Wall clock time and date at job start Tue Mar 31 2020 14:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34781 * 125.65221 * 155.83963 * 5 4 2 7 7 O 1.21496 * 119.99577 * 359.97438 * 6 5 4 8 8 C 1.48350 * 120.00374 * 179.97438 * 6 5 4 9 9 C 1.40170 * 119.20103 * 180.02562 * 8 6 5 10 10 C 1.36627 * 119.70336 * 179.97438 * 9 8 6 11 11 C 1.40589 * 118.21105 * 359.97438 * 10 9 8 12 12 C 1.40734 * 121.38173 * 179.97438 * 11 10 9 13 13 C 1.36587 * 118.13486 * 180.02562 * 12 11 10 14 14 C 1.39435 * 119.84708 * 359.97438 * 13 12 11 15 15 N 1.31014 * 121.83680 * 0.02562 * 14 13 12 16 16 C 1.33856 * 121.42770 * 0.02562 * 15 14 13 17 17 N 1.31881 * 119.20319 * 359.72784 * 8 6 5 18 18 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 19 19 C 1.54321 * 107.26791 * 1.06162 * 18 5 4 20 20 H 1.08998 * 110.72073 * 263.64892 * 19 18 5 21 21 N 1.46505 * 110.72162 * 140.55498 * 19 18 5 22 22 C 1.36933 * 119.99837 * 86.45308 * 21 19 18 23 23 H 1.08001 * 120.00555 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00025 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00154 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46871 * 89.99852 * 26 24 22 28 28 H 1.48504 * 109.47171 * 209.99854 * 26 24 22 29 29 H 1.48499 * 109.47180 * 330.00133 * 26 24 22 30 30 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 33 33 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 34 34 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 35 35 H 1.07994 * 120.15210 * 359.97238 * 9 8 6 36 36 H 1.08005 * 120.89058 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.93169 * 359.97438 * 12 11 10 38 38 H 1.07994 * 120.07718 * 179.97438 * 13 12 11 39 39 H 1.07997 * 119.07611 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.88266 * 120.47537 * 18 5 4 41 41 H 1.09000 * 109.88221 * 241.64354 * 18 5 4 42 42 H 0.96997 * 119.99915 * 266.45504 * 21 19 18 43 43 H 0.97006 * 119.99771 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4476 -1.5599 1.5984 7 8 4.2987 -1.4965 2.8026 8 6 5.7515 -1.9861 1.0337 9 6 6.8001 -2.3123 1.9046 10 6 8.0052 -2.7066 1.3956 11 6 8.1475 -2.7708 -0.0016 12 6 9.3591 -3.1678 -0.5974 13 6 9.4240 -3.2062 -1.9612 14 6 8.3068 -2.8576 -2.7192 15 7 7.1806 -2.4886 -2.1608 16 6 7.0483 -2.4279 -0.8302 17 7 5.8941 -2.0545 -0.2756 18 6 3.4707 -1.2757 -0.6935 19 6 2.0901 -0.8106 -1.2023 20 1 1.4525 -1.6664 -1.4241 21 7 2.2340 0.0456 -2.3824 22 6 2.3109 -0.5146 -3.6295 23 1 2.2659 -1.5876 -3.7433 24 6 2.4478 0.2967 -4.7475 25 7 2.5042 1.6043 -4.6088 26 14 2.5534 -0.4676 -6.4488 27 1 1.1883 -0.5985 -7.0182 28 1 3.3765 0.3988 -7.3304 29 1 3.1795 -1.8105 -6.3502 30 1 -0.3633 0.4752 0.9112 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 1.4520 -1.6705 1.4023 34 1 2.1542 -0.1726 2.0841 35 1 6.6563 -2.2523 2.9733 36 1 8.8263 -2.9620 2.0490 37 1 10.2139 -3.4338 0.0068 38 1 10.3385 -3.5059 -2.4513 39 1 8.3721 -2.8920 -3.7966 40 1 4.2461 -0.6013 -1.0569 41 1 3.6693 -2.2912 -1.0360 42 1 2.2748 1.0093 -2.2802 43 1 2.5995 2.1713 -5.3902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054669953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:21 Heat of formation + Delta-G solvation = 66.125044 kcal Electronic energy + Delta-G solvation = -27368.562023 eV Core-core repulsion = 23607.773356 eV Total energy + Delta-G solvation = -3760.788666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39414 -39.80555 -37.99677 -37.18378 -34.38166 -33.93028 -32.49557 -31.21940 -31.02848 -30.56128 -27.42891 -26.82954 -25.25863 -24.26157 -23.79150 -22.75473 -21.55650 -20.12218 -19.86288 -18.69596 -17.68374 -17.22768 -17.00618 -16.22060 -15.95325 -15.50897 -15.09777 -14.92519 -14.50392 -14.38132 -14.11484 -13.66738 -13.43602 -13.29623 -13.15339 -12.95190 -12.58319 -12.48165 -12.21375 -12.07676 -11.96013 -11.44038 -11.26500 -11.06327 -10.99764 -10.78374 -10.53972 -10.42757 -10.16560 -10.01872 -9.83123 -9.62262 -9.13596 -9.10380 -9.06222 -8.80251 -8.25774 -6.95355 -5.72941 -3.02191 -0.07638 0.33501 1.71070 2.26526 3.03655 3.21020 3.47597 3.52916 3.55089 3.57418 4.03684 4.18843 4.39394 4.41669 4.52105 4.60914 4.65338 4.82458 5.01308 5.08336 5.15214 5.26310 5.29319 5.45253 5.57030 5.66129 5.67278 5.73176 5.82772 5.88905 5.97039 5.98403 6.01148 6.09691 6.28814 6.37534 6.39232 6.56049 6.63047 6.68965 6.79902 7.08498 7.21331 7.73541 7.78610 7.98791 8.26570 8.44579 9.56737 10.10510 10.45660 11.49453 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.004971 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.238461 B = 5630.951290 C = 8469.473850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.112 3.888 5 N -0.586 5.586 6 C 0.575 3.425 7 O -0.547 6.547 8 C 0.146 3.854 9 C -0.129 4.129 10 C -0.052 4.052 11 C -0.144 4.144 12 C -0.052 4.052 13 C -0.172 4.172 14 C 0.157 3.843 15 N -0.445 5.445 16 C 0.300 3.700 17 N -0.414 5.414 18 C 0.090 3.910 19 C 0.172 3.828 20 H 0.064 0.936 21 N -0.710 5.710 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.010 4.010 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.386 0.614 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.361 -9.702 11.621 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.011 4.011 5 N -0.316 5.316 6 C 0.361 3.639 7 O -0.425 6.425 8 C -0.011 4.011 9 C -0.150 4.150 10 C -0.079 4.079 11 C -0.150 4.150 12 C -0.078 4.078 13 C -0.192 4.192 14 C -0.021 4.021 15 N -0.153 5.153 16 C 0.062 3.938 17 N -0.126 5.126 18 C -0.035 4.035 19 C 0.060 3.940 20 H 0.082 0.918 21 N -0.349 5.349 22 C -0.368 4.368 23 H 0.089 0.911 24 C -0.206 4.206 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.206 1.206 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.220 0.780 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.830 -9.317 11.043 18.057 hybrid contribution 1.767 -0.507 -0.090 1.841 sum 12.597 -9.824 10.953 19.369 Atomic orbital electron populations 1.21595 0.93793 1.01842 1.01726 1.22688 0.96301 0.99802 0.94658 0.89784 1.22355 0.82293 0.98372 0.98038 1.48467 1.11332 1.62542 1.09299 1.17518 0.82387 0.78645 0.85377 1.90749 1.82538 1.55543 1.13688 1.21428 0.95000 0.96011 0.88708 1.21802 0.92414 0.98477 1.02297 1.21402 0.97681 0.95598 0.93242 1.19769 0.96570 1.02994 0.95632 1.21449 0.96053 0.94968 0.95361 1.22082 1.00758 1.01616 0.94730 1.23222 0.86953 0.90691 1.01247 1.67752 1.25526 1.12167 1.09813 1.19376 0.88516 0.95998 0.89916 1.67890 1.22833 1.10263 1.11577 1.23475 1.01914 1.02523 0.75607 1.21431 0.92131 0.93617 0.86804 0.91806 1.42319 1.86860 1.05196 1.00572 1.19226 1.42156 0.91871 0.83544 0.91055 1.24710 1.02683 0.95326 0.97833 1.69666 1.57206 1.02295 1.28912 0.86206 0.77344 0.78188 0.84591 1.21827 1.21869 1.20606 0.93217 0.91385 0.92775 0.91230 0.90690 0.82803 0.83466 0.84008 0.83881 0.81382 0.89709 0.91438 0.77975 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.31 37.16 0.35 -1.56 16 2 C -0.11 -1.90 3.26 -88.31 -0.29 -2.19 16 3 H 0.08 1.47 8.01 -51.93 -0.42 1.06 16 4 C 0.11 1.74 6.37 -2.53 -0.02 1.73 16 5 N -0.59 -10.39 3.33 -171.45 -0.57 -10.96 16 6 C 0.57 10.14 7.84 -12.10 -0.09 10.04 16 7 O -0.55 -10.17 16.53 5.37 0.09 -10.08 16 8 C 0.15 2.37 6.73 -82.96 -0.56 1.81 16 9 C -0.13 -1.61 9.54 -39.44 -0.38 -1.98 16 10 C -0.05 -0.53 9.89 -39.28 -0.39 -0.92 16 11 C -0.14 -1.74 5.75 -106.68 -0.61 -2.36 16 12 C -0.05 -0.44 9.90 -39.24 -0.39 -0.83 16 13 C -0.17 -1.42 10.04 -39.73 -0.40 -1.82 16 14 C 0.16 1.79 11.14 -17.45 -0.19 1.60 16 15 N -0.44 -7.37 10.43 -12.59 -0.13 -7.50 16 16 C 0.30 4.89 7.62 -157.91 -1.20 3.69 16 17 N -0.41 -7.41 6.85 -9.19 -0.06 -7.47 16 18 C 0.09 1.78 5.14 -3.06 -0.02 1.76 16 19 C 0.17 3.45 3.07 -65.94 -0.20 3.25 16 20 H 0.06 1.28 8.01 -51.93 -0.42 0.87 16 21 N -0.71 -17.59 5.18 -51.50 -0.27 -17.86 16 22 C -0.24 -6.53 9.98 -15.06 -0.15 -6.69 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 26 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 34 H 0.07 1.12 8.03 -51.93 -0.42 0.71 16 35 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 36 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.08 1.92 7.30 -51.93 -0.38 1.54 16 41 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 42 H 0.39 10.20 7.72 -40.82 -0.32 9.88 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -34.51 362.30 -10.07 -44.59 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.65 Total: 8.51 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -4.64 Total: 5.17 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -0.31 Total: -71.16 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.51 -10.07 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054669953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.713 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds