Wall clock time and date at job start Tue Mar 31 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.78234 * 2 1 4 4 C 1.54329 * 110.71910 * 236.75815 * 2 1 3 5 5 N 1.47020 * 107.40090 * 219.52389 * 4 2 1 6 6 C 1.34778 * 125.64631 * 178.82699 * 5 4 2 7 7 O 1.21549 * 120.00160 * 0.02562 * 6 5 4 8 8 C 1.47910 * 120.00278 * 179.97438 * 6 5 4 9 9 N 1.32383 * 120.63392 * 354.59047 * 8 6 5 10 10 N 1.28086 * 123.18241 * 179.97438 * 9 8 6 11 11 C 1.31801 * 123.49660 * 359.97438 * 10 9 8 12 12 C 1.40403 * 119.13531 * 0.02562 * 11 10 9 13 13 C 1.40230 * 122.73285 * 179.97438 * 12 11 10 14 14 C 1.36260 * 119.37004 * 180.02562 * 13 12 11 15 15 C 1.39385 * 121.07124 * 359.97438 * 14 13 12 16 16 C 1.36361 * 121.08764 * 0.02711 * 15 14 13 17 17 C 1.39837 * 119.41939 * 359.69645 * 16 15 14 18 18 C 1.47424 * 108.70745 * 358.86368 * 5 4 2 19 19 C 1.54906 * 104.83059 * 24.12737 * 18 5 4 20 20 H 1.08996 * 111.00780 * 81.10415 * 19 18 5 21 21 N 1.46500 * 111.00519 * 204.91762 * 19 18 5 22 22 C 1.36941 * 120.00073 * 273.54362 * 21 19 18 23 23 H 1.08001 * 119.99669 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00203 * 179.97438 * 22 21 19 25 25 N 1.31627 * 119.99932 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00219 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47350 * 60.00159 * 26 24 22 28 28 H 1.48508 * 109.47395 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47321 * 300.00329 * 26 24 22 30 30 H 1.08995 * 109.47484 * 181.78883 * 1 2 3 31 31 H 1.09009 * 109.46667 * 301.78599 * 1 2 3 32 32 H 1.08999 * 109.47306 * 61.78500 * 1 2 3 33 33 H 1.09001 * 109.87789 * 100.02968 * 4 2 1 34 34 H 1.08996 * 109.87946 * 339.01734 * 4 2 1 35 35 H 1.07995 * 120.43063 * 179.97438 * 11 10 9 36 36 H 1.08000 * 120.32085 * 0.04505 * 13 12 11 37 37 H 1.08001 * 119.46947 * 179.97438 * 14 13 12 38 38 H 1.07999 * 119.45249 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.28719 * 179.97438 * 16 15 14 40 40 H 1.08997 * 110.36822 * 142.96783 * 18 5 4 41 41 H 1.09001 * 110.36674 * 265.18051 * 18 5 4 42 42 H 0.96995 * 119.99955 * 93.55197 * 21 19 18 43 43 H 0.97005 * 120.00175 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 3.2437 -1.5536 -0.7416 6 6 3.9876 -2.3885 -1.4939 7 8 3.7112 -2.5606 -2.6650 8 6 5.1411 -3.0944 -0.8949 9 7 5.5192 -2.8360 0.3472 10 7 6.5094 -3.4181 0.9140 11 6 7.2520 -4.3319 0.3220 12 6 6.9579 -4.7000 -1.0006 13 6 7.6981 -5.6624 -1.7023 14 6 7.3525 -5.9668 -2.9847 15 6 6.2763 -5.3379 -3.6084 16 6 5.5355 -4.3976 -2.9554 17 6 5.8575 -4.0640 -1.6361 18 6 3.4656 -1.2542 0.6848 19 6 2.0832 -0.7973 1.2138 20 1 1.4482 -1.6542 1.4386 21 7 2.2296 0.0665 2.3879 22 6 2.3265 -0.4863 3.6370 23 1 2.2955 -1.5593 3.7564 24 6 2.4657 0.3321 4.7494 25 7 2.5040 1.6398 4.6037 26 14 2.5987 -0.4220 6.4531 27 1 3.7877 -1.3099 6.5100 28 1 2.7379 0.6579 7.4630 29 1 1.3757 -1.2136 6.7409 30 1 -0.3634 -1.0271 0.0321 31 1 -0.3633 0.5414 0.8736 32 1 -0.3634 0.4858 -0.9055 33 1 2.3740 -0.1025 -1.9977 34 1 1.3119 -1.4739 -1.5792 35 1 8.0765 -4.7910 0.8472 36 1 8.5338 -6.1579 -1.2307 37 1 7.9217 -6.7075 -3.5268 38 1 6.0252 -5.5996 -4.6257 39 1 4.7045 -3.9180 -3.4513 40 1 3.7974 -2.1481 1.2129 41 1 4.1988 -0.4552 0.7951 42 1 2.2577 1.0301 2.2805 43 1 2.6009 2.2118 5.3811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054886727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:26 Heat of formation + Delta-G solvation = 71.793528 kcal Electronic energy + Delta-G solvation = -27276.084739 eV Core-core repulsion = 23515.541876 eV Total energy + Delta-G solvation = -3760.542862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66036 -39.68351 -38.25695 -37.61838 -34.09529 -33.61728 -32.49741 -32.00209 -30.71449 -30.50364 -27.53347 -26.90468 -25.26353 -24.49361 -23.88159 -23.00606 -21.61325 -20.04563 -19.82645 -18.59274 -18.27094 -17.13280 -16.99451 -16.28303 -16.08067 -15.84823 -15.23431 -14.88619 -14.41555 -14.36104 -14.11430 -13.78618 -13.54016 -13.14703 -12.95348 -12.82214 -12.79135 -12.70084 -12.55756 -12.09899 -11.82064 -11.60691 -11.35008 -11.05091 -10.89351 -10.77288 -10.62180 -10.58664 -10.21098 -9.92962 -9.78504 -9.67126 -9.62713 -9.61237 -8.91028 -8.75408 -8.38546 -7.00383 -5.77395 -3.07394 -0.22311 0.38208 1.35446 2.49232 2.90150 2.98351 3.46884 3.51178 3.52479 3.77155 3.80639 4.14503 4.20081 4.33040 4.44538 4.59429 4.72849 4.77251 4.94573 4.97727 5.17576 5.21889 5.24880 5.36278 5.50387 5.58276 5.63803 5.71300 5.77471 5.89322 5.92680 5.93919 6.05297 6.08930 6.10623 6.25072 6.31995 6.42858 6.48598 6.53385 6.62030 6.72705 6.95416 7.63129 7.72217 8.07339 8.40150 8.62942 9.52329 10.05225 10.40491 11.44672 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.003630 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.616301 B = 7711.467424 C = 9478.511311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.115 3.885 5 N -0.583 5.583 6 C 0.585 3.415 7 O -0.545 6.545 8 C 0.070 3.930 9 N -0.210 5.210 10 N -0.260 5.260 11 C 0.098 3.902 12 C -0.087 4.087 13 C -0.096 4.096 14 C -0.099 4.099 15 C -0.105 4.105 16 C -0.090 4.090 17 C -0.046 4.046 18 C 0.075 3.925 19 C 0.175 3.825 20 H 0.064 0.936 21 N -0.708 5.708 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.008 4.008 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.180 0.820 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.174 0.826 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.387 0.613 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 -13.627 -16.891 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.313 5.313 6 C 0.370 3.630 7 O -0.424 6.424 8 C -0.087 4.087 9 N -0.046 5.046 10 N -0.091 5.091 11 C -0.077 4.077 12 C -0.094 4.094 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.125 4.125 16 C -0.109 4.109 17 C -0.054 4.054 18 C -0.050 4.050 19 C 0.062 3.938 20 H 0.081 0.919 21 N -0.348 5.348 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.204 4.204 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.197 0.803 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.191 0.809 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.221 0.779 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.150 -12.854 -15.858 21.629 hybrid contribution 0.710 -0.956 -0.233 1.213 sum 7.860 -13.809 -16.091 22.614 Atomic orbital electron populations 1.21655 0.93808 1.01807 1.01818 1.22553 0.96475 0.99893 0.94509 0.89561 1.22099 0.87016 0.94394 0.97263 1.48446 1.28496 1.40998 1.13389 1.17083 0.81379 0.79443 0.85048 1.90580 1.70906 1.65325 1.15601 1.22961 0.96965 0.95760 0.93049 1.73219 1.06664 1.17671 1.07064 1.72816 1.00870 1.06009 1.29440 1.24881 0.98214 0.93169 0.91398 1.18934 0.96337 0.98469 0.95696 1.20941 0.99357 0.96468 0.94846 1.21144 0.96754 0.99012 0.94918 1.21251 0.94876 0.95704 1.00643 1.22029 1.00425 0.95828 0.92581 1.18602 0.94964 0.95893 0.95937 1.23890 1.01567 1.02506 0.77086 1.21486 0.92076 0.93561 0.86645 0.91851 1.42247 1.86797 1.05083 1.00685 1.19183 1.42714 0.91872 0.83607 0.91065 1.24727 1.02445 0.95329 0.97934 1.69652 1.56793 1.02066 1.29396 0.86274 0.77991 0.77825 0.84152 1.21039 1.21728 1.21267 0.92833 0.91316 0.93181 0.91463 0.91142 0.80307 0.84242 0.85051 0.84936 0.80910 0.88858 0.90660 0.77860 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.14 37.16 0.34 -1.54 16 2 C -0.11 -1.82 3.19 -88.65 -0.28 -2.10 16 3 H 0.09 1.40 8.00 -51.93 -0.42 0.99 16 4 C 0.11 1.72 6.46 -3.06 -0.02 1.70 16 5 N -0.58 -9.89 3.33 -171.61 -0.57 -10.47 16 6 C 0.58 9.94 7.82 -12.30 -0.10 9.84 16 7 O -0.54 -9.39 13.92 5.32 0.07 -9.32 16 8 C 0.07 1.14 6.84 -82.42 -0.56 0.57 16 9 N -0.21 -3.70 7.88 33.56 0.26 -3.44 16 10 N -0.26 -4.19 11.42 30.90 0.35 -3.84 16 11 C 0.10 1.14 11.20 -16.75 -0.19 0.95 16 12 C -0.09 -0.99 5.75 -106.85 -0.61 -1.61 16 13 C -0.10 -0.76 9.84 -39.55 -0.39 -1.15 16 14 C -0.10 -0.71 9.95 -39.87 -0.40 -1.11 16 15 C -0.11 -0.91 9.95 -39.83 -0.40 -1.30 16 16 C -0.09 -1.07 9.27 -39.66 -0.37 -1.44 16 17 C -0.05 -0.64 5.77 -106.57 -0.61 -1.25 16 18 C 0.07 1.42 5.57 -2.53 -0.01 1.40 16 19 C 0.17 3.40 3.14 -65.65 -0.21 3.20 16 20 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 21 N -0.71 -17.11 5.28 -51.22 -0.27 -17.38 16 22 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 26 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 35 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.17 2.26 5.12 -52.49 -0.27 1.99 16 40 H 0.09 1.89 6.11 -51.93 -0.32 1.57 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.39 9.89 7.72 -40.82 -0.31 9.58 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.35 356.96 -8.62 -40.96 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.49 Total: 8.59 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -4.06 Total: -0.90 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.50 Total: -62.03 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.35 -8.62 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054886727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.754 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds