Wall clock time and date at job start Tue Mar 31 2020 14:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.38818 * 2 1 4 4 C 1.54389 * 110.33644 * 122.22544 * 2 1 3 5 5 N 1.48154 * 104.61471 * 142.74020 * 4 2 1 6 6 C 1.34771 * 127.83692 * 140.39518 * 5 4 2 7 7 O 1.21289 * 119.99574 * 179.97438 * 6 5 4 8 8 C 1.50699 * 120.00469 * 359.97025 * 6 5 4 9 9 C 1.52991 * 117.50341 * 248.75071 * 8 6 5 10 10 C 1.52996 * 117.50238 * 180.08487 * 8 6 5 11 11 C 1.48144 * 104.32110 * 320.41346 * 5 4 2 12 12 C 1.54281 * 110.34387 * 237.76165 * 2 1 3 13 13 H 1.09002 * 110.34302 * 0.02562 * 12 2 1 14 14 C 1.53006 * 110.33853 * 122.15650 * 12 2 1 15 15 N 1.46501 * 109.46453 * 183.52632 * 14 12 2 16 16 C 1.34785 * 119.99326 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99625 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46860 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99915 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00092 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99829 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99885 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00301 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46950 * 90.00388 * 24 22 20 26 26 H 1.48499 * 109.47479 * 210.00142 * 24 22 20 27 27 H 1.48500 * 109.47252 * 330.00482 * 24 22 20 28 28 H 1.08996 * 109.47126 * 182.23275 * 1 2 3 29 29 H 1.08995 * 109.47333 * 302.23933 * 1 2 3 30 30 H 1.09000 * 109.46800 * 62.23733 * 1 2 3 31 31 H 1.09000 * 110.41208 * 261.51871 * 4 2 1 32 32 H 1.08996 * 110.40912 * 23.84298 * 4 2 1 33 33 H 1.09000 * 115.54365 * 34.42099 * 8 6 5 34 34 H 1.09005 * 117.49776 * 359.97438 * 9 8 6 35 35 H 1.09005 * 117.50266 * 145.01477 * 9 8 6 36 36 H 1.09000 * 117.50263 * 214.98259 * 10 8 6 37 37 H 1.08999 * 117.49698 * 359.97438 * 10 8 6 38 38 H 1.08999 * 110.40697 * 280.80114 * 11 5 4 39 39 H 1.08998 * 110.40769 * 158.37404 * 11 5 4 40 40 H 1.09003 * 109.46961 * 303.52247 * 14 12 2 41 41 H 1.09002 * 109.47250 * 63.53000 * 14 12 2 42 42 H 0.96996 * 120.00999 * 359.97438 * 15 14 12 43 43 H 1.08996 * 109.47017 * 300.00057 * 18 16 15 44 44 H 1.09002 * 109.46861 * 60.00037 * 18 16 15 45 45 H 0.97003 * 119.99748 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0666 -0.7720 1.2247 5 7 3.2664 -1.4817 0.7229 6 6 4.4424 -1.6660 1.3548 7 8 5.3366 -2.2749 0.8063 8 6 4.6466 -1.1156 2.7427 9 6 5.6335 0.0420 2.9056 10 6 6.0043 -1.3564 3.4056 11 6 2.8802 -1.9423 -0.6311 12 6 2.0664 -0.7717 -1.2236 13 1 1.2399 -1.1503 -1.8249 14 6 2.9673 0.1313 -2.0687 15 7 3.3975 -0.5927 -3.2674 16 6 4.2036 0.0087 -4.1648 17 8 4.5723 1.1493 -3.9801 18 6 4.6467 -0.7362 -5.3976 19 16 5.7123 0.3320 -6.3975 20 6 6.0730 -0.7594 -7.7329 21 1 5.6579 -1.7565 -7.7427 22 6 6.8907 -0.3378 -8.7722 23 7 7.1598 -1.1531 -9.7701 24 14 7.6081 1.3868 -8.7556 25 1 8.9203 1.3704 -8.0605 26 1 7.7931 1.8595 -10.1511 27 1 6.6813 2.3016 -8.0419 28 1 -0.3633 -1.0268 0.0400 29 1 -0.3634 0.5482 0.8692 30 1 -0.3633 0.4787 -0.9094 31 1 2.3400 -0.0794 2.0207 32 1 1.3226 -1.4845 1.5807 33 1 3.7655 -1.1199 3.3843 34 1 6.1356 0.4053 2.0088 35 1 5.4019 0.7993 3.6546 36 1 6.0165 -1.5187 4.4834 37 1 6.7498 -1.9134 2.8380 38 1 2.2640 -2.8390 -0.5661 39 1 3.7673 -2.1327 -1.2352 40 1 2.4145 1.0238 -2.3621 41 1 3.8416 0.4206 -1.4855 42 1 3.1030 -1.5050 -3.4150 43 1 5.1992 -1.6287 -5.1039 44 1 3.7726 -1.0255 -5.9811 45 1 7.7316 -0.8585 -10.4962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051715162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:15 Heat of formation + Delta-G solvation = -51.290619 kcal Electronic energy + Delta-G solvation = -25120.992226 eV Core-core repulsion = 21458.263235 eV Total energy + Delta-G solvation = -3662.728991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73485 -39.37490 -38.48023 -36.30333 -34.74775 -33.16170 -32.41482 -30.98492 -29.16716 -26.91130 -26.62876 -25.57777 -23.97813 -22.79518 -22.35994 -20.66776 -20.09513 -19.33558 -17.98755 -17.71466 -16.69017 -16.26576 -16.08881 -15.90965 -15.44288 -15.13087 -14.94130 -14.68976 -14.16864 -13.91896 -13.86713 -13.51456 -13.28299 -13.23446 -12.95364 -12.77354 -12.49527 -12.35828 -12.21343 -11.91365 -11.86516 -11.41697 -11.25933 -11.19931 -11.09596 -10.98659 -10.98199 -10.87013 -10.56936 -10.11296 -9.83656 -9.51184 -9.09695 -9.00415 -8.94914 -8.47678 -6.89217 -6.26675 -3.98149 2.19035 2.51870 2.78169 3.00035 3.30922 3.36033 3.48755 3.52441 3.65477 3.94728 4.04927 4.25079 4.34193 4.35668 4.40527 4.50823 4.65080 4.70262 4.76823 4.79441 4.96198 4.98152 5.02767 5.12386 5.20175 5.23833 5.27768 5.32815 5.33734 5.44318 5.49989 5.57266 5.64555 5.67759 5.71745 5.74050 5.78505 5.80535 6.00399 6.04433 6.52121 7.19316 7.60479 7.87365 7.96506 8.44053 8.50494 9.19574 10.82595 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.002565 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.756972 B =10913.602349 C =11842.240593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.105 3.895 5 N -0.621 5.621 6 C 0.563 3.437 7 O -0.534 6.534 8 C -0.192 4.192 9 C -0.152 4.152 10 C -0.148 4.148 11 C 0.105 3.895 12 C -0.112 4.112 13 H 0.097 0.903 14 C 0.132 3.868 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.520 6.520 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 -0.061 28.455 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.355 5.355 6 C 0.352 3.648 7 O -0.410 6.410 8 C -0.213 4.213 9 C -0.189 4.189 10 C -0.185 4.185 11 C -0.018 4.018 12 C -0.132 4.132 13 H 0.115 0.885 14 C 0.008 3.992 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.022 1.465 28.349 31.661 hybrid contribution -0.338 -1.203 -0.521 1.354 sum -14.360 0.262 27.828 31.316 Atomic orbital electron populations 1.21832 0.93384 1.02285 1.02563 1.22097 0.96488 1.00065 0.93248 0.89362 1.22529 0.86800 0.95568 0.96936 1.48826 1.13028 1.56140 1.17487 1.19321 0.80162 0.79108 0.86225 1.90752 1.41216 1.41575 1.67426 1.22132 0.96690 1.06987 0.95539 1.22979 1.00549 0.91484 1.03885 1.22990 0.95828 0.99005 1.00679 1.22449 0.99729 0.96147 0.83472 1.22498 0.98331 0.95891 0.96446 0.88457 1.21306 0.97820 0.94534 0.85566 1.45967 1.52375 1.17898 1.22968 1.20278 0.77428 0.86871 0.83700 1.90697 1.54557 1.17868 1.76295 1.23279 1.04158 1.03253 0.96776 1.84779 1.61697 1.21703 1.23415 1.22319 1.36147 1.01951 1.06386 0.89381 1.24717 0.94738 0.97839 0.94058 1.69945 1.36171 1.35878 1.09760 0.86729 0.81518 0.85031 0.78537 1.19203 1.19957 1.15930 0.92205 0.92116 0.91777 0.89976 0.90700 0.86012 0.88022 0.87670 0.87834 0.87286 0.90737 0.89237 0.91232 0.91631 0.76715 0.88479 0.88438 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 8.92 37.16 0.33 -0.22 16 2 C -0.10 -0.54 3.31 -89.22 -0.30 -0.83 16 3 H 0.09 0.53 7.71 -51.93 -0.40 0.13 16 4 C 0.10 0.56 6.37 -2.40 -0.02 0.55 16 5 N -0.62 -5.58 3.32 -169.30 -0.56 -6.14 16 6 C 0.56 6.44 7.70 -10.99 -0.08 6.36 16 7 O -0.53 -8.52 16.52 5.55 0.09 -8.43 16 8 C -0.19 -1.53 5.30 -91.78 -0.49 -2.01 16 9 C -0.15 -1.11 10.24 -26.70 -0.27 -1.38 16 10 C -0.15 -1.14 10.05 -26.70 -0.27 -1.41 16 11 C 0.10 0.90 6.44 -2.41 -0.02 0.88 16 12 C -0.11 -0.79 2.76 -89.22 -0.25 -1.04 16 13 H 0.10 0.55 7.71 -51.93 -0.40 0.15 16 14 C 0.13 1.44 4.80 -4.04 -0.02 1.42 16 15 N -0.74 -9.44 5.12 -60.28 -0.31 -9.75 16 16 C 0.53 9.68 7.85 -10.98 -0.09 9.59 16 17 O -0.52 -11.51 15.86 5.55 0.09 -11.42 16 18 C -0.12 -2.46 6.16 36.01 0.22 -2.24 16 19 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 20 C -0.52 -15.25 10.04 30.94 0.31 -14.94 16 21 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.95 13.97 55.49 0.78 -26.17 16 24 Si 0.86 22.15 27.74 -169.99 -4.71 17.43 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 28 H 0.06 0.20 8.10 -51.93 -0.42 -0.22 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.35 7.21 -51.93 -0.37 -0.03 16 32 H 0.07 0.31 7.83 -51.93 -0.41 -0.10 16 33 H 0.12 0.66 7.65 -51.93 -0.40 0.26 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.11 1.06 7.67 -51.93 -0.40 0.66 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.01 7.20 -51.93 -0.37 0.63 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 3.95 8.30 -40.82 -0.34 3.61 16 43 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 44 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -37.55 384.58 -9.16 -46.71 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.31 Total: 0.20 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.02 Total: -2.54 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.09 Total: -42.07 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.18 Total: -19.85 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.55 -9.16 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051715162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.580 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds