Wall clock time and date at job start Tue Mar 31 2020 14:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.88424 * 2 1 4 4 C 1.54907 * 111.00529 * 123.92216 * 2 1 3 5 5 N 1.47744 * 104.84421 * 155.16847 * 4 2 1 6 6 C 1.34773 * 125.82338 * 155.83028 * 5 4 2 7 7 O 1.21540 * 120.00322 * 359.93150 * 6 5 4 8 8 C 1.47920 * 119.99785 * 179.97438 * 6 5 4 9 9 N 1.32374 * 120.63635 * 354.75152 * 8 6 5 10 10 N 1.28090 * 123.18075 * 179.97438 * 9 8 6 11 11 C 1.31797 * 123.49754 * 0.02562 * 10 9 8 12 12 C 1.40409 * 119.13834 * 359.97438 * 11 10 9 13 13 C 1.40224 * 122.73966 * 179.97438 * 12 11 10 14 14 C 1.36252 * 119.37249 * 180.02562 * 13 12 11 15 15 C 1.39375 * 121.07511 * 0.02562 * 14 13 12 16 16 C 1.36367 * 121.08626 * 0.02562 * 15 14 13 17 17 C 1.39839 * 119.41761 * 359.70757 * 16 15 14 18 18 C 1.47030 * 108.52679 * 335.75312 * 5 4 2 19 19 C 1.54323 * 107.40117 * 1.18258 * 18 5 4 20 20 H 1.09002 * 110.71669 * 263.75287 * 19 18 5 21 21 N 1.46492 * 110.72010 * 140.48107 * 19 18 5 22 22 C 1.36932 * 120.00288 * 86.45322 * 21 19 18 23 23 H 1.07998 * 120.00146 * 359.97438 * 22 21 19 24 24 C 1.38819 * 120.00478 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99624 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00410 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47007 * 359.97438 * 26 24 22 28 28 H 1.48508 * 109.47039 * 119.99485 * 26 24 22 29 29 H 1.48494 * 109.47131 * 239.99626 * 26 24 22 30 30 H 1.08992 * 109.47081 * 183.88039 * 1 2 3 31 31 H 1.08995 * 109.46855 * 303.88070 * 1 2 3 32 32 H 1.08993 * 109.47008 * 63.88002 * 1 2 3 33 33 H 1.09003 * 110.36703 * 273.92419 * 4 2 1 34 34 H 1.09007 * 110.36560 * 36.13492 * 4 2 1 35 35 H 1.07996 * 120.43213 * 179.97438 * 11 10 9 36 36 H 1.08006 * 120.31567 * 0.04310 * 13 12 11 37 37 H 1.08001 * 119.46491 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.46196 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.29389 * 179.97438 * 16 15 14 40 40 H 1.09002 * 109.87968 * 241.68360 * 18 5 4 41 41 H 1.08999 * 109.87976 * 120.67090 * 18 5 4 42 42 H 0.96999 * 119.99797 * 266.44609 * 21 19 18 43 43 H 0.96992 * 120.00526 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8070 1.2000 5 7 3.4310 -1.2426 0.7730 6 6 4.4539 -1.5601 1.5911 7 8 4.3099 -1.4983 2.7963 8 6 5.7521 -1.9828 1.0221 9 7 5.8931 -2.1535 -0.2830 10 7 6.9939 -2.5176 -0.8275 11 6 8.0965 -2.7599 -0.1475 12 6 8.0840 -2.6162 1.2492 13 6 9.2127 -2.8546 2.0463 14 6 9.1233 -2.6945 3.3964 15 6 7.9292 -2.2985 3.9964 16 6 6.8124 -2.0593 3.2514 17 6 6.8686 -2.2082 1.8621 18 6 3.4675 -1.2738 -0.6965 19 6 2.0862 -0.8074 -1.2025 20 1 1.4468 -1.6626 -1.4216 21 7 2.2287 0.0505 -2.3814 22 6 2.3034 -0.5079 -3.6295 23 1 2.2576 -1.5807 -3.7448 24 6 2.4390 0.3050 -4.7466 25 7 2.4952 1.6124 -4.6062 26 14 2.5415 -0.4567 -6.4492 27 1 2.4558 -1.9350 -6.3360 28 1 1.4187 0.0423 -7.2832 29 1 3.8321 -0.0831 -7.0816 30 1 -0.3633 -1.0252 0.0695 31 1 -0.3633 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 2.1560 -0.1727 2.0836 34 1 1.4508 -1.6698 1.4031 35 1 8.9981 -3.0650 -0.6579 36 1 10.1442 -3.1620 1.5943 37 1 9.9918 -2.8773 4.0117 38 1 7.8877 -2.1792 5.0689 39 1 5.8936 -1.7534 3.7297 40 1 3.6651 -2.2890 -1.0409 41 1 4.2429 -0.6008 -1.0624 42 1 2.2701 1.0140 -2.2779 43 1 2.5896 2.1805 -5.3866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054886728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:29 Heat of formation + Delta-G solvation = 70.625072 kcal Electronic energy + Delta-G solvation = -27290.929622 eV Core-core repulsion = 23530.336091 eV Total energy + Delta-G solvation = -3760.593530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63244 -39.66241 -38.23324 -37.62031 -34.08722 -33.59050 -32.48827 -31.98120 -30.69605 -30.49467 -27.52608 -26.88839 -25.24918 -24.46833 -23.89230 -22.97828 -21.61665 -19.99665 -19.87706 -18.56021 -18.24023 -17.07200 -17.02188 -16.28930 -15.95206 -15.89220 -15.24898 -14.86743 -14.46857 -14.32999 -14.09987 -13.82344 -13.50552 -13.19488 -13.07731 -12.79708 -12.61451 -12.56086 -12.45113 -12.18870 -11.81654 -11.50242 -11.40666 -11.08999 -10.91242 -10.75240 -10.65082 -10.56054 -10.17345 -9.90038 -9.81140 -9.69095 -9.61568 -9.61143 -8.91408 -8.73445 -8.36838 -7.01092 -5.77494 -3.07428 -0.20176 0.40492 1.37355 2.51252 2.90990 3.00233 3.45605 3.52107 3.53834 3.79502 3.82477 4.16577 4.21973 4.34831 4.46498 4.59848 4.74101 4.78737 4.95357 4.98849 5.18185 5.22304 5.25651 5.38739 5.52248 5.60869 5.64014 5.70814 5.76619 5.90418 5.93486 5.95909 6.01975 6.09180 6.12392 6.24628 6.31508 6.44808 6.48963 6.55235 6.63966 6.70161 6.98083 7.64020 7.73779 8.08373 8.39873 8.65521 9.52226 10.05387 10.40343 11.44753 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003656 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.164421 B = 7657.421322 C = 9398.512440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.584 5.584 6 C 0.586 3.414 7 O -0.546 6.546 8 C 0.069 3.931 9 N -0.209 5.209 10 N -0.259 5.259 11 C 0.097 3.903 12 C -0.087 4.087 13 C -0.096 4.096 14 C -0.099 4.099 15 C -0.105 4.105 16 C -0.090 4.090 17 C -0.046 4.046 18 C 0.081 3.919 19 C 0.174 3.826 20 H 0.066 0.934 21 N -0.710 5.710 22 C -0.241 4.241 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.180 0.820 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.174 0.826 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.386 0.614 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -8.317 17.699 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.010 4.010 5 N -0.314 5.314 6 C 0.372 3.628 7 O -0.425 6.425 8 C -0.088 4.088 9 N -0.045 5.045 10 N -0.091 5.091 11 C -0.077 4.077 12 C -0.095 4.095 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.125 4.125 16 C -0.109 4.109 17 C -0.054 4.054 18 C -0.044 4.044 19 C 0.062 3.938 20 H 0.084 0.916 21 N -0.350 5.350 22 C -0.372 4.372 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.204 1.204 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.197 0.803 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.191 0.809 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.221 0.779 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.483 -8.331 16.561 20.823 hybrid contribution 1.176 -0.140 0.292 1.220 sum 10.660 -8.471 16.853 21.666 Atomic orbital electron populations 1.21607 0.93695 1.01588 1.02166 1.22649 0.96414 0.99838 0.94576 0.89714 1.22452 0.81946 0.98459 0.98109 1.48531 1.11307 1.62312 1.09263 1.17076 0.81940 0.78475 0.85321 1.90575 1.82158 1.56187 1.13556 1.22950 0.94929 0.98739 0.92226 1.73193 1.16200 1.06048 1.09058 1.72810 0.95453 1.09044 1.31773 1.24884 0.99103 0.92876 0.90815 1.18932 0.94594 1.00814 0.95139 1.20936 0.97145 0.99680 0.93835 1.21134 0.98260 0.97508 0.94958 1.21247 0.92519 0.97847 1.00868 1.22031 1.01126 0.95837 0.91889 1.18611 0.92489 0.98795 0.95490 1.23567 1.02412 1.02760 0.75668 1.21332 0.91876 0.93740 0.86852 0.91575 1.42335 1.86842 1.05215 1.00567 1.19291 1.42447 0.91992 0.83485 0.90867 1.24739 1.02526 0.95346 0.97949 1.69667 1.56985 1.02278 1.28974 0.86123 0.77159 0.78320 0.84632 1.20408 1.21944 1.21842 0.92788 0.93172 0.91207 0.90556 0.90982 0.80318 0.84253 0.85062 0.84948 0.80916 0.90972 0.89956 0.77925 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.31 37.16 0.35 -1.50 16 2 C -0.11 -1.82 3.25 -88.47 -0.29 -2.11 16 3 H 0.08 1.42 8.00 -51.93 -0.42 1.01 16 4 C 0.11 1.66 6.40 -2.35 -0.02 1.65 16 5 N -0.58 -9.94 3.34 -171.34 -0.57 -10.51 16 6 C 0.59 10.06 7.82 -12.30 -0.10 9.96 16 7 O -0.55 -9.46 13.86 5.33 0.07 -9.39 16 8 C 0.07 1.14 6.85 -82.42 -0.56 0.58 16 9 N -0.21 -3.74 8.09 33.56 0.27 -3.46 16 10 N -0.26 -4.25 11.41 30.90 0.35 -3.90 16 11 C 0.10 1.17 11.20 -16.75 -0.19 0.98 16 12 C -0.09 -1.02 5.75 -106.85 -0.61 -1.64 16 13 C -0.10 -0.78 9.84 -39.55 -0.39 -1.17 16 14 C -0.10 -0.74 9.95 -39.87 -0.40 -1.13 16 15 C -0.11 -0.93 9.95 -39.83 -0.40 -1.33 16 16 C -0.09 -1.09 9.27 -39.66 -0.37 -1.46 16 17 C -0.05 -0.65 5.77 -106.57 -0.61 -1.26 16 18 C 0.08 1.54 5.16 -3.06 -0.02 1.53 16 19 C 0.17 3.36 3.06 -66.10 -0.20 3.16 16 20 H 0.07 1.28 8.02 -51.93 -0.42 0.86 16 21 N -0.71 -17.16 5.17 -51.66 -0.27 -17.43 16 22 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 26 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.07 0.97 7.98 -51.92 -0.41 0.55 16 35 H 0.18 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.17 2.30 5.12 -52.49 -0.27 2.03 16 40 H 0.07 1.41 7.44 -51.93 -0.39 1.02 16 41 H 0.08 1.78 7.46 -51.93 -0.39 1.40 16 42 H 0.39 9.97 7.71 -40.82 -0.31 9.66 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -32.54 357.37 -8.63 -41.17 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.52 Total: 8.60 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -4.05 Total: -0.79 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.51 Total: -62.30 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.54 -8.63 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054886728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.793 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds