Wall clock time and date at job start Tue Mar 31 2020 15:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47371 * 2 1 4 4 N 1.46503 * 109.46943 * 119.99894 * 2 1 3 5 5 C 1.34777 * 120.00063 * 274.99410 * 4 2 1 6 6 O 1.21279 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.53000 * 117.50143 * 248.75012 * 7 5 4 9 9 C 1.53000 * 117.49708 * 180.08947 * 7 5 4 10 10 C 1.52996 * 109.47067 * 239.99659 * 2 1 3 11 11 H 1.08999 * 110.91890 * 302.45074 * 10 2 1 12 12 C 1.55155 * 111.00371 * 66.35060 * 10 2 1 13 13 C 1.54333 * 103.02548 * 153.38293 * 12 10 2 14 14 N 1.47029 * 107.25978 * 338.14186 * 13 12 10 15 15 C 1.34775 * 125.64627 * 178.85263 * 14 13 12 16 16 O 1.21284 * 120.00295 * 179.69512 * 15 14 13 17 17 C 1.50708 * 119.99957 * 359.68523 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48511 * 109.47049 * 269.99633 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99707 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00426 * 23 21 19 27 27 C 1.47423 * 108.70358 * 358.58391 * 14 13 12 28 28 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46713 * 300.00155 * 1 2 3 30 30 H 1.08998 * 109.47210 * 59.99795 * 1 2 3 31 31 H 0.97006 * 119.99653 * 95.00048 * 4 2 1 32 32 H 1.09004 * 115.55261 * 34.42273 * 7 5 4 33 33 H 1.09002 * 117.49729 * 359.97438 * 8 7 5 34 34 H 1.08992 * 117.50024 * 145.02480 * 8 7 5 35 35 H 1.08997 * 117.50196 * 214.98274 * 9 7 5 36 36 H 1.09004 * 117.49744 * 359.97438 * 9 7 5 37 37 H 1.09007 * 110.72462 * 271.94247 * 12 10 2 38 38 H 1.09001 * 110.72066 * 35.21253 * 12 10 2 39 39 H 1.09000 * 109.99568 * 218.67056 * 13 12 10 40 40 H 1.08995 * 109.78447 * 97.49676 * 13 12 10 41 41 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 42 42 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 43 43 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 44 44 H 1.09005 * 110.36322 * 143.19514 * 27 14 13 45 45 H 1.09000 * 110.37003 * 265.40847 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1584 2.4117 7 6 2.6488 -0.7288 3.5877 8 6 1.6556 -0.9496 4.7304 9 6 2.7710 0.0888 4.8752 10 6 2.0400 -0.7213 -1.2492 11 1 1.6546 -1.7399 -1.2950 12 6 1.6775 0.0687 -2.5344 13 6 2.7786 -0.3590 -3.5277 14 7 3.9163 -0.8467 -2.7343 15 6 5.0706 -1.3324 -3.2326 16 8 5.9472 -1.7030 -2.4809 17 6 5.2719 -1.4151 -4.7238 18 16 6.9081 -2.1050 -5.0744 19 6 6.8763 -2.0881 -6.8360 20 1 6.0052 -1.7190 -7.3568 21 6 7.9708 -2.5492 -7.5543 22 7 9.0324 -2.9995 -6.9195 23 14 7.9373 -2.5306 -9.4219 24 1 7.3833 -3.8154 -9.9198 25 1 7.0845 -1.4090 -9.8906 26 1 9.3177 -2.3531 -9.9400 27 6 3.5880 -0.7104 -1.3036 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 2.2490 -1.6318 1.1526 32 1 3.3940 -1.5046 3.4117 33 1 0.6394 -0.5804 4.5923 34 1 1.7476 -1.8703 5.3063 35 1 3.5962 -0.1492 5.5463 36 1 2.4888 1.1408 4.8319 37 1 0.6920 -0.2202 -2.8998 38 1 1.7230 1.1425 -2.3528 39 1 3.0868 0.4939 -4.1324 40 1 2.4060 -1.1564 -4.1706 41 1 5.1976 -0.4173 -5.1563 42 1 4.5064 -2.0576 -5.1587 43 1 9.0499 -3.0088 -5.9497 44 1 3.9934 -1.5505 -0.7397 45 1 3.9763 0.2303 -0.9132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050098181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:15 Heat of formation + Delta-G solvation = -84.836099 kcal Electronic energy + Delta-G solvation = -24916.788990 eV Core-core repulsion = 21252.605358 eV Total energy + Delta-G solvation = -3664.183632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48638 -40.84512 -39.02832 -37.25819 -36.25730 -34.76492 -33.38239 -31.52398 -30.63628 -29.32171 -27.10356 -25.93550 -24.60814 -23.40618 -23.19702 -21.57652 -20.98905 -20.82051 -20.06029 -18.53334 -18.12861 -17.92600 -17.05596 -16.89057 -16.27153 -16.08002 -15.73251 -15.60239 -15.58768 -15.22817 -14.94876 -14.61578 -14.51165 -14.08825 -13.96892 -13.76395 -13.56780 -13.54499 -13.36781 -12.92751 -12.75451 -12.66871 -12.45595 -12.21588 -11.99972 -11.94520 -11.66957 -11.57535 -11.56256 -11.46209 -11.12056 -11.11707 -10.89726 -10.35076 -10.15341 -9.80714 -8.94260 -8.90517 -6.30075 1.12034 1.42124 1.45679 1.50808 1.60978 1.79085 1.95815 2.09391 2.32453 2.89659 3.00903 3.06121 3.31861 3.42530 3.61588 3.72032 3.78520 3.85656 3.96356 4.06268 4.16699 4.20960 4.23526 4.28154 4.30375 4.36019 4.46938 4.60613 4.71461 4.75865 4.78305 4.85027 4.87738 4.95031 5.01219 5.05257 5.15970 5.19601 5.28330 5.33246 5.49278 5.62854 6.13060 6.26828 6.49840 6.97224 7.04739 7.20633 8.49199 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.002158 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.460947 B =12968.890596 C =13846.259304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 H 0.071 0.929 4 N -0.714 5.714 5 C 0.539 3.461 6 O -0.585 6.585 7 C -0.206 4.206 8 C -0.136 4.136 9 C -0.158 4.158 10 C -0.092 4.092 11 H 0.111 0.889 12 C -0.110 4.110 13 C 0.087 3.913 14 N -0.616 5.616 15 C 0.544 3.456 16 O -0.568 6.568 17 C -0.099 4.099 18 S -0.197 6.197 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.020 4.020 22 N -0.913 5.913 23 Si 1.140 2.860 24 H -0.266 1.266 25 H -0.262 1.262 26 H -0.280 1.280 27 C 0.110 3.890 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.413 0.587 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.199 4.636 17.110 29.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.089 0.911 4 N -0.365 5.365 5 C 0.327 3.673 6 O -0.465 6.465 7 C -0.227 4.227 8 C -0.173 4.173 9 C -0.195 4.195 10 C -0.112 4.112 11 H 0.129 0.871 12 C -0.148 4.148 13 C -0.034 4.034 14 N -0.350 5.350 15 C 0.332 3.668 16 O -0.447 6.447 17 C -0.250 4.250 18 S 0.030 5.970 19 C -0.759 4.759 20 H 0.094 0.906 21 C -0.223 4.223 22 N -0.548 5.548 23 Si 0.957 3.043 24 H -0.191 1.191 25 H -0.186 1.186 26 H -0.205 1.205 27 C -0.013 4.013 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.161 0.839 33 H 0.110 0.890 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.185 4.533 16.890 28.249 hybrid contribution -1.079 0.445 0.556 1.293 sum -23.265 4.978 17.447 29.503 Atomic orbital electron populations 1.22105 0.93191 1.03230 1.02732 1.20877 0.95261 0.96212 0.82441 0.91065 1.45999 1.66753 1.14681 1.09090 1.20113 0.76162 0.86210 0.84774 1.90674 1.52345 1.17814 1.85704 1.22318 1.06437 1.05436 0.88536 1.23025 0.94770 1.01874 0.97657 1.23007 1.02183 0.97574 0.96781 1.22594 0.92021 1.01911 0.94668 0.87106 1.22714 0.98983 1.01052 0.92059 1.22435 0.85593 1.00166 0.95248 1.48425 1.15363 1.62508 1.08705 1.19745 0.80996 0.76529 0.89557 1.90688 1.43152 1.49873 1.60970 1.23146 1.01115 1.05615 0.95143 1.85077 1.19368 1.83475 1.09123 1.24035 1.08359 1.53099 0.90423 0.90600 1.27875 0.90610 0.91500 1.12331 1.70892 1.30349 1.43102 1.10494 0.82681 0.76887 0.78170 0.66541 1.19134 1.18619 1.20492 1.22315 0.96410 1.01287 0.81262 0.90845 0.93892 0.89495 0.75017 0.83901 0.88975 0.85287 0.86131 0.89537 0.86104 0.89410 0.90520 0.89712 0.87529 0.87093 0.92865 0.91504 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.33 71.98 0.67 -0.93 16 2 C 0.16 2.09 2.09 44.99 0.09 2.19 16 3 H 0.07 1.30 7.54 -2.39 -0.02 1.29 16 4 N -0.71 -9.92 4.77 -442.54 -2.11 -12.03 16 5 C 0.54 10.24 7.58 87.66 0.66 10.91 16 6 O -0.58 -15.97 15.92 -3.03 -0.05 -16.01 16 7 C -0.21 -2.78 6.19 -11.54 -0.07 -2.85 16 8 C -0.14 -1.39 10.24 30.62 0.31 -1.08 16 9 C -0.16 -2.13 10.05 30.62 0.31 -1.82 16 10 C -0.09 -1.13 2.63 -9.41 -0.02 -1.15 16 11 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 12 C -0.11 -1.09 5.58 31.79 0.18 -0.91 16 13 C 0.09 1.48 6.49 86.73 0.56 2.04 16 14 N -0.62 -16.39 3.33 -811.76 -2.70 -19.09 16 15 C 0.54 20.84 7.87 87.66 0.69 21.53 16 16 O -0.57 -27.05 16.12 -3.04 -0.05 -27.10 16 17 C -0.10 -4.01 5.35 71.24 0.38 -3.63 16 18 S -0.20 -10.99 19.60 -56.49 -1.11 -12.09 16 19 C -0.61 -35.33 9.50 67.95 0.65 -34.68 16 20 H 0.08 4.10 7.80 -2.92 -0.02 4.07 16 21 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 22 N -0.91 -58.22 13.67 21.65 0.30 -57.92 16 23 Si 1.14 49.17 29.92 68.60 2.05 51.23 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.11 2.39 6.08 86.85 0.53 2.92 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.09 0.61 7.50 -2.39 -0.02 0.60 16 31 H 0.41 3.92 8.60 -92.70 -0.80 3.12 16 32 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.55 7.67 -2.38 -0.02 1.53 16 37 H 0.12 0.53 8.13 -2.38 -0.02 0.51 16 38 H 0.09 0.83 8.01 -2.39 -0.02 0.81 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 42 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 43 H 0.26 17.30 7.12 -92.71 -0.66 16.64 16 44 H 0.07 1.61 8.04 -2.38 -0.02 1.59 16 45 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -85.46 387.13 2.03 -83.43 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.29 Total: 17.77 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.41 Total: -8.18 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -4.52 Total: -89.04 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.10 Total: -43.11 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.23 kcal Atomic # 16 Polarization: -10.99 SS G_CDS: -1.11 Total: -12.09 kcal Total: -85.46 2.03 -83.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.406 kcal (2) G-P(sol) polarization free energy of solvation -85.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds