Wall clock time and date at job start Tue Mar 31 2020 14:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34777 * 125.64528 * 178.90269 * 5 4 2 7 7 O 1.21487 * 120.00459 * 0.02562 * 6 5 4 8 8 C 1.48352 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.40162 * 119.20270 * 179.73709 * 8 6 5 10 10 C 1.36620 * 119.70773 * 179.72138 * 9 8 6 11 11 C 1.40600 * 118.20758 * 0.53183 * 10 9 8 12 12 C 1.40728 * 121.36994 * 179.70133 * 11 10 9 13 13 C 1.36583 * 118.13200 * 180.02562 * 12 11 10 14 14 C 1.39430 * 119.84495 * 0.02562 * 13 12 11 15 15 N 1.31018 * 121.84327 * 0.02562 * 14 13 12 16 16 C 1.33860 * 121.42258 * 359.97438 * 15 14 13 17 17 N 1.31890 * 119.20371 * 359.97438 * 8 6 5 18 18 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 19 19 C 1.54915 * 104.83334 * 24.12789 * 18 5 4 20 20 H 1.09001 * 111.00387 * 81.05917 * 19 18 5 21 21 N 1.46496 * 111.00547 * 204.91767 * 19 18 5 22 22 C 1.36935 * 120.00087 * 267.19884 * 21 19 18 23 23 H 1.08005 * 119.99923 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00226 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00114 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 119.99926 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47021 * 90.00243 * 26 24 22 28 28 H 1.48498 * 109.47373 * 210.00308 * 26 24 22 29 29 H 1.48500 * 109.47403 * 330.00276 * 26 24 22 30 30 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 31 31 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 32 32 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 33 33 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 34 34 H 1.08998 * 109.87662 * 100.02567 * 4 2 1 35 35 H 1.07997 * 120.14682 * 359.97438 * 9 8 6 36 36 H 1.08000 * 120.89939 * 180.23579 * 10 9 8 37 37 H 1.08008 * 120.93208 * 0.02562 * 12 11 10 38 38 H 1.08005 * 120.07970 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.08165 * 179.97438 * 14 13 12 40 40 H 1.08997 * 110.36855 * 142.96531 * 18 5 4 41 41 H 1.08999 * 110.36490 * 265.17846 * 18 5 4 42 42 H 0.97002 * 120.00223 * 87.19063 * 21 19 18 43 43 H 0.97000 * 120.00028 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9913 -2.3848 -1.4894 7 8 3.7175 -2.5584 -2.6602 8 6 5.1480 -3.0909 -0.8856 9 6 5.9100 -3.9586 -1.6799 10 6 6.9808 -4.6098 -1.1360 11 6 7.2734 -4.3891 0.2214 12 6 8.3567 -5.0300 0.8509 13 6 8.5803 -4.7678 2.1725 14 6 7.7439 -3.8864 2.8564 15 7 6.7357 -3.2925 2.2670 16 6 6.4597 -3.5041 0.9744 17 7 5.4315 -2.8905 0.3867 18 6 3.4632 -1.2499 0.6876 19 6 2.0789 -0.7955 1.2139 20 1 1.4450 -1.6536 1.4375 21 7 2.2214 0.0696 2.3875 22 6 2.1867 -0.4713 3.6450 23 1 2.0539 -1.5357 3.7716 24 6 2.3212 0.3484 4.7572 25 7 2.2874 -0.1715 5.9659 26 14 2.5502 2.1893 4.5383 27 1 1.2226 2.8542 4.5177 28 1 3.3550 2.7255 5.6653 29 1 3.2552 2.4517 3.2579 30 1 -0.3634 -1.0271 0.0321 31 1 -0.3633 0.5414 0.8736 32 1 -0.3634 0.4859 -0.9055 33 1 1.3129 -1.4758 -1.5775 34 1 2.3740 -0.1025 -1.9977 35 1 5.6543 -4.1087 -2.7184 36 1 7.5834 -5.2798 -1.7313 37 1 8.9933 -5.7100 0.3042 38 1 9.4027 -5.2427 2.6870 39 1 7.9318 -3.6884 3.9013 40 1 3.7959 -2.1427 1.2170 41 1 4.1946 -0.4493 0.7985 42 1 2.3404 1.0255 2.2739 43 1 2.3818 0.4013 6.7430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054669948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:18 Heat of formation + Delta-G solvation = 71.868946 kcal Electronic energy + Delta-G solvation = -27368.604993 eV Core-core repulsion = 23608.065401 eV Total energy + Delta-G solvation = -3760.539592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43515 -39.88352 -38.08030 -37.26566 -34.44840 -34.05696 -32.55502 -31.27071 -31.09337 -30.85999 -27.83190 -26.91494 -25.30966 -24.28379 -23.61617 -22.75549 -21.45976 -20.32745 -19.92273 -18.75181 -17.75648 -17.47916 -17.25552 -16.22916 -16.09653 -15.54617 -15.15701 -14.94331 -14.49070 -14.41026 -14.14202 -13.83169 -13.37797 -13.30148 -13.16391 -13.07961 -12.83641 -12.57520 -12.29817 -12.12594 -11.93412 -11.70490 -11.35439 -11.27964 -11.13646 -10.85737 -10.59894 -10.44694 -10.29240 -10.04762 -9.87668 -9.54852 -9.17274 -9.12904 -9.08829 -8.80185 -8.34227 -7.26459 -5.73699 -3.10207 -0.11051 0.31149 1.68062 2.23088 2.96361 3.16694 3.40180 3.42749 3.47677 3.53643 4.00228 4.16566 4.35576 4.39407 4.49134 4.59722 4.61749 4.78511 4.91964 5.04506 5.10775 5.14066 5.20750 5.41629 5.49066 5.55969 5.63784 5.65241 5.74988 5.83805 5.86863 5.89484 5.91275 5.96517 6.20380 6.23755 6.35046 6.41682 6.51003 6.55973 6.85274 6.88739 7.17237 7.67558 7.95060 8.01541 8.20724 8.44792 9.21693 9.93749 10.12062 11.44407 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.004646 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.987859 B = 6024.774032 C = 8439.140006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 H 0.082 0.918 4 C 0.115 3.885 5 N -0.587 5.587 6 C 0.576 3.424 7 O -0.544 6.544 8 C 0.147 3.853 9 C -0.130 4.130 10 C -0.050 4.050 11 C -0.144 4.144 12 C -0.052 4.052 13 C -0.171 4.171 14 C 0.159 3.841 15 N -0.445 5.445 16 C 0.300 3.700 17 N -0.416 5.416 18 C 0.075 3.925 19 C 0.179 3.821 20 H 0.075 0.925 21 N -0.732 5.732 22 C -0.243 4.243 23 H 0.092 0.908 24 C 0.009 3.991 25 N -0.931 5.931 26 Si 0.881 3.119 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.363 0.637 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.420 -9.453 -14.203 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.140 4.140 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.318 5.318 6 C 0.362 3.638 7 O -0.422 6.422 8 C -0.011 4.011 9 C -0.151 4.151 10 C -0.077 4.077 11 C -0.150 4.150 12 C -0.079 4.079 13 C -0.191 4.191 14 C -0.019 4.019 15 N -0.153 5.153 16 C 0.061 3.939 17 N -0.128 5.128 18 C -0.049 4.049 19 C 0.067 3.933 20 H 0.093 0.907 21 N -0.373 5.373 22 C -0.372 4.372 23 H 0.110 0.890 24 C -0.187 4.187 25 N -0.579 5.579 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.188 0.812 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.196 0.804 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.164 -8.533 -13.662 19.046 hybrid contribution 1.463 0.240 -0.811 1.689 sum 11.626 -8.292 -14.473 20.332 Atomic orbital electron populations 1.21664 0.93708 1.02086 1.01694 1.22593 0.96664 0.99703 0.95056 0.90010 1.22066 0.87272 0.94452 0.96979 1.48414 1.28506 1.41543 1.13317 1.17503 0.81731 0.79476 0.85118 1.90753 1.70777 1.65186 1.15533 1.21422 0.95397 0.94987 0.89263 1.21784 0.94918 0.96131 1.02253 1.21414 0.95955 0.97313 0.93029 1.19768 0.98679 1.00403 0.96127 1.21453 0.94728 0.96707 0.94963 1.22098 1.01562 1.00031 0.95410 1.23253 0.88149 0.89893 1.00599 1.67776 1.17056 1.22244 1.08198 1.19416 0.91367 0.92466 0.90605 1.67919 1.14318 1.20951 1.09625 1.23837 1.00507 1.03094 0.77507 1.21436 0.92692 0.93419 0.85704 0.90680 1.42608 1.87815 1.05005 1.01900 1.19066 1.42303 0.94744 0.81110 0.89040 1.24627 1.01735 0.97234 0.95063 1.69699 1.56908 1.34311 0.96942 0.86598 0.77818 0.87375 0.77020 1.21105 1.21776 1.20330 0.92538 0.91466 0.93171 0.91093 0.91609 0.82789 0.83430 0.83985 0.83821 0.81248 0.87492 0.91448 0.80370 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.13 37.16 0.34 -1.52 16 2 C -0.12 -1.87 3.20 -88.78 -0.28 -2.16 16 3 H 0.08 1.26 8.00 -51.93 -0.42 0.85 16 4 C 0.11 1.72 6.46 -3.06 -0.02 1.70 16 5 N -0.59 -10.01 3.33 -171.44 -0.57 -10.58 16 6 C 0.58 9.78 7.84 -12.10 -0.09 9.69 16 7 O -0.54 -9.82 16.61 5.38 0.09 -9.73 16 8 C 0.15 2.29 6.73 -82.96 -0.56 1.73 16 9 C -0.13 -1.55 9.54 -39.44 -0.38 -1.93 16 10 C -0.05 -0.49 9.89 -39.28 -0.39 -0.88 16 11 C -0.14 -1.69 5.75 -106.68 -0.61 -2.30 16 12 C -0.05 -0.43 9.90 -39.24 -0.39 -0.82 16 13 C -0.17 -1.38 10.04 -39.74 -0.40 -1.78 16 14 C 0.16 1.79 11.14 -17.46 -0.19 1.60 16 15 N -0.44 -7.25 10.43 -12.59 -0.13 -7.38 16 16 C 0.30 4.75 7.62 -157.91 -1.20 3.55 16 17 N -0.42 -7.21 6.60 -9.19 -0.06 -7.27 16 18 C 0.08 1.44 5.62 -2.53 -0.01 1.42 16 19 C 0.18 3.48 3.16 -65.78 -0.21 3.27 16 20 H 0.08 1.52 7.99 -51.93 -0.41 1.11 16 21 N -0.73 -17.06 5.05 -51.34 -0.26 -17.32 16 22 C -0.24 -6.76 10.44 -15.06 -0.16 -6.92 16 23 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 25 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 26 Si 0.88 22.03 27.73 -169.99 -4.71 17.31 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.15 1.59 7.60 -52.49 -0.40 1.19 16 36 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 39 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.11 2.23 5.87 -51.93 -0.31 1.93 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.36 8.32 5.63 -40.82 -0.23 8.09 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -35.30 358.61 -9.69 -44.99 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.57 Total: 8.07 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -4.65 Total: 4.84 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.25 Total: -70.88 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.30 -9.69 -44.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054669948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.858 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds