Wall clock time and date at job start Tue Mar 31 2020 14:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.91437 * 2 1 4 4 C 1.54917 * 111.00301 * 236.09885 * 2 1 3 5 5 N 1.47422 * 104.83074 * 204.91369 * 4 2 1 6 6 C 1.34776 * 125.64527 * 204.09182 * 5 4 2 7 7 O 1.21510 * 120.00285 * 0.02562 * 6 5 4 8 8 C 1.48239 * 119.99664 * 180.02562 * 6 5 4 9 9 C 1.40573 * 119.74226 * 179.72964 * 8 6 5 10 10 N 1.31269 * 120.56671 * 179.70317 * 9 8 6 11 11 C 1.33783 * 119.80116 * 0.56978 * 10 9 8 12 12 C 1.40548 * 120.99740 * 179.73126 * 11 10 9 13 13 C 1.36078 * 119.75110 * 179.97438 * 12 11 10 14 14 C 1.39469 * 121.02056 * 359.97438 * 13 12 11 15 15 C 1.35989 * 120.98259 * 0.04393 * 14 13 12 16 16 C 1.40822 * 119.69753 * 359.95851 * 15 14 13 17 17 N 1.32160 * 119.74762 * 0.02562 * 8 6 5 18 18 C 1.47020 * 108.70191 * 24.12901 * 5 4 2 19 19 C 1.54316 * 107.27568 * 358.94070 * 18 5 4 20 20 H 1.09003 * 110.72312 * 219.44382 * 19 18 5 21 21 N 1.46504 * 110.87562 * 96.23926 * 19 18 5 22 22 C 1.36932 * 119.99676 * 91.39103 * 21 19 18 23 23 H 1.07996 * 120.00395 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99606 * 180.02562 * 22 21 19 25 25 N 1.31625 * 120.00131 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00163 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46844 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47184 * 119.99471 * 26 24 22 29 29 H 1.48499 * 109.47314 * 239.99595 * 26 24 22 30 30 H 1.09004 * 109.47256 * 182.44591 * 1 2 3 31 31 H 1.08998 * 109.47483 * 302.44603 * 1 2 3 32 32 H 1.08999 * 109.47641 * 62.44790 * 1 2 3 33 33 H 1.08998 * 110.36726 * 323.75382 * 4 2 1 34 34 H 1.09005 * 110.36534 * 86.07904 * 4 2 1 35 35 H 1.08001 * 119.72146 * 359.97438 * 9 8 6 36 36 H 1.08005 * 120.12269 * 359.97438 * 12 11 10 37 37 H 1.08008 * 119.48868 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.51446 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.15259 * 179.97438 * 15 14 13 40 40 H 1.09000 * 109.88493 * 239.51822 * 18 5 4 41 41 H 1.09005 * 110.00581 * 118.43132 * 18 5 4 42 42 H 0.97002 * 119.99925 * 271.39448 * 21 19 18 43 43 H 0.96998 * 119.99828 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2430 -0.7734 6 6 4.4475 -1.5615 -1.5942 7 8 4.3004 -1.4997 -2.7988 8 6 5.7494 -1.9873 -1.0273 9 6 6.8084 -2.3237 -1.8884 10 7 7.9698 -2.6972 -1.4039 11 6 8.1455 -2.7698 -0.0796 12 6 9.3766 -3.1721 0.4662 13 6 9.5276 -3.2365 1.8170 14 6 8.4773 -2.9083 2.6741 15 6 7.2711 -2.5151 2.1845 16 6 7.0754 -2.4358 0.7922 17 7 5.9037 -2.0533 0.2836 18 6 3.4674 -1.2741 0.6959 19 6 2.0862 -0.8080 1.2022 20 1 2.1922 -0.1700 2.0796 21 7 1.2245 -1.9551 1.4988 22 6 1.2043 -2.4881 2.7600 23 1 1.8238 -2.0631 3.5359 24 6 0.3883 -3.5753 3.0410 25 7 -0.3664 -4.0935 2.0952 26 14 0.3612 -4.3030 4.7612 27 1 1.2931 -3.5448 5.6341 28 1 -1.0148 -4.2175 5.3131 29 1 0.7840 -5.7253 4.7037 30 1 -0.3634 -1.0268 0.0439 31 1 -0.3634 0.5513 0.8672 32 1 -0.3634 0.4753 -0.9111 33 1 1.4518 -1.6704 -1.4025 34 1 2.1559 -0.1719 -2.0838 35 1 6.6666 -2.2703 -2.9577 36 1 10.1998 -3.4291 -0.1841 37 1 10.4756 -3.5457 2.2320 38 1 8.6241 -2.9676 3.7424 39 1 6.4669 -2.2644 2.8605 40 1 4.2425 -0.5997 1.0598 41 1 3.6662 -2.2884 1.0421 42 1 0.6684 -2.3370 0.8019 43 1 -0.9369 -4.8530 2.2917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054749639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:00 Heat of formation + Delta-G solvation = 63.298219 kcal Electronic energy + Delta-G solvation = -27441.954721 eV Core-core repulsion = 23681.043475 eV Total energy + Delta-G solvation = -3760.911247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.65714 -39.74921 -37.93527 -37.22236 -35.11910 -33.92824 -32.39257 -31.09409 -30.78736 -30.44057 -27.75016 -26.75956 -25.57929 -24.40853 -23.79781 -22.44733 -22.16733 -20.19467 -19.29930 -18.50277 -18.43318 -17.56052 -16.86919 -16.01415 -15.94164 -15.59210 -15.13918 -14.86687 -14.60503 -14.51652 -14.24245 -13.91818 -13.69124 -13.13130 -13.02010 -12.69878 -12.33708 -12.09887 -12.07664 -12.00000 -11.98430 -11.81633 -11.73189 -11.47293 -11.12000 -10.95020 -10.73547 -10.43295 -10.27917 -10.18457 -9.90796 -9.65430 -9.25559 -9.19228 -8.95079 -8.81971 -8.28638 -7.05474 -5.84092 -3.13491 -0.13142 0.23944 1.66902 2.30734 3.01620 3.13393 3.38333 3.43842 3.46518 3.75990 3.88964 3.89673 4.05888 4.50946 4.52474 4.60214 4.73062 4.89224 5.00723 5.01050 5.16480 5.23513 5.35183 5.56228 5.59694 5.63135 5.68378 5.82543 5.82697 5.90046 5.96578 6.02011 6.08986 6.21482 6.29803 6.34710 6.39670 6.44675 6.59156 6.62865 6.84815 6.96407 7.00033 7.45635 7.64400 7.74818 8.21768 8.33918 9.45739 10.00643 10.35482 11.38233 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.004356 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.550135 B = 6427.025712 C = 8466.962396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.113 3.887 5 N -0.581 5.581 6 C 0.580 3.420 7 O -0.543 6.543 8 C 0.066 3.934 9 C 0.128 3.872 10 N -0.430 5.430 11 C 0.090 3.910 12 C -0.092 4.092 13 C -0.089 4.089 14 C -0.106 4.106 15 C -0.068 4.068 16 C 0.074 3.926 17 N -0.376 5.376 18 C 0.086 3.914 19 C 0.167 3.833 20 H 0.073 0.927 21 N -0.711 5.711 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.009 4.009 25 N -0.930 5.930 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.186 0.814 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.386 0.614 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.519 6.073 -2.204 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.009 4.009 5 N -0.311 5.311 6 C 0.365 3.635 7 O -0.421 6.421 8 C -0.090 4.090 9 C -0.047 4.047 10 N -0.143 5.143 11 C -0.035 4.035 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.126 4.126 15 C -0.087 4.087 16 C -0.052 4.052 17 N -0.094 5.094 18 C -0.039 4.039 19 C 0.055 3.945 20 H 0.091 0.909 21 N -0.352 5.352 22 C -0.373 4.373 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.203 0.797 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.222 0.778 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.587 5.991 -2.538 17.817 hybrid contribution -0.176 -0.766 0.763 1.095 sum 16.411 5.225 -1.775 17.314 Atomic orbital electron populations 1.21558 0.93252 1.03581 1.00548 1.22660 0.97065 0.98456 0.95420 0.90355 1.22381 0.82231 0.98680 0.97623 1.48319 1.11383 1.62593 1.08775 1.17255 0.82071 0.78693 0.85447 1.90772 1.82530 1.55321 1.13522 1.22442 0.96581 0.99620 0.90396 1.23947 0.87209 0.91266 1.02313 1.68821 1.22164 1.10934 1.12404 1.19809 0.95393 0.98244 0.90007 1.20788 0.95452 0.99492 0.95433 1.21088 0.99468 0.97370 0.93003 1.21043 0.92576 0.98171 1.00853 1.21006 0.98296 0.97166 0.92271 1.19722 0.89953 0.99866 0.95660 1.68951 1.20966 1.06914 1.12590 1.23391 1.00231 1.03110 0.77194 1.21315 0.88611 0.89885 0.94720 0.90935 1.42450 1.48596 1.33307 1.10834 1.19273 1.20333 1.10006 0.87735 0.90957 1.24732 0.99404 0.98822 0.97589 1.69665 1.30018 1.26336 1.31736 0.86151 0.77268 0.78865 0.84072 1.20507 1.21853 1.21954 0.90779 0.92293 0.93710 0.90755 0.90884 0.79699 0.84226 0.84625 0.84442 0.83573 0.91966 0.89768 0.77819 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.98 37.15 0.33 -1.71 16 2 C -0.12 -1.80 3.51 -88.47 -0.31 -2.11 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.11 1.85 6.34 -2.53 -0.02 1.83 16 5 N -0.58 -10.11 3.33 -171.48 -0.57 -10.68 16 6 C 0.58 10.18 7.85 -12.15 -0.10 10.09 16 7 O -0.54 -10.28 16.58 5.36 0.09 -10.19 16 8 C 0.07 1.05 6.73 -82.73 -0.56 0.50 16 9 C 0.13 1.81 10.75 -16.91 -0.18 1.63 16 10 N -0.43 -6.01 10.45 -10.52 -0.11 -6.12 16 11 C 0.09 1.20 6.60 -84.70 -0.56 0.64 16 12 C -0.09 -0.92 9.98 -39.49 -0.39 -1.32 16 13 C -0.09 -0.70 9.95 -39.90 -0.40 -1.10 16 14 C -0.11 -0.91 9.95 -39.93 -0.40 -1.31 16 15 C -0.07 -0.78 9.99 -39.41 -0.39 -1.17 16 16 C 0.07 1.05 6.60 -84.79 -0.56 0.49 16 17 N -0.38 -5.96 6.96 -7.39 -0.05 -6.02 16 18 C 0.09 1.52 5.14 -3.07 -0.02 1.51 16 19 C 0.17 3.07 3.38 -66.10 -0.22 2.84 16 20 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 21 N -0.71 -16.40 4.47 -51.65 -0.23 -16.63 16 22 C -0.24 -6.28 9.96 -15.06 -0.15 -6.43 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H 0.07 1.36 6.26 -51.93 -0.33 1.04 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 34 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 35 H 0.19 2.27 7.62 -52.49 -0.40 1.87 16 36 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.06 1.01 7.42 -51.93 -0.39 0.63 16 41 H 0.08 1.72 7.45 -51.93 -0.39 1.33 16 42 H 0.39 9.60 6.24 -40.82 -0.25 9.34 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -31.21 358.87 -9.29 -40.50 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.51 Total: 9.46 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -4.01 Total: 4.03 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.24 Total: -65.75 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.21 -9.29 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054749639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.796 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds