Wall clock time and date at job start Tue Mar 31 2020 14:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 110.91432 * 2 1 4 4 C 1.54909 * 111.00288 * 123.90573 * 2 1 3 5 5 N 1.47743 * 104.83995 * 155.16710 * 4 2 1 6 6 C 1.34780 * 125.81887 * 155.82587 * 5 4 2 7 7 O 1.21539 * 120.00329 * 359.92989 * 6 5 4 8 8 C 1.47898 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.32141 * 120.03447 * 359.73178 * 8 6 5 10 10 C 1.31980 * 122.77038 * 179.69542 * 9 8 6 11 11 C 1.37770 * 121.72603 * 0.58186 * 10 9 8 12 12 C 1.40382 * 118.73079 * 359.71791 * 11 10 9 13 13 C 1.40649 * 122.27779 * 179.97438 * 12 11 10 14 14 C 1.36645 * 117.95018 * 180.02562 * 13 12 11 15 15 C 1.39396 * 119.92369 * 0.02562 * 14 13 12 16 16 N 1.31206 * 121.85748 * 359.97438 * 15 14 13 17 17 C 1.33258 * 121.22345 * 0.02562 * 16 15 14 18 18 C 1.47020 * 108.53125 * 335.74644 * 5 4 2 19 19 C 1.54324 * 107.39983 * 1.18235 * 18 5 4 20 20 H 1.09004 * 110.71964 * 140.48013 * 19 18 5 21 21 N 1.46501 * 110.72010 * 263.75014 * 19 18 5 22 22 C 1.36932 * 120.00386 * 273.54813 * 21 19 18 23 23 H 1.08009 * 119.99883 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00314 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99858 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00063 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47408 * 59.99735 * 26 24 22 28 28 H 1.48499 * 109.47176 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47105 * 299.99962 * 26 24 22 30 30 H 1.08996 * 109.46861 * 183.90532 * 1 2 3 31 31 H 1.08998 * 109.46481 * 303.89945 * 1 2 3 32 32 H 1.09002 * 109.46945 * 63.90165 * 1 2 3 33 33 H 1.09003 * 110.36363 * 273.92036 * 4 2 1 34 34 H 1.09001 * 110.36855 * 36.23886 * 4 2 1 35 35 H 1.08002 * 119.13550 * 180.29449 * 10 9 8 36 36 H 1.08005 * 120.63280 * 179.69530 * 11 10 9 37 37 H 1.07996 * 121.02457 * 0.02562 * 13 12 11 38 38 H 1.08003 * 120.03813 * 180.02562 * 14 13 12 39 39 H 1.07999 * 119.07125 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.88367 * 241.68734 * 18 5 4 41 41 H 1.09000 * 109.88319 * 120.67352 * 18 5 4 42 42 H 0.97003 * 119.99337 * 93.54495 * 21 19 18 43 43 H 0.96993 * 120.00018 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 3.4309 -1.2424 0.7733 6 6 4.4539 -1.5596 1.5916 7 8 4.3099 -1.4974 2.7968 8 6 5.7520 -1.9825 1.0228 9 7 5.9080 -2.0547 -0.2874 10 6 7.0434 -2.4195 -0.8526 11 6 8.1476 -2.7636 -0.1039 12 6 8.0551 -2.7163 1.2960 13 6 9.1353 -3.0521 2.1319 14 6 8.9474 -2.9754 3.4832 15 6 7.7132 -2.5743 3.9920 16 7 6.7090 -2.2622 3.2073 17 6 6.8261 -2.3160 1.8810 18 6 3.4675 -1.2742 -0.6961 19 6 2.0861 -0.8080 -1.2022 20 1 2.1922 -0.1700 -2.0797 21 7 1.2268 -1.9575 -1.4962 22 6 1.2814 -2.5564 -2.7264 23 1 1.9579 -2.1811 -3.4802 24 6 0.4676 -3.6459 -3.0048 25 7 -0.3571 -4.1030 -2.0864 26 14 0.5427 -4.4633 -4.6827 27 1 1.9170 -4.9710 -4.9250 28 1 -0.4182 -5.5946 -4.7257 29 1 0.1885 -3.4736 -5.7318 30 1 -0.3633 -1.0253 0.0700 31 1 -0.3632 0.5732 0.8530 32 1 -0.3633 0.4521 -0.9229 33 1 2.1560 -0.1721 2.0836 34 1 1.4519 -1.6704 1.4024 35 1 7.1073 -2.4537 -1.9302 36 1 9.0667 -3.0643 -0.5850 37 1 10.0840 -3.3610 1.7185 38 1 9.7543 -3.2252 4.1563 39 1 7.5797 -2.5189 5.0623 40 1 3.6650 -2.2895 -1.0401 41 1 4.2429 -0.6014 -1.0623 42 1 0.6191 -2.2943 -0.8193 43 1 -0.9260 -4.8640 -2.2810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054747259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:44 Heat of formation + Delta-G solvation = 46.267711 kcal Electronic energy + Delta-G solvation = -27482.789101 eV Core-core repulsion = 23721.139356 eV Total energy + Delta-G solvation = -3761.649745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.36811 -40.87586 -39.08754 -38.81340 -35.66374 -34.77949 -33.87994 -32.49374 -32.22380 -31.48170 -29.27335 -27.82939 -26.25237 -25.69351 -25.09852 -24.37488 -23.18207 -20.95476 -20.67348 -19.72346 -19.31372 -18.58943 -18.16843 -17.35176 -17.20445 -16.65849 -16.35010 -16.03237 -15.67997 -15.54781 -15.35605 -15.24023 -14.76348 -14.49112 -14.33495 -14.02714 -13.97818 -13.73654 -13.53094 -13.32083 -13.06305 -13.01420 -12.82188 -12.73202 -12.31701 -12.16363 -11.97992 -11.82691 -11.44801 -11.44007 -11.24686 -11.03013 -10.73765 -10.37889 -10.16785 -9.68422 -9.41987 -8.96247 -7.89015 -5.17001 -1.10557 -0.33179 0.64149 1.49797 1.52589 1.58264 1.62914 1.89749 2.16144 2.60021 2.99620 3.05701 3.19767 3.38619 3.43036 3.57887 3.66814 3.73799 3.93638 3.93956 3.96031 4.09791 4.21311 4.26024 4.45257 4.47283 4.56952 4.61706 4.65004 4.70380 4.76865 4.91102 4.94451 5.04191 5.06254 5.09977 5.26921 5.28961 5.34569 5.44284 5.55865 5.61397 5.62592 6.32056 6.48651 6.61480 6.90843 7.14570 7.39139 8.13623 8.37706 9.34422 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.003662 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.848502 B = 7644.807032 C = 8878.882554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 H 0.109 0.891 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.565 3.435 7 O -0.546 6.546 8 C 0.096 3.904 9 N -0.446 5.446 10 C 0.049 3.951 11 C -0.088 4.088 12 C -0.105 4.105 13 C -0.049 4.049 14 C -0.152 4.152 15 C 0.128 3.872 16 N -0.487 5.487 17 C 0.085 3.915 18 C 0.110 3.890 19 C 0.158 3.842 20 H 0.081 0.919 21 N -0.722 5.722 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.970 3.030 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.275 1.275 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.194 0.806 36 H 0.198 0.802 37 H 0.193 0.807 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.374 0.626 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.506 5.739 6.997 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.118 4.118 3 H 0.127 0.873 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.352 3.648 7 O -0.423 6.423 8 C -0.055 4.055 9 N -0.159 5.159 10 C -0.098 4.098 11 C -0.108 4.108 12 C -0.113 4.113 13 C -0.075 4.075 14 C -0.173 4.173 15 C -0.045 4.045 16 N -0.196 5.196 17 C -0.039 4.039 18 C -0.015 4.015 19 C 0.048 3.952 20 H 0.098 0.902 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.099 0.901 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.800 3.200 27 H -0.206 1.206 28 H -0.229 1.229 29 H -0.201 1.201 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.211 0.789 36 H 0.215 0.785 37 H 0.210 0.790 38 H 0.206 0.794 39 H 0.201 0.799 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.208 0.792 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.974 6.198 7.125 23.918 hybrid contribution 0.549 -1.457 -0.345 1.595 sum 22.523 4.742 6.780 23.995 Atomic orbital electron populations 1.21462 0.93092 1.01378 1.02137 1.22584 0.96969 0.99164 0.93078 0.87289 1.22356 0.82046 0.97826 0.98452 1.48491 1.11511 1.64247 1.08546 1.17780 0.83107 0.78434 0.85463 1.90761 1.82829 1.54381 1.14339 1.21136 0.93618 1.01274 0.89472 1.67584 1.27325 1.10222 1.10751 1.23279 0.87322 0.96648 1.02585 1.22945 1.01522 0.94804 0.91537 1.19364 0.94543 1.00858 0.96516 1.21990 0.98249 0.93972 0.93253 1.22539 0.99033 0.98687 0.97002 1.23939 0.88573 0.90478 1.01550 1.68236 1.33084 1.14491 1.03779 1.19590 0.93535 0.99233 0.91527 1.22936 0.99519 1.01432 0.77603 1.21577 0.88614 0.88820 0.96169 0.90159 1.42593 1.45982 1.34016 1.13659 1.19616 1.16901 1.08590 0.91412 0.90091 1.25505 0.99717 1.00266 1.01265 1.69823 1.28945 1.28276 1.35190 0.85258 0.76899 0.77667 0.80218 1.20619 1.22852 1.20106 0.94384 0.90868 0.92136 0.90229 0.93481 0.78946 0.78525 0.78987 0.79424 0.79870 0.93029 0.90528 0.79202 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.85 71.99 0.64 -3.38 16 2 C -0.10 -3.25 3.51 -9.40 -0.03 -3.28 16 3 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 4 C 0.12 4.30 6.38 86.79 0.55 4.85 16 5 N -0.60 -23.91 3.34 -814.32 -2.72 -26.63 16 6 C 0.56 23.93 7.84 86.80 0.68 24.61 16 7 O -0.55 -25.47 15.48 -3.84 -0.06 -25.53 16 8 C 0.10 3.53 6.78 42.45 0.29 3.82 16 9 N -0.45 -14.51 6.81 -184.14 -1.25 -15.76 16 10 C 0.05 1.10 11.12 84.56 0.94 2.04 16 11 C -0.09 -1.43 9.93 22.68 0.23 -1.21 16 12 C -0.11 -2.24 5.75 -21.27 -0.12 -2.36 16 13 C -0.05 -0.59 9.95 22.49 0.22 -0.37 16 14 C -0.15 -1.79 10.03 22.18 0.22 -1.56 16 15 C 0.13 2.61 11.14 85.07 0.95 3.56 16 16 N -0.49 -15.83 8.49 -187.92 -1.60 -17.43 16 17 C 0.09 2.73 6.61 40.62 0.27 3.00 16 18 C 0.11 4.29 5.14 86.73 0.45 4.74 16 19 C 0.16 6.21 3.37 46.18 0.16 6.36 16 20 H 0.08 2.97 8.12 -2.38 -0.02 2.95 16 21 N -0.72 -35.82 4.61 -317.31 -1.46 -37.28 16 22 C -0.23 -12.67 9.98 84.03 0.84 -11.83 16 23 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 24 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 25 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 26 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 29 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 30 H 0.04 1.49 6.38 -2.39 -0.02 1.47 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.78 8.05 -2.39 -0.02 2.76 16 34 H 0.05 1.96 7.98 -2.39 -0.02 1.94 16 35 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.05 2.33 7.45 -2.39 -0.02 2.32 16 41 H 0.08 2.69 7.42 -2.39 -0.02 2.68 16 42 H 0.37 20.30 6.10 -92.71 -0.57 19.73 16 43 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -82.79 356.90 2.44 -80.35 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.48 Total: 28.75 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 6.74 Total: 25.13 kcal Atomic # 7 Polarization: -150.02 SS G_CDS: -6.75 Total: -156.77 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -82.79 2.44 -80.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054747259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.619 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds