Wall clock time and date at job start Tue Mar 31 2020 14:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.88445 * 2 1 4 4 C 1.54908 * 111.00368 * 236.12120 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21490 * 119.99583 * 0.02562 * 6 5 4 8 8 C 1.48357 * 120.00248 * 179.97438 * 6 5 4 9 9 C 1.40164 * 119.20134 * 180.02562 * 8 6 5 10 10 C 1.36622 * 119.70521 * 179.97438 * 9 8 6 11 11 C 1.40596 * 118.21155 * 0.02562 * 10 9 8 12 12 C 1.40728 * 121.38494 * 179.97438 * 11 10 9 13 13 C 1.36585 * 118.13531 * 180.02562 * 12 11 10 14 14 C 1.39424 * 119.84991 * 0.02562 * 13 12 11 15 15 N 1.31019 * 121.83669 * 0.02562 * 14 13 12 16 16 C 1.33859 * 121.42455 * 359.95951 * 15 14 13 17 17 N 1.31884 * 119.20082 * 359.73270 * 8 6 5 18 18 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 19 19 C 1.54325 * 107.30599 * 358.92448 * 18 5 4 20 20 H 1.09002 * 110.72180 * 219.45147 * 19 18 5 21 21 N 1.46499 * 110.71877 * 96.18142 * 19 18 5 22 22 C 1.36941 * 120.00165 * 91.47613 * 21 19 18 23 23 H 1.08007 * 119.99638 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00136 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00090 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00156 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46686 * 60.00577 * 26 24 22 28 28 H 1.48497 * 109.47256 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47120 * 300.00953 * 26 24 22 30 30 H 1.09001 * 109.47276 * 182.42937 * 1 2 3 31 31 H 1.09003 * 109.46690 * 302.42477 * 1 2 3 32 32 H 1.08998 * 109.47248 * 62.42638 * 1 2 3 33 33 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 34 34 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 35 35 H 1.08000 * 120.15271 * 0.02562 * 9 8 6 36 36 H 1.08001 * 120.89869 * 179.97438 * 10 9 8 37 37 H 1.08007 * 120.93608 * 0.02562 * 12 11 10 38 38 H 1.08002 * 120.08003 * 180.02562 * 13 12 11 39 39 H 1.08004 * 119.08653 * 179.97438 * 14 13 12 40 40 H 1.09004 * 109.85762 * 239.50064 * 18 5 4 41 41 H 1.08995 * 110.00297 * 118.43011 * 18 5 4 42 42 H 0.96996 * 120.00138 * 271.47877 * 21 19 18 43 43 H 0.96999 * 120.00031 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7766 6 6 4.4473 -1.5595 -1.5994 7 8 4.2983 -1.4956 -2.8034 8 6 5.7516 -1.9849 -1.0349 9 6 6.8005 -2.3099 -1.9060 10 6 8.0061 -2.7025 -1.3973 11 6 8.1489 -2.7663 -0.0001 12 6 9.3609 -3.1625 0.5954 13 6 9.4259 -3.2016 1.9592 14 6 8.3086 -2.8543 2.7174 15 7 7.1816 -2.4868 2.1593 16 6 7.0489 -2.4263 0.8287 17 7 5.8980 -2.0425 0.2746 18 6 3.4675 -1.2744 0.6955 19 6 2.0862 -0.8083 1.2019 20 1 2.1922 -0.1707 2.0796 21 7 1.2269 -1.9579 1.4955 22 6 1.2059 -2.4930 2.7559 23 1 1.8226 -2.0671 3.5336 24 6 0.3913 -3.5819 3.0341 25 7 -0.3606 -4.1006 2.0865 26 14 0.3632 -4.3122 4.7533 27 1 -0.0772 -3.2776 5.7233 28 1 -0.5803 -5.4583 4.7889 29 1 1.7252 -4.7813 5.1141 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3633 0.5511 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 1.4518 -1.6698 -1.4031 34 1 2.1541 -0.1717 -2.0842 35 1 6.6565 -2.2495 -2.9747 36 1 8.8273 -2.9577 -2.0508 37 1 10.2157 -3.4283 -0.0089 38 1 10.3407 -3.5008 2.4492 39 1 8.3735 -2.8899 3.7949 40 1 4.2427 -0.6001 1.0596 41 1 3.6662 -2.2887 1.0414 42 1 0.6728 -2.3402 0.7971 43 1 -0.9295 -4.8617 2.2809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054669955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:24 Heat of formation + Delta-G solvation = 69.068157 kcal Electronic energy + Delta-G solvation = -27441.294927 eV Core-core repulsion = 23680.633884 eV Total energy + Delta-G solvation = -3760.661043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41625 -39.78011 -38.05670 -37.19111 -34.41134 -33.82025 -32.37696 -31.23843 -31.04362 -30.34755 -27.64208 -26.76417 -25.22968 -24.25657 -23.70570 -22.81774 -22.00619 -20.14381 -19.21044 -18.68194 -17.78324 -17.35582 -17.12512 -16.12843 -15.83590 -15.48807 -15.02819 -14.85775 -14.52105 -14.41180 -14.23027 -13.72304 -13.61039 -13.34633 -13.01623 -12.91471 -12.63674 -12.27698 -12.16770 -11.95318 -11.83290 -11.42979 -11.27296 -11.05481 -10.90535 -10.79449 -10.56519 -10.28366 -10.19433 -10.00514 -9.82316 -9.54787 -9.15989 -9.14977 -9.09189 -8.83449 -8.18637 -6.95277 -5.74285 -3.03029 -0.10375 0.30974 1.67963 2.26276 3.08758 3.23556 3.47282 3.51661 3.52667 3.55535 4.01351 4.16236 4.37274 4.40032 4.51169 4.59636 4.62114 4.80509 5.03439 5.08589 5.11756 5.31166 5.41754 5.43730 5.56635 5.63027 5.66367 5.78181 5.86789 5.92613 5.94677 5.98978 6.11445 6.31294 6.35190 6.39251 6.43659 6.54426 6.68964 6.76628 7.00282 7.05557 7.17655 7.75087 7.83221 7.94457 8.32385 8.44040 9.55683 10.10526 10.45629 11.48113 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.004410 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.890604 B = 6347.309944 C = 8400.475975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.112 3.888 5 N -0.579 5.579 6 C 0.573 3.427 7 O -0.547 6.547 8 C 0.152 3.848 9 C -0.128 4.128 10 C -0.052 4.052 11 C -0.145 4.145 12 C -0.049 4.049 13 C -0.174 4.174 14 C 0.156 3.844 15 N -0.450 5.450 16 C 0.300 3.700 17 N -0.417 5.417 18 C 0.089 3.911 19 C 0.167 3.833 20 H 0.073 0.927 21 N -0.711 5.711 22 C -0.239 4.239 23 H 0.072 0.928 24 C -0.010 4.010 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.386 0.614 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.838 5.083 -5.123 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.010 4.010 5 N -0.309 5.309 6 C 0.359 3.641 7 O -0.425 6.425 8 C -0.006 4.006 9 C -0.149 4.149 10 C -0.079 4.079 11 C -0.150 4.150 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.021 4.021 15 N -0.159 5.159 16 C 0.062 3.938 17 N -0.130 5.130 18 C -0.036 4.036 19 C 0.055 3.945 20 H 0.091 0.909 21 N -0.352 5.352 22 C -0.370 4.370 23 H 0.090 0.910 24 C -0.206 4.206 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.221 0.779 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.291 5.499 -4.544 19.633 hybrid contribution 1.379 -1.234 -0.192 1.861 sum 19.670 4.265 -4.736 20.677 Atomic orbital electron populations 1.21557 0.93313 1.03563 1.00469 1.22661 0.97000 0.98452 0.95506 0.90394 1.22363 0.82373 0.98646 0.97578 1.48426 1.11270 1.62203 1.09032 1.17463 0.82402 0.78815 0.85413 1.90751 1.82602 1.55500 1.13672 1.21471 0.94968 0.95531 0.88620 1.21824 0.92323 0.98335 1.02409 1.21410 0.97765 0.95475 0.93238 1.19757 0.96515 1.03093 0.95664 1.21461 0.96078 0.94666 0.95373 1.22056 1.00805 1.01835 0.94732 1.23178 0.86946 0.90887 1.01133 1.67695 1.25310 1.12899 1.09947 1.19361 0.88561 0.96007 0.89870 1.67866 1.22372 1.10971 1.11748 1.23443 0.99978 1.03521 0.76635 1.21329 0.88702 0.89825 0.94669 0.90922 1.42428 1.48881 1.33047 1.10802 1.19218 1.20187 1.09840 0.87750 0.91013 1.24709 0.99508 0.98838 0.97569 1.69647 1.30337 1.26328 1.31788 0.86285 0.77205 0.78524 0.84288 1.21238 1.21830 1.21286 0.90781 0.92309 0.93785 0.90822 0.91019 0.82726 0.83432 0.83988 0.83900 0.81451 0.91703 0.89545 0.77887 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.98 37.16 0.33 -1.81 16 2 C -0.12 -1.92 3.51 -88.47 -0.31 -2.23 16 3 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 4 C 0.11 1.95 6.33 -2.53 -0.02 1.93 16 5 N -0.58 -10.77 3.34 -171.23 -0.57 -11.34 16 6 C 0.57 10.54 7.85 -12.10 -0.09 10.44 16 7 O -0.55 -10.70 16.53 5.37 0.09 -10.61 16 8 C 0.15 2.48 6.73 -82.96 -0.56 1.93 16 9 C -0.13 -1.62 9.54 -39.44 -0.38 -2.00 16 10 C -0.05 -0.53 9.89 -39.28 -0.39 -0.91 16 11 C -0.15 -1.70 5.75 -106.68 -0.61 -2.32 16 12 C -0.05 -0.40 9.90 -39.24 -0.39 -0.79 16 13 C -0.17 -1.31 10.04 -39.74 -0.40 -1.71 16 14 C 0.16 1.60 11.14 -17.46 -0.19 1.41 16 15 N -0.45 -6.86 10.43 -12.59 -0.13 -6.99 16 16 C 0.30 4.69 7.62 -157.91 -1.20 3.49 16 17 N -0.42 -7.30 6.87 -9.19 -0.06 -7.36 16 18 C 0.09 1.74 5.15 -2.92 -0.02 1.73 16 19 C 0.17 3.31 3.39 -66.10 -0.22 3.09 16 20 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 21 N -0.71 -17.32 4.46 -51.65 -0.23 -17.55 16 22 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 26 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.07 1.42 6.27 -51.93 -0.33 1.10 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 34 H 0.07 1.15 8.03 -51.93 -0.42 0.73 16 35 H 0.16 1.73 7.60 -52.49 -0.40 1.33 16 36 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.06 1.22 7.40 -51.93 -0.38 0.83 16 41 H 0.09 1.98 7.45 -51.93 -0.39 1.59 16 42 H 0.39 10.00 6.25 -40.82 -0.25 9.75 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -34.27 358.75 -10.00 -44.27 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.51 Total: 8.78 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -4.69 Total: 5.17 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.27 Total: -70.49 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.27 -10.00 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054669955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.339 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds