Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.79876 * 2 1 4 4 C 1.55106 * 110.72599 * 236.60098 * 2 1 3 5 5 N 1.48111 * 103.31820 * 278.97764 * 4 2 1 6 6 C 1.34779 * 127.03413 * 140.79584 * 5 4 2 7 7 O 1.21278 * 119.99765 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00168 * 359.96291 * 6 5 4 9 9 S 1.80994 * 109.47161 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99814 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00140 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99980 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99892 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00187 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47405 * 59.99705 * 14 12 10 16 16 H 1.48501 * 109.47262 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47142 * 300.00171 * 14 12 10 18 18 C 1.47485 * 105.93128 * 320.76674 * 5 4 2 19 19 C 1.54004 * 107.08582 * 25.44494 * 18 5 4 20 20 H 1.09002 * 110.32235 * 239.70331 * 19 18 5 21 21 C 1.52997 * 110.32731 * 117.58901 * 19 18 5 22 22 N 1.46505 * 109.47212 * 67.83405 * 21 19 18 23 23 C 1.34771 * 119.99622 * 179.97438 * 22 21 19 24 24 O 1.21280 * 120.00597 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.99622 * 179.97438 * 23 22 21 26 26 C 1.52998 * 117.50005 * 248.62422 * 25 23 22 27 27 C 1.52999 * 117.49784 * 180.02562 * 25 23 22 28 28 H 1.09001 * 109.47245 * 296.70786 * 1 2 3 29 29 H 1.09003 * 109.47113 * 56.71075 * 1 2 3 30 30 H 1.08994 * 109.46836 * 176.71398 * 1 2 3 31 31 H 1.09003 * 110.58711 * 160.53659 * 4 2 1 32 32 H 1.08996 * 110.82154 * 37.53365 * 4 2 1 33 33 H 1.09005 * 109.46962 * 300.00404 * 8 6 5 34 34 H 1.09002 * 109.47241 * 59.99513 * 8 6 5 35 35 H 0.96998 * 119.99941 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.91044 * 266.08508 * 18 5 4 37 37 H 1.08998 * 109.91378 * 144.80933 * 18 5 4 38 38 H 1.09002 * 109.47153 * 307.83397 * 21 19 18 39 39 H 1.09001 * 109.46832 * 187.83588 * 21 19 18 40 40 H 0.96996 * 119.99606 * 0.02562 * 22 21 19 41 41 H 1.09002 * 115.55280 * 34.33607 * 25 23 22 42 42 H 1.09001 * 117.50063 * 359.97438 * 26 25 23 43 43 H 1.09006 * 117.50130 * 145.02252 * 26 25 23 44 44 H 1.09002 * 117.50081 * 214.98017 * 27 25 23 45 45 H 1.08997 * 117.50069 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0789 -0.7986 -1.2111 5 7 1.9893 -2.2065 -0.7603 6 6 1.6271 -3.2740 -1.4992 7 8 1.5980 -4.3774 -0.9968 8 6 1.2581 -3.0963 -2.9494 9 16 0.8228 -4.7020 -3.6623 10 6 0.4453 -4.2120 -5.3122 11 1 0.5231 -3.1735 -5.5983 12 6 0.0479 -5.1608 -6.2442 13 7 -0.0464 -6.4266 -5.8956 14 14 -0.3516 -4.6415 -7.9935 15 1 0.8450 -4.0132 -8.6089 16 1 -0.7468 -5.8337 -8.7857 17 1 -1.4700 -3.6647 -7.9767 18 6 2.3783 -2.2017 0.6623 19 6 2.0775 -0.7936 1.2088 20 1 2.9900 -0.3303 1.5840 21 6 1.0252 -0.8672 2.3170 22 7 1.5918 -1.5480 3.4840 23 6 0.8415 -1.7284 4.5889 24 8 -0.3028 -1.3276 4.6171 25 6 1.4241 -2.4292 5.7891 26 6 0.8681 -3.8109 6.1393 27 6 0.5218 -2.6037 7.0123 28 1 -0.3634 0.4619 0.9180 29 1 -0.3633 0.5641 -0.8591 30 1 -0.3633 -1.0259 -0.0589 31 1 3.1144 -0.5246 -1.4133 32 1 1.4605 -0.6372 -2.0940 33 1 0.4062 -2.4207 -3.0274 34 1 2.1056 -2.6764 -3.4912 35 1 -0.3245 -7.0895 -6.5468 36 1 3.4426 -2.4171 0.7569 37 1 1.7966 -2.9440 1.2088 38 1 0.1580 -1.4217 1.9584 39 1 0.7212 0.1415 2.5969 40 1 2.5071 -1.8682 3.4616 41 1 2.4850 -2.2534 5.9671 42 1 0.0806 -4.2129 5.5018 43 1 1.5633 -4.5445 6.5476 44 1 0.9889 -2.5427 7.9952 45 1 -0.4934 -2.2120 6.9488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052044862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = -50.029456 kcal Electronic energy + Delta-G solvation = -25133.639390 eV Core-core repulsion = 21470.965087 eV Total energy + Delta-G solvation = -3662.674303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57941 -39.81834 -37.88529 -36.48954 -34.97451 -32.76418 -32.43537 -30.73149 -29.19430 -26.91139 -26.24455 -25.46976 -24.04429 -22.77057 -22.49564 -20.62690 -19.54562 -19.36626 -17.85591 -17.57117 -16.84488 -16.52895 -16.33136 -15.61937 -15.07131 -15.00933 -14.80939 -14.55796 -14.40047 -14.00655 -13.69383 -13.56240 -13.08096 -12.90877 -12.78055 -12.66700 -12.50656 -12.19670 -11.99560 -11.89986 -11.78535 -11.21023 -11.06225 -11.04557 -11.00361 -10.97028 -10.90814 -10.82707 -10.77060 -10.10764 -9.83378 -9.43987 -9.35067 -9.06765 -8.58598 -8.25023 -6.51500 -6.22241 -3.93235 2.22870 2.79550 2.87422 3.03584 3.22850 3.24983 3.28545 3.52299 3.59083 4.12746 4.19672 4.21098 4.34802 4.37194 4.46696 4.53079 4.75378 4.89336 4.93817 4.98267 5.03115 5.12757 5.21369 5.26471 5.34989 5.36066 5.44327 5.47973 5.53911 5.59631 5.60579 5.69548 5.74147 5.77745 5.80388 5.83559 5.88446 6.07587 6.11893 6.16408 6.36853 7.18523 7.58251 7.66231 7.95074 8.34134 8.53226 9.22757 10.85148 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002383 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.726896 B =11745.303981 C =12492.934056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 H 0.092 0.908 4 C 0.103 3.897 5 N -0.626 5.626 6 C 0.552 3.448 7 O -0.515 6.515 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.109 3.891 19 C -0.111 4.111 20 H 0.091 0.909 21 C 0.127 3.873 22 N -0.727 5.727 23 C 0.542 3.458 24 O -0.540 6.540 25 C -0.197 4.197 26 C -0.152 4.152 27 C -0.149 4.149 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.269 0.731 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.401 0.599 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.014 14.867 20.923 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.021 4.021 5 N -0.363 5.363 6 C 0.341 3.659 7 O -0.389 6.389 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.014 4.014 19 C -0.131 4.131 20 H 0.110 0.890 21 C 0.004 3.996 22 N -0.379 5.379 23 C 0.329 3.671 24 O -0.417 6.417 25 C -0.218 4.218 26 C -0.189 4.189 27 C -0.186 4.186 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.059 13.218 21.541 25.989 hybrid contribution 0.435 1.538 -1.808 2.413 sum 6.493 14.756 19.733 25.481 Atomic orbital electron populations 1.21894 0.93893 1.02872 1.02242 1.22272 0.96890 0.98877 0.93396 0.88982 1.22624 1.01169 0.80702 0.97555 1.48767 1.69313 1.07544 1.10722 1.20020 0.75599 0.82649 0.87666 1.90713 1.51547 1.23961 1.72701 1.23500 1.04178 1.08108 0.93885 1.85412 1.87467 1.01723 1.08766 1.22811 1.53229 0.96679 0.95649 0.90983 1.24994 0.94831 0.94489 0.99264 1.70006 1.44230 1.00744 1.35282 0.86222 0.78893 0.78114 0.82261 1.19936 1.20799 1.19919 1.22010 1.00133 0.96420 0.82879 1.22409 0.99019 0.96372 0.95275 0.89025 1.21582 0.96322 0.97756 0.83983 1.45968 1.16908 1.60420 1.14567 1.19666 0.85570 0.78679 0.83204 1.90710 1.17993 1.50329 1.82693 1.22198 1.00563 1.02498 0.96590 1.22962 1.03242 0.89800 1.02913 1.22947 1.00952 1.01083 0.93615 0.91914 0.92004 0.91922 0.90877 0.89492 0.89294 0.89321 0.92109 0.91726 0.90324 0.90562 0.90937 0.76433 0.85862 0.88055 0.87636 0.87924 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.01 37.16 0.30 -1.06 16 2 C -0.09 -0.72 3.61 -88.65 -0.32 -1.04 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.10 1.01 6.40 -2.04 -0.01 1.00 16 5 N -0.63 -8.63 3.20 -169.66 -0.54 -9.17 16 6 C 0.55 10.57 7.91 -10.99 -0.09 10.48 16 7 O -0.52 -11.97 16.20 5.56 0.09 -11.88 16 8 C -0.15 -2.98 5.08 36.00 0.18 -2.80 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 14 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.11 1.18 6.37 -2.98 -0.02 1.17 16 19 C -0.11 -0.83 2.97 -89.25 -0.27 -1.10 16 20 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 21 C 0.13 1.12 3.56 -4.04 -0.01 1.11 16 22 N -0.73 -6.00 5.33 -60.29 -0.32 -6.33 16 23 C 0.54 5.68 7.61 -10.99 -0.08 5.60 16 24 O -0.54 -7.87 16.26 5.56 0.09 -7.78 16 25 C -0.20 -1.48 6.19 -91.77 -0.57 -2.05 16 26 C -0.15 -1.09 10.23 -26.76 -0.27 -1.36 16 27 C -0.15 -1.08 10.04 -26.76 -0.27 -1.35 16 28 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.72 7.63 -51.93 -0.40 0.33 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.88 7.15 -51.93 -0.37 0.51 16 33 H 0.09 1.69 7.91 -51.91 -0.41 1.28 16 34 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.01 7.52 -51.93 -0.39 0.62 16 38 H 0.08 0.87 6.95 -51.93 -0.36 0.51 16 39 H 0.07 0.64 7.47 -51.93 -0.39 0.25 16 40 H 0.40 2.28 8.36 -40.82 -0.34 1.94 16 41 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.96 7.67 -51.93 -0.40 0.57 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -36.87 383.46 -9.81 -46.69 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.17 Total: 0.02 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.23 Total: -4.35 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.13 Total: -40.97 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.18 Total: -19.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.87 -9.81 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052044862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.342 kcal (2) G-P(sol) polarization free energy of solvation -36.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds