 O -0.391 6.391 17 C -0.275 4.275 18 S 0.109 5.891 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.237 0.763 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.094 4.760 17.803 26.536 hybrid contribution -1.911 0.302 0.168 1.942 sum -21.005 5.062 17.971 28.103 Atomic orbital electron populations 1.22166 0.94680 1.02346 1.02800 1.20913 0.94278 0.97314 0.82550 0.88963 1.46011 1.67619 1.14213 1.09518 1.19655 0.76765 0.86605 0.83708 1.90698 1.50221 1.15905 1.84942 1.22229 1.05261 1.05039 0.89344 1.22945 0.95631 1.01547 0.98895 1.22969 1.00784 0.98372 0.96357 1.22690 0.95501 1.00675 0.94263 0.88922 1.22661 0.98699 1.00753 0.93757 1.22030 0.86240 0.99536 0.94474 1.48465 1.16157 1.64859 1.06848 1.20012 0.79918 0.76046 0.90486 1.90710 1.40963 1.47077 1.60314 1.23287 1.05499 1.05197 0.93491 1.84825 1.13291 1.82227 1.08768 1.23715 1.08029 1.53718 0.90003 0.91569 1.26069 0.91274 0.92720 1.07515 1.70770 1.28867 1.40739 1.11457 0.83285 0.76328 0.76537 0.72513 1.21040 1.21286 1.20486 1.22133 0.93354 1.02218 0.83043 0.92281 0.91997 0.91204 0.76311 0.85682 0.88320 0.87731 0.87823 0.87389 0.89449 0.90060 0.91030 0.91088 0.89033 0.89034 0.90953 0.90484 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.33 37.16 0.35 -0.70 16 2 C 0.15 1.16 2.09 -67.93 -0.14 1.02 16 3 H 0.09 0.87 7.54 -51.93 -0.39 0.48 16 4 N -0.72 -5.41 4.77 -53.81 -0.26 -5.67 16 5 C 0.55 5.23 7.58 -10.99 -0.08 5.14 16 6 O -0.54 -7.15 15.92 5.56 0.09 -7.06 16 7 C -0.20 -1.42 6.19 -91.77 -0.57 -1.98 16 8 C -0.15 -0.89 10.24 -26.69 -0.27 -1.16 16 9 C -0.15 -1.02 10.05 -26.69 -0.27 -1.29 16 10 C -0.11 -0.84 2.63 -88.48 -0.23 -1.07 16 11 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 12 C -0.12 -0.83 5.58 -24.89 -0.14 -0.97 16 13 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 14 N -0.63 -8.79 3.33 -170.51 -0.57 -9.35 16 15 C 0.55 10.52 7.87 -10.98 -0.09 10.44 16 16 O -0.52 -11.93 16.12 5.55 0.09 -11.84 16 17 C -0.12 -2.55 5.35 36.01 0.19 -2.36 16 18 S -0.12 -3.19 19.60 -107.50 -2.11 -5.30 16 19 C -0.61 -17.52 9.50 30.94 0.29 -17.23 16 20 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 21 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.58 13.67 55.49 0.76 -26.83 16 23 Si 1.09 24.98 29.92 -169.99 -5.09 19.89 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 C 0.12 1.32 6.08 -2.53 -0.02 1.30 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.38 7.50 -51.93 -0.39 -0.01 16 31 H 0.40 2.25 8.60 -40.82 -0.35 1.90 16 32 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.91 7.67 -51.93 -0.40 0.51 16 37 H 0.09 0.44 8.13 -51.93 -0.42 0.02 16 38 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.28 8.86 7.12 -40.82 -0.29 8.57 16 44 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 45 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -37.23 387.13 -9.69 -46.92 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.35 Total: 0.37 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.09 Total: -6.95 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.07 Total: -41.85 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.18 Total: -18.90 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.89 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.11 Total: -5.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.23 -9.69 -46.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.474 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds