Wall clock time and date at job start Tue Mar 31 2020 15:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09012 * 109.47200 * 2 1 4 4 N 1.46496 * 109.47361 * 120.00087 * 2 1 3 5 5 C 1.34786 * 119.99844 * 275.27667 * 4 2 1 6 6 O 1.21280 * 120.00028 * 359.72140 * 5 4 2 7 7 C 1.50700 * 120.00084 * 179.72286 * 5 4 2 8 8 C 1.52999 * 117.49976 * 248.74814 * 7 5 4 9 9 C 1.52995 * 117.50022 * 180.08603 * 7 5 4 10 10 C 1.53000 * 109.47093 * 240.00101 * 2 1 3 11 11 H 1.08997 * 110.88652 * 302.22350 * 10 2 1 12 12 C 1.55156 * 111.00309 * 178.34372 * 10 2 1 13 13 C 1.54322 * 102.94437 * 206.42368 * 12 10 2 14 14 N 1.47019 * 107.27249 * 22.19382 * 13 12 10 15 15 C 1.34775 * 125.65420 * 181.01283 * 14 13 12 16 16 O 1.21278 * 120.00394 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99736 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47130 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00009 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00142 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.99891 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00243 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47270 * 59.99637 * 23 21 19 25 25 H 1.48501 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47083 * 299.99797 * 23 21 19 27 27 C 1.47430 * 108.70095 * 1.06221 * 14 13 12 28 28 H 1.09003 * 109.47132 * 295.01705 * 1 2 3 29 29 H 1.08999 * 109.47151 * 55.01160 * 1 2 3 30 30 H 1.09000 * 109.47008 * 175.01487 * 1 2 3 31 31 H 0.96996 * 120.00054 * 95.00307 * 4 2 1 32 32 H 1.09005 * 115.54784 * 34.41666 * 7 5 4 33 33 H 1.08999 * 117.49631 * 0.02562 * 8 7 5 34 34 H 1.09000 * 117.49632 * 145.01579 * 8 7 5 35 35 H 1.09001 * 117.50016 * 214.98129 * 9 7 5 36 36 H 1.08995 * 117.49689 * 359.97438 * 9 7 5 37 37 H 1.09000 * 110.72261 * 324.78786 * 12 10 2 38 38 H 1.09002 * 110.72145 * 88.06376 * 12 10 2 39 39 H 1.09001 * 109.88632 * 141.61254 * 13 12 10 40 40 H 1.08997 * 109.88258 * 262.62119 * 13 12 10 41 41 H 1.09002 * 109.47397 * 300.00052 * 17 15 14 42 42 H 1.09003 * 109.46843 * 60.00231 * 17 15 14 43 43 H 0.97004 * 119.99969 * 180.02562 * 22 21 19 44 44 H 1.08996 * 110.36542 * 217.03106 * 27 14 13 45 45 H 1.08995 * 110.37085 * 94.70574 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1418 -0.0196 2.3585 6 8 1.8534 1.1572 2.4130 7 6 2.6383 -0.7315 3.5905 8 6 1.6400 -0.9538 4.7284 9 6 2.7545 0.0846 4.8794 10 6 2.0400 -0.7212 -1.2493 11 1 1.6576 -1.7410 -1.2926 12 6 3.5904 -0.7058 -1.3063 13 6 3.8818 -0.8114 -2.8181 14 7 2.6811 -0.3461 -3.5276 15 6 2.5272 -0.3018 -4.8658 16 8 1.4886 0.1029 -5.3437 17 6 3.6457 -0.7551 -5.7683 18 16 3.1369 -0.5762 -7.4961 19 6 4.5891 -1.1610 -8.3048 20 1 5.4368 -1.4892 -7.7217 21 6 4.6434 -1.1998 -9.6911 22 7 3.6100 -0.8002 -10.4018 23 14 6.1827 -1.8204 -10.5485 24 1 6.4454 -3.2236 -10.1397 25 1 5.9876 -1.7621 -12.0194 26 1 7.3386 -0.9694 -10.1678 27 6 1.6738 0.0651 -2.5328 28 1 -0.3633 0.4346 0.9313 29 1 -0.3633 0.5893 -0.8419 30 1 -0.3633 -1.0238 -0.0893 31 1 2.2491 -1.6317 1.1525 32 1 3.3844 -1.5069 3.4168 33 1 0.6241 -0.5856 4.5858 34 1 1.7296 -1.8754 5.3036 35 1 3.5768 -0.1541 5.5539 36 1 2.4723 1.1365 4.8362 37 1 3.9819 0.2278 -0.9024 38 1 4.0045 -1.5616 -0.7731 39 1 4.7327 -0.1812 -3.0766 40 1 4.0938 -1.8472 -3.0832 41 1 4.5305 -0.1456 -5.5847 42 1 3.8760 -1.8008 -5.5642 43 1 3.6479 -0.8277 -11.3707 44 1 0.6738 -0.2058 -2.8712 45 1 1.7360 1.1380 -2.3510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:18 Heat of formation + Delta-G solvation = -53.579391 kcal Electronic energy + Delta-G solvation = -24749.994803 eV Core-core repulsion = 21087.166563 eV Total energy + Delta-G solvation = -3662.828240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62996 -39.75741 -37.86542 -36.58703 -35.38046 -32.43742 -32.27147 -30.67611 -29.55449 -27.79594 -25.62041 -25.41434 -23.66093 -22.90571 -22.30220 -20.86918 -20.26281 -19.34746 -17.93884 -17.66886 -17.09204 -16.59410 -15.81368 -15.62061 -15.18829 -14.84233 -14.81123 -14.66883 -14.23705 -14.13493 -13.84739 -13.50230 -13.12709 -12.99052 -12.94549 -12.60465 -12.51581 -12.47582 -12.03926 -11.83431 -11.72414 -11.42595 -11.16630 -11.11318 -11.04666 -11.04571 -10.99145 -10.96456 -10.77607 -10.18589 -9.83349 -9.52143 -9.39374 -9.06544 -8.53579 -8.24676 -6.51091 -6.21970 -3.92956 2.11706 2.63547 2.92322 3.04690 3.22850 3.25166 3.28622 3.39158 3.59727 4.08646 4.18019 4.20501 4.27138 4.33587 4.39672 4.42544 4.66204 4.87179 4.90737 4.92643 5.07504 5.11245 5.12984 5.15396 5.21445 5.27401 5.39510 5.44798 5.46046 5.51547 5.61264 5.63655 5.65459 5.69338 5.74494 5.85512 5.92279 5.95754 6.12559 6.12735 6.38779 7.11003 7.58427 7.64211 7.86150 8.34378 8.53487 9.22998 10.85378 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033676 B = 0.001967 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.257699 B =14234.207341 C =14831.740930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.093 0.907 4 N -0.720 5.720 5 C 0.544 3.456 6 O -0.539 6.539 7 C -0.197 4.197 8 C -0.153 4.153 9 C -0.148 4.148 10 C -0.111 4.111 11 H 0.092 0.908 12 C -0.124 4.124 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.549 3.451 16 O -0.515 6.515 17 C -0.147 4.147 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.118 3.882 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.401 0.599 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.082 0.918 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 -3.399 30.422 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.111 0.889 4 N -0.371 5.371 5 C 0.330 3.670 6 O -0.416 6.416 7 C -0.218 4.218 8 C -0.191 4.191 9 C -0.185 4.185 10 C -0.131 4.131 11 H 0.110 0.890 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.005 4.005 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.673 -1.901 29.431 29.613 hybrid contribution 2.450 -1.483 -0.085 2.865 sum -0.223 -3.384 29.347 29.542 Atomic orbital electron populations 1.22213 0.94729 1.02494 1.02942 1.20890 0.94323 0.97262 0.82561 0.88929 1.45962 1.67623 1.14102 1.09386 1.19657 0.76958 0.86666 0.83692 1.90715 1.49996 1.15928 1.84934 1.22216 1.05227 1.04922 0.89415 1.22952 0.95697 1.01506 0.98896 1.22967 1.00815 0.98473 0.96280 1.22679 0.96154 1.00565 0.93710 0.88959 1.22679 0.94979 1.03222 0.95275 1.21987 0.88602 1.00211 0.91395 1.48484 1.16414 1.66597 1.04936 1.20031 0.88868 0.77290 0.80081 1.90712 1.29014 1.45410 1.73746 1.23507 0.99431 1.03864 1.02904 1.85403 1.23104 1.85229 0.89639 1.22815 1.01572 1.50071 0.93961 0.90988 1.24990 0.97259 0.94976 0.96330 1.70008 1.29395 1.44160 1.06679 0.86224 0.81827 0.79275 0.78170 1.19948 1.20790 1.19933 1.22067 0.93651 0.98442 0.86363 0.92032 0.91009 0.92213 0.76493 0.85834 0.88249 0.87751 0.87881 0.87362 0.90334 0.90027 0.91202 0.91201 0.89304 0.89320 0.92113 0.89991 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.25 37.16 0.34 -0.95 16 2 C 0.15 1.18 2.09 -67.93 -0.14 1.04 16 3 H 0.09 0.89 7.55 -51.92 -0.39 0.50 16 4 N -0.72 -4.56 4.78 -53.80 -0.26 -4.81 16 5 C 0.54 4.59 7.58 -10.98 -0.08 4.51 16 6 O -0.54 -6.79 15.92 5.56 0.09 -6.70 16 7 C -0.20 -1.11 6.19 -91.77 -0.57 -1.68 16 8 C -0.15 -0.74 10.24 -26.69 -0.27 -1.02 16 9 C -0.15 -0.84 10.05 -26.70 -0.27 -1.11 16 10 C -0.11 -0.85 2.62 -88.47 -0.23 -1.08 16 11 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 12 C -0.12 -0.89 6.13 -24.90 -0.15 -1.04 16 13 C 0.10 1.04 6.49 -3.07 -0.02 1.02 16 14 N -0.63 -8.87 3.33 -170.52 -0.57 -9.44 16 15 C 0.55 10.62 7.87 -10.99 -0.09 10.53 16 16 O -0.51 -12.00 16.12 5.56 0.09 -11.91 16 17 C -0.15 -3.02 5.35 36.01 0.19 -2.82 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.12 1.35 5.62 -2.52 -0.01 1.34 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 1.53 8.60 -40.82 -0.35 1.18 16 32 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 0.81 7.67 -51.93 -0.40 0.41 16 37 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -36.51 388.66 -9.80 -46.31 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.41 Total: -2.08 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.11 Total: -4.25 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -0.09 Total: -39.71 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.51 -9.80 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.269 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds