Wall clock time and date at job start Tue Mar 31 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.64306 * 2 1 4 4 C 1.54332 * 111.00316 * 236.92052 * 2 1 3 5 5 N 1.47026 * 107.26725 * 219.60264 * 4 2 1 6 6 C 1.34779 * 125.64716 * 178.85011 * 5 4 2 7 7 O 1.21547 * 120.00060 * 359.71725 * 6 5 4 8 8 C 1.47900 * 119.99820 * 179.71498 * 6 5 4 9 9 N 1.32137 * 120.03000 * 0.29699 * 8 6 5 10 10 C 1.31982 * 122.76692 * 180.27181 * 9 8 6 11 11 C 1.37778 * 121.72736 * 359.41552 * 10 9 8 12 12 C 1.40392 * 118.72787 * 0.28666 * 11 10 9 13 13 C 1.40644 * 122.27657 * 179.97438 * 12 11 10 14 14 C 1.36644 * 117.95002 * 180.02562 * 13 12 11 15 15 C 1.39400 * 119.92398 * 359.97438 * 14 13 12 16 16 N 1.31202 * 121.85527 * 0.02562 * 15 14 13 17 17 C 1.33260 * 121.22324 * 359.97438 * 16 15 14 18 18 C 1.47428 * 108.70152 * 358.58463 * 5 4 2 19 19 C 1.54911 * 104.83107 * 24.35643 * 18 5 4 20 20 H 1.09001 * 111.00351 * 204.87698 * 19 18 5 21 21 N 1.46497 * 111.00336 * 81.06522 * 19 18 5 22 22 C 1.36932 * 120.00233 * 86.45119 * 21 19 18 23 23 H 1.08001 * 119.99834 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00366 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99726 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00237 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47243 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46820 * 120.00397 * 26 24 22 29 29 H 1.48506 * 109.47345 * 240.00476 * 26 24 22 30 30 H 1.08991 * 109.46966 * 296.85940 * 1 2 3 31 31 H 1.08998 * 109.46532 * 56.85738 * 1 2 3 32 32 H 1.09000 * 109.47052 * 176.86069 * 1 2 3 33 33 H 1.09005 * 109.99236 * 100.12997 * 4 2 1 34 34 H 1.08998 * 109.78372 * 338.96023 * 4 2 1 35 35 H 1.08002 * 119.14040 * 179.70193 * 10 9 8 36 36 H 1.07998 * 120.64019 * 180.30134 * 11 10 9 37 37 H 1.07995 * 121.02655 * 0.02562 * 13 12 11 38 38 H 1.07992 * 120.03899 * 180.02562 * 14 13 12 39 39 H 1.07999 * 119.07213 * 179.97438 * 15 14 13 40 40 H 1.08998 * 110.36586 * 143.19429 * 18 5 4 41 41 H 1.08998 * 110.36759 * 265.51482 * 18 5 4 42 42 H 0.97009 * 120.00168 * 266.45416 * 21 19 18 43 43 H 0.97000 * 119.99847 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2495 -1.5471 -0.7353 6 6 4.0005 -2.3786 -1.4843 7 8 3.7291 -2.5530 -2.6562 8 6 5.1548 -3.0787 -0.8804 9 7 5.4468 -2.8939 0.3950 10 6 6.4665 -3.4865 0.9875 11 6 7.2940 -4.3545 0.3091 12 6 7.0418 -4.6046 -1.0491 13 6 7.8387 -5.4761 -1.8129 14 6 7.5135 -5.6545 -3.1281 15 6 6.4201 -4.9817 -3.6714 16 7 5.6803 -4.1698 -2.9539 17 6 5.9434 -3.9520 -1.6659 18 6 3.4652 -1.2447 0.6914 19 6 2.0790 -0.7934 1.2152 20 1 2.1820 -0.1495 2.0886 21 7 1.2295 -1.9486 1.5152 22 6 1.3001 -2.5498 2.7434 23 1 1.9818 -2.1721 3.4911 24 6 0.4948 -3.6441 3.0279 25 7 -0.3364 -4.1041 2.1169 26 14 0.5917 -4.4647 4.7032 27 1 1.5967 -3.7625 5.5410 28 1 -0.7364 -4.3986 5.3643 29 1 0.9913 -5.8852 4.5363 30 1 -0.3633 0.4643 0.9167 31 1 -0.3632 0.5619 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3849 -0.0961 -1.9951 34 1 1.3217 -1.4702 -1.5824 35 1 6.6546 -3.2894 2.0326 36 1 8.1207 -4.8336 0.8126 37 1 8.6817 -5.9887 -1.3736 38 1 8.1023 -6.3164 -3.7456 39 1 6.1757 -5.1325 -4.7125 40 1 3.7993 -2.1364 1.2219 41 1 4.1930 -0.4410 0.8030 42 1 0.6169 -2.2876 0.8437 43 1 -0.8988 -4.8690 2.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054747269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:48 Heat of formation + Delta-G solvation = 71.303748 kcal Electronic energy + Delta-G solvation = -27787.764551 eV Core-core repulsion = 24027.200450 eV Total energy + Delta-G solvation = -3760.564101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34642 -39.45765 -38.01445 -37.28665 -33.80574 -33.74615 -32.35378 -31.50416 -30.57079 -30.28779 -27.60135 -26.47029 -25.16884 -24.16817 -23.77202 -23.22211 -21.67871 -19.73338 -19.12629 -18.63969 -17.59620 -17.44142 -16.96015 -16.10590 -15.79586 -15.30935 -14.82041 -14.75277 -14.47140 -14.43345 -13.92415 -13.71324 -13.39665 -13.27004 -12.95226 -12.87079 -12.67162 -12.49890 -12.22458 -11.99600 -11.80440 -11.38868 -11.04700 -10.89530 -10.87807 -10.66652 -10.43344 -10.21354 -9.96511 -9.86155 -9.61644 -9.53039 -9.44112 -9.12816 -8.83368 -8.53983 -7.99010 -6.91548 -5.74969 -3.03139 -0.11204 0.58764 1.57924 2.73814 3.27091 3.38705 3.43131 3.48360 3.51108 4.07453 4.14244 4.22164 4.33186 4.47177 4.59532 4.60368 4.64286 5.00975 5.02137 5.21586 5.28406 5.32901 5.41990 5.44649 5.50505 5.66305 5.72815 5.78501 5.92003 5.93912 6.02810 6.12962 6.17450 6.34752 6.38761 6.42946 6.48964 6.52159 6.75727 6.80792 7.00045 7.13065 7.63130 7.72556 7.84689 8.05439 8.43259 8.64751 9.54802 10.12300 10.46915 11.47639 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.004354 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.524013 B = 6429.191559 C = 7741.114753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.118 3.882 5 N -0.583 5.583 6 C 0.574 3.426 7 O -0.512 6.512 8 C 0.155 3.845 9 N -0.427 5.427 10 C 0.079 3.921 11 C -0.131 4.131 12 C -0.083 4.083 13 C -0.065 4.065 14 C -0.158 4.158 15 C 0.125 3.875 16 N -0.418 5.418 17 C 0.105 3.895 18 C 0.072 3.928 19 C 0.167 3.833 20 H 0.069 0.931 21 N -0.710 5.710 22 C -0.237 4.237 23 H 0.072 0.928 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.294 1.294 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.167 0.833 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.386 0.614 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.372 1.668 -7.209 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.315 5.315 6 C 0.360 3.640 7 O -0.387 6.387 8 C 0.002 3.998 9 N -0.139 5.139 10 C -0.067 4.067 11 C -0.152 4.152 12 C -0.090 4.090 13 C -0.091 4.091 14 C -0.179 4.179 15 C -0.049 4.049 16 N -0.125 5.125 17 C -0.020 4.020 18 C -0.053 4.053 19 C 0.055 3.945 20 H 0.087 0.913 21 N -0.351 5.351 22 C -0.368 4.368 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.221 1.221 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.222 0.778 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.038 2.515 -7.399 17.841 hybrid contribution 1.233 -1.875 0.733 2.361 sum 17.271 0.640 -6.666 18.524 Atomic orbital electron populations 1.21593 0.93549 1.02935 1.00809 1.22498 0.96947 0.98530 0.95393 0.90331 1.21980 0.87701 0.94284 0.96514 1.48160 1.28541 1.42397 1.12392 1.17165 0.81798 0.79655 0.85416 1.90822 1.69782 1.63017 1.15060 1.21511 0.94997 0.94386 0.88921 1.67792 1.15298 1.21717 1.09113 1.22743 0.90015 0.93229 1.00735 1.22353 1.00977 0.98756 0.93106 1.18954 0.96433 0.98239 0.95404 1.21389 0.98227 0.95560 0.93958 1.22088 0.98872 1.00805 0.96159 1.23298 0.90234 0.90885 1.00442 1.68305 1.26229 1.13412 1.04598 1.19460 0.93943 0.96908 0.91656 1.23687 0.99459 1.02180 0.79994 1.21458 0.89208 0.89778 0.94084 0.91343 1.42381 1.45366 1.32342 1.14998 1.19266 1.17946 1.08828 0.90759 0.90996 1.24721 0.99257 0.98986 0.97803 1.69674 1.27616 1.27261 1.33302 0.86164 0.77174 0.79228 0.83894 1.20508 1.21944 1.22102 0.92152 0.93763 0.91280 0.92231 0.91354 0.81625 0.83804 0.83880 0.84106 0.81942 0.87269 0.93076 0.77834 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.73 37.16 0.32 -1.83 16 2 C -0.11 -1.87 3.40 -88.78 -0.30 -2.17 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.12 2.10 6.47 -3.06 -0.02 2.08 16 5 N -0.58 -11.37 3.33 -171.60 -0.57 -11.94 16 6 C 0.57 11.94 7.84 -12.30 -0.10 11.84 16 7 O -0.51 -11.64 15.54 5.32 0.08 -11.56 16 8 C 0.16 2.89 6.78 -82.55 -0.56 2.33 16 9 N -0.43 -7.18 6.55 -9.55 -0.06 -7.25 16 10 C 0.08 1.01 11.12 -17.66 -0.20 0.82 16 11 C -0.13 -1.44 9.93 -38.94 -0.39 -1.83 16 12 C -0.08 -1.07 5.75 -106.79 -0.61 -1.69 16 13 C -0.07 -0.61 9.94 -39.25 -0.39 -1.00 16 14 C -0.16 -1.40 10.03 -39.72 -0.40 -1.80 16 15 C 0.13 1.48 11.14 -17.39 -0.19 1.29 16 16 N -0.42 -7.04 8.49 -10.75 -0.09 -7.13 16 17 C 0.11 1.77 6.61 -84.62 -0.56 1.21 16 18 C 0.07 1.35 5.65 -2.53 -0.01 1.34 16 19 C 0.17 3.23 3.44 -65.78 -0.23 3.01 16 20 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 21 N -0.71 -17.28 4.74 -51.35 -0.24 -17.52 16 22 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 26 Si 0.90 22.24 29.55 -169.99 -5.02 17.21 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.34 6.37 -51.93 -0.33 1.01 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.33 7.78 -51.93 -0.40 0.92 16 35 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 2.27 5.89 -51.93 -0.31 1.96 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.39 10.22 6.09 -40.82 -0.25 9.98 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -35.22 356.32 -9.18 -44.40 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.49 Total: 9.18 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -3.88 Total: 6.63 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -0.24 Total: -71.24 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.22 -9.18 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054747269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.701 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds