Wall clock time and date at job start Tue Mar 31 2020 14:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.38949 * 2 1 4 4 C 1.54389 * 110.34346 * 237.76487 * 2 1 3 5 5 N 1.48146 * 104.71947 * 217.20744 * 4 2 1 6 6 C 1.34781 * 127.83592 * 219.64451 * 5 4 2 7 7 O 1.21280 * 120.00372 * 180.02562 * 6 5 4 8 8 C 1.50707 * 119.99767 * 0.02562 * 6 5 4 9 9 C 1.52999 * 117.49928 * 248.74492 * 8 6 5 10 10 C 1.53002 * 117.49387 * 180.08838 * 8 6 5 11 11 C 1.48427 * 104.18376 * 39.57151 * 5 4 2 12 12 C 1.54289 * 110.34095 * 122.22734 * 2 1 3 13 13 H 1.08996 * 110.34304 * 237.73716 * 12 2 1 14 14 C 1.53002 * 110.34289 * 0.02562 * 12 2 1 15 15 N 1.46499 * 109.46964 * 185.00094 * 14 12 2 16 16 C 1.34774 * 119.99728 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00003 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00018 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47378 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99962 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00284 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99874 * 180.02562 * 20 19 18 23 23 N 1.31637 * 120.00121 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47051 * 59.99693 * 24 22 20 26 26 H 1.48506 * 109.47036 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47006 * 299.99420 * 24 22 20 28 28 H 1.09001 * 109.47260 * 180.77994 * 1 2 3 29 29 H 1.09000 * 109.47306 * 300.78130 * 1 2 3 30 30 H 1.09004 * 109.46825 * 60.77982 * 1 2 3 31 31 H 1.09002 * 110.40709 * 336.05043 * 4 2 1 32 32 H 1.09002 * 110.40588 * 98.36404 * 4 2 1 33 33 H 1.08993 * 115.55147 * 34.41990 * 8 6 5 34 34 H 1.09000 * 117.49725 * 0.02562 * 9 8 6 35 35 H 1.08993 * 117.49768 * 145.02332 * 9 8 6 36 36 H 1.09005 * 117.49580 * 214.97814 * 10 8 6 37 37 H 1.09000 * 117.50411 * 359.97438 * 10 8 6 38 38 H 1.09004 * 110.39413 * 201.64938 * 11 5 4 39 39 H 1.09006 * 110.49084 * 79.28969 * 11 5 4 40 40 H 1.09003 * 109.46396 * 304.99705 * 14 12 2 41 41 H 1.09001 * 109.46979 * 64.99395 * 14 12 2 42 42 H 0.97000 * 120.00123 * 359.97438 * 15 14 12 43 43 H 1.09002 * 109.47566 * 300.00068 * 18 16 15 44 44 H 1.09001 * 109.47389 * 60.00107 * 18 16 15 45 45 H 0.96998 * 120.00124 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7721 -1.2245 5 7 3.2675 -1.4817 -0.7253 6 6 4.4428 -1.6647 -1.3591 7 8 5.3382 -2.2736 -0.8128 8 6 4.6445 -1.1126 -2.7469 9 6 4.7622 -2.1157 -3.8961 10 6 6.0000 -1.3554 -3.4136 11 6 2.8801 -1.9422 0.6315 12 6 2.0663 -0.7715 1.2238 13 1 2.7095 -0.1288 1.8248 14 6 0.9060 -1.3039 2.0672 15 7 1.4327 -1.9282 3.2834 16 6 0.5877 -2.4699 4.1829 17 8 -0.6086 -2.4401 3.9857 18 6 1.1294 -3.1127 5.4336 19 16 -0.2431 -3.7424 6.4314 20 6 0.6517 -4.4197 7.7898 21 1 1.7299 -4.3606 7.8095 22 6 -0.0291 -5.0301 8.8341 23 7 -1.3432 -5.1026 8.8098 24 14 0.9196 -5.7489 10.2739 25 1 1.7034 -4.6751 10.9356 26 1 -0.0326 -6.3388 11.2490 27 1 1.8419 -6.8036 9.7819 28 1 -0.3634 -1.0276 0.0140 29 1 -0.3634 0.5259 0.8829 30 1 -0.3633 0.5017 -0.8969 31 1 1.3234 -1.4861 -1.5793 32 1 2.3381 -0.0797 -2.0213 33 1 4.1440 -0.1667 -2.9538 34 1 4.6933 -3.1750 -3.6485 35 1 4.3395 -1.8296 -4.8591 36 1 6.3911 -0.5693 -4.0596 37 1 6.7461 -1.9140 -2.8485 38 1 3.7671 -2.1325 1.2358 39 1 2.2644 -2.8396 0.5685 40 1 0.2460 -0.4799 2.3383 41 1 0.3477 -2.0425 1.4920 42 1 2.3894 -1.9518 3.4412 43 1 1.7889 -3.9370 5.1622 44 1 1.6884 -2.3744 6.0087 45 1 -1.8190 -5.5289 9.5398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051715163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:18 Heat of formation + Delta-G solvation = -47.823876 kcal Electronic energy + Delta-G solvation = -24765.132611 eV Core-core repulsion = 21102.553949 eV Total energy + Delta-G solvation = -3662.578662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76348 -39.42109 -38.47472 -36.39456 -34.79370 -33.15932 -32.41863 -30.74605 -29.13582 -27.22202 -25.99484 -25.44926 -24.19435 -22.92493 -22.76767 -20.48153 -19.65056 -19.32111 -18.01198 -17.74070 -16.69298 -16.25324 -16.15199 -15.86942 -15.50665 -15.10871 -14.83485 -14.79342 -14.33778 -14.06932 -13.73445 -13.37440 -13.28125 -13.06404 -12.84447 -12.55384 -12.51609 -12.37369 -12.30059 -11.99388 -11.83647 -11.25143 -11.17535 -11.03995 -11.03747 -11.02687 -10.94710 -10.82728 -10.74949 -10.18487 -9.81739 -9.41518 -9.14332 -9.05527 -8.89245 -8.23730 -6.49323 -6.20773 -3.91379 2.12239 2.46748 3.02577 3.09265 3.24573 3.28270 3.31766 3.39982 3.67776 3.95341 4.04860 4.21473 4.26352 4.30826 4.38450 4.42686 4.57572 4.67265 4.90210 4.95049 4.99663 5.06885 5.13450 5.14271 5.17394 5.24560 5.33583 5.39238 5.41813 5.44483 5.48592 5.61304 5.63195 5.67153 5.77829 5.82899 5.84660 5.90942 6.02269 6.15329 6.59362 7.15474 7.60277 7.68114 7.80096 8.36003 8.59969 9.24495 10.86558 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.002107 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.185379 B =13286.645020 C =14333.094372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.104 3.896 5 N -0.621 5.621 6 C 0.563 3.437 7 O -0.539 6.539 8 C -0.192 4.192 9 C -0.152 4.152 10 C -0.148 4.148 11 C 0.107 3.893 12 C -0.112 4.112 13 H 0.090 0.910 14 C 0.129 3.871 15 N -0.742 5.742 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.065 12.456 -26.267 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.353 3.647 7 O -0.416 6.416 8 C -0.213 4.213 9 C -0.189 4.189 10 C -0.185 4.185 11 C -0.015 4.015 12 C -0.132 4.132 13 H 0.108 0.892 14 C 0.005 3.995 15 N -0.397 5.397 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.475 12.087 -26.272 30.136 hybrid contribution 2.339 -0.371 1.264 2.685 sum 10.814 11.716 -25.008 29.659 Atomic orbital electron populations 1.21965 0.93350 1.03100 1.02609 1.22061 0.96837 0.99463 0.93250 0.89633 1.22566 0.86809 0.95689 0.96819 1.48920 1.12901 1.55996 1.17648 1.19286 0.80155 0.79097 0.86190 1.90725 1.41291 1.42088 1.67518 1.22148 1.05152 1.02312 0.91722 1.22961 1.01848 0.97601 0.96512 1.22989 0.90633 1.03028 1.01859 1.22524 0.99442 0.96657 0.82865 1.22398 0.97119 0.97092 0.96549 0.89212 1.21512 0.94938 0.97885 0.85168 1.46076 1.10217 1.61433 1.21936 1.20291 0.86556 0.77374 0.83899 1.90699 1.15237 1.56599 1.76657 1.23540 1.06480 1.03065 0.97423 1.85367 1.05439 1.73202 1.19343 1.22830 0.95069 1.43662 1.06847 0.90970 1.24994 0.95070 0.95461 0.98065 1.70009 1.06392 1.41499 1.32416 0.86225 0.79290 0.79224 0.80767 1.19942 1.20816 1.19930 0.91498 0.91294 0.92191 0.90422 0.90113 0.85912 0.88181 0.87668 0.87801 0.87331 0.89667 0.90362 0.90650 0.91068 0.76874 0.89204 0.89219 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 7.91 37.15 0.29 -0.59 16 2 C -0.10 -0.56 3.66 -89.22 -0.33 -0.88 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.10 0.60 6.45 -2.41 -0.02 0.58 16 5 N -0.62 -5.44 3.33 -169.06 -0.56 -6.00 16 6 C 0.56 5.92 7.70 -10.98 -0.08 5.83 16 7 O -0.54 -7.85 16.54 5.56 0.09 -7.76 16 8 C -0.19 -1.35 5.58 -91.77 -0.51 -1.86 16 9 C -0.15 -0.89 10.24 -26.69 -0.27 -1.16 16 10 C -0.15 -0.96 10.05 -26.69 -0.27 -1.23 16 11 C 0.11 0.97 6.42 -2.25 -0.01 0.96 16 12 C -0.11 -0.85 3.10 -89.21 -0.28 -1.13 16 13 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 14 C 0.13 1.33 3.80 -4.04 -0.02 1.31 16 15 N -0.74 -9.41 5.43 -60.29 -0.33 -9.73 16 16 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 17 O -0.52 -11.47 15.86 5.56 0.09 -11.38 16 18 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.44 6.75 -51.93 -0.35 0.09 16 29 H 0.07 0.45 6.86 -51.93 -0.36 0.09 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.42 7.86 -51.93 -0.41 0.01 16 32 H 0.08 0.32 6.78 -51.93 -0.35 -0.03 16 33 H 0.12 0.59 7.07 -51.93 -0.37 0.22 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 38 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 39 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 40 H 0.08 0.82 6.57 -51.93 -0.34 0.48 16 41 H 0.07 0.79 6.86 -51.93 -0.36 0.43 16 42 H 0.40 4.06 8.41 -40.82 -0.34 3.72 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -36.66 381.47 -9.63 -46.29 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.01 Total: 0.12 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.16 Total: -4.45 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.16 Total: -41.23 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.66 -9.63 -46.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051715163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.534 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds