Wall clock time and date at job start Tue Mar 31 2020 14:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.28920 * 2 1 4 4 C 1.53998 * 110.33466 * 237.86242 * 2 1 3 5 5 N 1.47481 * 107.08415 * 242.31488 * 4 2 1 6 6 C 1.34784 * 127.03335 * 154.51448 * 5 4 2 7 7 O 1.21283 * 119.99667 * 180.02562 * 6 5 4 8 8 C 1.50693 * 119.99987 * 0.02562 * 6 5 4 9 9 C 1.53001 * 117.49719 * 248.62244 * 8 6 5 10 10 C 1.53001 * 117.49897 * 180.02562 * 8 6 5 11 11 C 1.48118 * 105.93310 * 334.77284 * 5 4 2 12 12 C 1.54595 * 103.42024 * 39.02796 * 11 5 4 13 13 H 1.09001 * 110.73094 * 81.24281 * 12 11 5 14 14 C 1.53004 * 110.83003 * 204.44752 * 12 11 5 15 15 N 1.46499 * 109.47166 * 288.56011 * 14 12 11 16 16 C 1.34773 * 119.99986 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00260 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99985 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47048 * 179.97438 * 18 16 15 20 20 C 1.76208 * 99.99982 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99855 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00114 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99762 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00141 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47389 * 59.99463 * 24 22 20 26 26 H 1.48498 * 109.47663 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.46929 * 299.99600 * 24 22 20 28 28 H 1.09001 * 109.46870 * 180.68139 * 1 2 3 29 29 H 1.08998 * 109.47598 * 300.68616 * 1 2 3 30 30 H 1.09008 * 109.46772 * 60.68999 * 1 2 3 31 31 H 1.08997 * 109.92001 * 122.94548 * 4 2 1 32 32 H 1.09007 * 110.07264 * 1.76114 * 4 2 1 33 33 H 1.09003 * 115.55152 * 34.32871 * 8 6 5 34 34 H 1.09005 * 117.50172 * 359.97438 * 9 8 6 35 35 H 1.08997 * 117.50066 * 145.02182 * 9 8 6 36 36 H 1.08996 * 117.49946 * 214.97679 * 10 8 6 37 37 H 1.08998 * 117.49754 * 359.97438 * 10 8 6 38 38 H 1.09000 * 110.66016 * 157.51335 * 11 5 4 39 39 H 1.09001 * 110.66208 * 280.62611 * 11 5 4 40 40 H 1.08998 * 109.47520 * 48.56280 * 14 12 11 41 41 H 1.09001 * 109.46570 * 168.55888 * 14 12 11 42 42 H 0.97000 * 119.99605 * 0.02562 * 15 14 12 43 43 H 1.09006 * 109.46789 * 299.99192 * 18 16 15 44 44 H 1.08997 * 109.47289 * 59.99589 * 18 16 15 45 45 H 0.96999 * 119.99551 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7681 -1.2227 5 7 2.8298 -1.9202 -0.7100 6 6 3.0647 -3.0860 -1.3445 7 8 3.7141 -3.9530 -0.7992 8 6 2.5203 -3.3119 -2.7314 9 6 1.4092 -4.3512 -2.8935 10 6 2.8207 -4.6559 -3.3980 11 6 3.2816 -1.5367 0.6475 12 6 2.0692 -0.7719 1.2264 13 1 1.3198 -1.4669 1.6052 14 6 2.5112 0.1970 2.3250 15 7 2.9041 -0.5610 3.5155 16 6 3.3313 0.0878 4.6169 17 8 3.3909 1.2992 4.6222 18 6 3.7360 -0.6919 5.8413 19 16 4.2587 0.4542 7.1409 20 6 4.6634 -0.6928 8.4159 21 1 4.5507 -1.7530 8.2441 22 6 5.1262 -0.2336 9.6413 23 7 5.2631 1.0587 9.8508 24 14 5.5559 -1.4496 10.9925 25 1 6.6329 -2.3557 10.5190 26 1 6.0234 -0.7110 12.1930 27 1 4.3535 -2.2490 11.3398 28 1 -0.3633 -1.0276 0.0122 29 1 -0.3634 0.5244 0.8837 30 1 -0.3633 0.5031 -0.8962 31 1 2.7167 -0.1222 -1.8111 32 1 1.2355 -1.1173 -1.8377 33 1 2.4822 -2.4300 -3.3709 34 1 1.0723 -4.8719 -1.9971 35 1 0.6398 -4.1532 -3.6398 36 1 2.9802 -4.6584 -4.4762 37 1 3.4124 -5.3765 -2.8335 38 1 3.4981 -2.4221 1.2452 39 1 4.1541 -0.8856 0.5928 40 1 3.3589 0.7843 1.9721 41 1 1.6860 0.8638 2.5748 42 1 2.8568 -1.5298 3.5111 43 1 2.8886 -1.2798 6.1942 44 1 4.5616 -1.3582 5.5913 45 1 5.5868 1.3795 10.7070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051715164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:20 Heat of formation + Delta-G solvation = -53.846350 kcal Electronic energy + Delta-G solvation = -24701.264723 eV Core-core repulsion = 21038.424907 eV Total energy + Delta-G solvation = -3662.839816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74506 -39.35199 -38.46629 -36.39420 -34.78045 -33.12489 -32.41711 -31.01171 -29.11577 -27.01478 -26.43593 -25.45023 -23.88326 -22.88383 -22.23529 -20.80723 -20.18108 -19.30697 -17.98810 -17.70503 -16.82515 -16.21931 -16.05230 -15.65290 -15.50552 -15.09051 -14.79182 -14.60256 -14.35231 -14.05417 -13.87122 -13.57942 -13.18765 -13.15756 -12.96157 -12.74138 -12.56831 -12.36255 -12.02427 -11.92466 -11.81434 -11.42345 -11.17296 -11.09708 -11.06332 -11.03399 -11.02486 -10.95458 -10.75224 -10.18150 -9.81546 -9.41690 -9.08746 -9.05327 -8.91423 -8.23457 -6.49072 -6.20523 -3.91114 2.11391 2.48818 3.01965 3.09141 3.24799 3.28417 3.31746 3.40655 3.66594 3.95794 4.01346 4.21732 4.27535 4.30161 4.36076 4.42608 4.64974 4.66235 4.83064 4.92209 5.02547 5.06632 5.12530 5.14548 5.17672 5.24551 5.25655 5.38658 5.44798 5.47093 5.51011 5.56870 5.63127 5.66578 5.68319 5.78607 5.83120 5.90565 6.00672 6.15528 6.57731 7.14035 7.60549 7.67625 7.80242 8.36299 8.59649 9.24749 10.86839 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.002110 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.989016 B =13265.427588 C =14292.924587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.093 0.907 4 C 0.105 3.895 5 N -0.619 5.619 6 C 0.561 3.439 7 O -0.538 6.538 8 C -0.192 4.192 9 C -0.152 4.152 10 C -0.148 4.148 11 C 0.107 3.893 12 C -0.110 4.110 13 H 0.092 0.908 14 C 0.133 3.867 15 N -0.740 5.740 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 -6.795 -28.867 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.350 3.650 7 O -0.415 6.415 8 C -0.213 4.213 9 C -0.189 4.189 10 C -0.185 4.185 11 C -0.015 4.015 12 C -0.130 4.130 13 H 0.110 0.890 14 C 0.009 3.991 15 N -0.395 5.395 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.334 -5.165 -28.497 30.749 hybrid contribution 0.168 -2.444 0.812 2.581 sum -10.167 -7.609 -27.684 30.458 Atomic orbital electron populations 1.21863 0.93554 1.02229 1.02518 1.22069 0.96838 0.99877 0.92969 0.88863 1.22244 0.95694 0.87277 0.96639 1.48668 1.53875 1.14998 1.17716 1.19311 0.79415 0.80039 0.86191 1.90729 1.40276 1.42826 1.67680 1.22154 1.07210 0.96296 0.95682 1.22938 0.92045 1.00177 1.03755 1.22970 0.98541 0.96263 1.00731 1.22531 0.96527 0.99825 0.82600 1.22583 0.97846 0.97695 0.94878 0.89007 1.21239 1.00483 0.93515 0.83898 1.46021 1.69638 1.10237 1.13630 1.20302 0.76016 0.88286 0.83507 1.90703 1.51900 1.13944 1.82634 1.23537 1.04309 1.04390 0.98244 1.85372 1.84432 1.08477 1.05078 1.22831 1.51323 0.94363 0.99879 0.90968 1.24993 0.94905 0.95781 0.97923 1.70010 1.43248 1.12588 1.24469 0.86222 0.78891 0.80303 0.80072 1.19930 1.20820 1.19940 0.92416 0.91733 0.92131 0.91201 0.90300 0.85944 0.88205 0.87699 0.87807 0.87322 0.89496 0.90369 0.91207 0.90984 0.76790 0.89217 0.89175 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.90 37.16 0.33 -0.38 16 2 C -0.10 -0.55 3.17 -89.25 -0.28 -0.84 16 3 H 0.09 0.49 7.85 -51.93 -0.41 0.09 16 4 C 0.10 0.58 6.24 -2.98 -0.02 0.56 16 5 N -0.62 -5.33 3.29 -169.98 -0.56 -5.89 16 6 C 0.56 5.85 7.68 -10.99 -0.08 5.77 16 7 O -0.54 -7.82 16.47 5.56 0.09 -7.73 16 8 C -0.19 -1.34 5.32 -91.77 -0.49 -1.83 16 9 C -0.15 -0.86 10.23 -26.75 -0.27 -1.14 16 10 C -0.15 -0.96 10.04 -26.75 -0.27 -1.23 16 11 C 0.11 0.96 6.44 -2.31 -0.01 0.95 16 12 C -0.11 -0.83 2.61 -88.93 -0.23 -1.06 16 13 H 0.09 0.70 7.86 -51.93 -0.41 0.29 16 14 C 0.13 1.38 4.99 -4.04 -0.02 1.36 16 15 N -0.74 -9.44 5.47 -60.29 -0.33 -9.77 16 16 C 0.53 9.77 7.85 -10.99 -0.09 9.68 16 17 O -0.52 -11.56 15.86 5.55 0.09 -11.47 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.34 7.23 -51.93 -0.38 -0.04 16 33 H 0.12 0.60 7.85 -51.93 -0.41 0.19 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 38 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 39 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.07 0.77 7.99 -51.93 -0.41 0.36 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -36.72 388.61 -9.72 -46.44 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.35 Total: -0.49 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.02 Total: -4.10 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.16 Total: -41.21 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.72 -9.72 -46.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051715164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.404 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds