Wall clock time and date at job start Tue Mar 31 2020 14:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.91188 * 2 1 4 4 C 1.54913 * 111.00477 * 236.10195 * 2 1 3 5 5 N 1.47422 * 104.82785 * 204.91324 * 4 2 1 6 6 C 1.34780 * 125.64746 * 204.15986 * 5 4 2 7 7 O 1.21548 * 119.99638 * 359.97438 * 6 5 4 8 8 C 1.47908 * 120.00217 * 179.97438 * 6 5 4 9 9 N 1.32374 * 120.63348 * 354.74491 * 8 6 5 10 10 N 1.28097 * 123.17592 * 180.02562 * 9 8 6 11 11 C 1.31794 * 123.49956 * 0.02562 * 10 9 8 12 12 C 1.40403 * 119.14038 * 359.97438 * 11 10 9 13 13 C 1.40233 * 122.74284 * 180.02562 * 12 11 10 14 14 C 1.36260 * 119.36730 * 179.15371 * 13 12 11 15 15 C 1.39384 * 121.07006 * 0.86414 * 14 13 12 16 16 C 1.36358 * 121.09042 * 359.40223 * 15 14 13 17 17 C 1.39836 * 119.42138 * 0.02562 * 16 15 14 18 18 C 1.47018 * 108.70734 * 24.12775 * 5 4 2 19 19 C 1.54330 * 107.26984 * 358.93853 * 18 5 4 20 20 H 1.09000 * 110.71651 * 219.44446 * 19 18 5 21 21 N 1.46498 * 110.72095 * 96.17475 * 19 18 5 22 22 C 1.36940 * 120.00164 * 86.45321 * 21 19 18 23 23 H 1.07997 * 120.00141 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99855 * 180.02562 * 22 21 19 25 25 N 1.31622 * 119.99883 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 119.99895 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47519 * 59.99632 * 26 24 22 28 28 H 1.48501 * 109.47253 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47181 * 299.99300 * 26 24 22 30 30 H 1.08999 * 109.47012 * 296.10019 * 1 2 3 31 31 H 1.09004 * 109.47046 * 56.09623 * 1 2 3 32 32 H 1.09001 * 109.46784 * 176.09835 * 1 2 3 33 33 H 1.08999 * 110.36792 * 86.07111 * 4 2 1 34 34 H 1.08996 * 110.45622 * 323.79749 * 4 2 1 35 35 H 1.08004 * 120.42989 * 179.97438 * 11 10 9 36 36 H 1.08001 * 120.31326 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.46719 * 180.28836 * 14 13 12 38 38 H 1.08001 * 119.45405 * 179.42618 * 15 14 13 39 39 H 1.08006 * 120.29171 * 179.97438 * 16 15 14 40 40 H 1.09002 * 109.88562 * 239.52421 * 18 5 4 41 41 H 1.08996 * 109.88870 * 118.35467 * 18 5 4 42 42 H 0.96999 * 119.99807 * 266.45810 * 21 19 18 43 43 H 0.97002 * 119.99804 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4272 -1.2429 -0.7734 6 6 4.4482 -1.5601 -1.5940 7 8 4.3012 -1.4978 -2.7990 8 6 5.7475 -1.9840 -1.0284 9 7 5.9550 -1.9573 0.2787 10 7 7.0601 -2.3126 0.8203 11 6 8.1018 -2.7396 0.1352 12 6 8.0149 -2.8167 -1.2640 13 6 9.0759 -3.2603 -2.0666 14 6 8.9105 -3.3241 -3.4176 15 6 7.7112 -2.9391 -4.0145 16 6 6.6613 -2.4978 -3.2646 17 6 6.7909 -2.4301 -1.8739 18 6 3.4675 -1.2740 0.6959 19 6 2.0862 -0.8078 1.2022 20 1 2.1923 -0.1699 2.0796 21 7 1.2269 -1.9573 1.4962 22 6 1.2817 -2.5562 2.7265 23 1 1.9586 -2.1814 3.4799 24 6 0.4679 -3.6457 3.0049 25 7 -0.3568 -4.1029 2.0865 26 14 0.5420 -4.4622 4.6833 27 1 0.1871 -3.4721 5.7316 28 1 -0.4186 -5.5938 4.7263 29 1 1.9163 -4.9696 4.9267 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 2.1559 -0.1719 -2.0837 34 1 1.4526 -1.6703 -1.4043 35 1 9.0106 -3.0265 0.6434 36 1 10.0107 -3.5611 -1.6170 37 1 9.7250 -3.6699 -4.0368 38 1 7.6117 -2.9915 -5.0886 39 1 5.7380 -2.2023 -3.7406 40 1 4.2426 -0.5996 1.0599 41 1 3.6651 -2.2892 1.0400 42 1 0.6192 -2.2943 0.8194 43 1 -0.9257 -4.8640 2.2812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054886729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:32 Heat of formation + Delta-G solvation = 73.359586 kcal Electronic energy + Delta-G solvation = -27490.895829 eV Core-core repulsion = 23730.420876 eV Total energy + Delta-G solvation = -3760.474953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61724 -39.65028 -38.21886 -37.65714 -33.99501 -33.54260 -32.37671 -31.96983 -30.59067 -30.36874 -27.71685 -26.82991 -25.19651 -24.45345 -23.77747 -23.00232 -22.05537 -19.93817 -19.25066 -18.55454 -18.23472 -17.48884 -16.80503 -16.21081 -15.96562 -15.73487 -15.07203 -14.84703 -14.54198 -14.35051 -14.16443 -13.82399 -13.65250 -13.08327 -12.97756 -12.77742 -12.68579 -12.50416 -12.26871 -11.97284 -11.76058 -11.46459 -11.36658 -11.08776 -10.85471 -10.73644 -10.68144 -10.39981 -10.24230 -9.90385 -9.78555 -9.63109 -9.60066 -9.56632 -8.92947 -8.71534 -8.28346 -6.99827 -5.77982 -3.07192 -0.18768 0.41264 1.39595 2.53312 2.98120 3.06014 3.45571 3.50145 3.51054 3.81032 3.84734 4.17307 4.24574 4.36964 4.48310 4.59093 4.75950 4.80161 4.97856 5.01993 5.22530 5.27501 5.35259 5.40088 5.53588 5.60333 5.67228 5.75300 5.85293 5.88808 5.96775 6.03231 6.10755 6.15282 6.26152 6.31891 6.38090 6.46097 6.48404 6.62458 6.68578 6.89366 6.96649 7.71582 7.73580 8.15946 8.40340 8.64432 9.52208 10.06569 10.41562 11.44309 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013830 B = 0.003681 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.085526 B = 7604.127716 C = 8799.486823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.113 3.887 5 N -0.576 5.576 6 C 0.584 3.416 7 O -0.546 6.546 8 C 0.075 3.925 9 N -0.214 5.214 10 N -0.263 5.263 11 C 0.096 3.904 12 C -0.087 4.087 13 C -0.097 4.097 14 C -0.098 4.098 15 C -0.106 4.106 16 C -0.088 4.088 17 C -0.046 4.046 18 C 0.081 3.919 19 C 0.169 3.831 20 H 0.072 0.928 21 N -0.712 5.712 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.175 0.825 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.386 0.614 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.275 5.325 -11.213 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.009 4.009 5 N -0.306 5.306 6 C 0.370 3.630 7 O -0.425 6.425 8 C -0.083 4.083 9 N -0.050 5.050 10 N -0.094 5.094 11 C -0.078 4.078 12 C -0.094 4.094 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.125 4.125 16 C -0.107 4.107 17 C -0.054 4.054 18 C -0.045 4.045 19 C 0.056 3.944 20 H 0.090 0.910 21 N -0.353 5.353 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.196 0.804 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.191 0.809 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.222 0.778 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.528 5.637 -10.070 20.158 hybrid contribution 0.712 -1.196 -0.585 1.509 sum 17.239 4.441 -10.655 20.747 Atomic orbital electron populations 1.21544 0.93231 1.03005 1.01041 1.22636 0.97027 0.98520 0.95253 0.90172 1.22402 0.82158 0.98705 0.97637 1.48358 1.11284 1.61946 1.08971 1.17047 0.81983 0.78648 0.85361 1.90579 1.82349 1.56000 1.13585 1.22955 0.95347 0.97873 0.92079 1.73126 1.13536 1.08978 1.09368 1.72748 0.95932 1.08730 1.32019 1.24834 0.99295 0.92854 0.90810 1.18924 0.94678 1.00714 0.95103 1.20930 0.97762 0.99236 0.93801 1.21142 0.97833 0.97790 0.94993 1.21253 0.92887 0.97466 1.00901 1.22049 1.01409 0.95403 0.91879 1.18614 0.92807 0.98482 0.95510 1.23484 1.00697 1.03538 0.76754 1.21313 0.88550 0.89848 0.94657 0.91007 1.42445 1.45388 1.32802 1.14710 1.19212 1.18230 1.09318 0.90545 0.90949 1.24723 0.99063 0.98884 0.97903 1.69648 1.27469 1.27632 1.33254 0.86278 0.77194 0.78890 0.83890 1.21194 1.21802 1.21225 0.91980 0.93662 0.91163 0.90853 0.90646 0.80376 0.84279 0.85060 0.84917 0.80859 0.91243 0.89686 0.77830 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.85 37.16 0.33 -1.71 16 2 C -0.11 -1.81 3.51 -88.47 -0.31 -2.12 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.11 1.87 6.35 -2.53 -0.02 1.85 16 5 N -0.58 -10.35 3.33 -171.61 -0.57 -10.92 16 6 C 0.58 10.50 7.82 -12.30 -0.10 10.41 16 7 O -0.55 -10.03 13.84 5.32 0.07 -9.96 16 8 C 0.07 1.26 6.85 -82.43 -0.56 0.70 16 9 N -0.21 -3.75 8.09 33.56 0.27 -3.47 16 10 N -0.26 -4.14 11.41 30.90 0.35 -3.79 16 11 C 0.10 1.13 11.20 -16.75 -0.19 0.94 16 12 C -0.09 -1.02 5.75 -106.85 -0.61 -1.63 16 13 C -0.10 -0.80 9.84 -39.54 -0.39 -1.19 16 14 C -0.10 -0.75 9.95 -39.87 -0.40 -1.15 16 15 C -0.11 -0.98 9.95 -39.83 -0.40 -1.38 16 16 C -0.09 -1.12 9.27 -39.66 -0.37 -1.49 16 17 C -0.05 -0.67 5.77 -106.57 -0.61 -1.28 16 18 C 0.08 1.52 5.16 -3.06 -0.02 1.50 16 19 C 0.17 3.23 3.37 -66.10 -0.22 3.00 16 20 H 0.07 1.36 8.12 -51.93 -0.42 0.93 16 21 N -0.71 -16.98 4.61 -51.65 -0.24 -17.21 16 22 C -0.24 -6.51 9.98 -15.06 -0.15 -6.66 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 26 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 33 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 35 H 0.18 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.17 2.44 5.12 -52.48 -0.27 2.17 16 40 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 41 H 0.08 1.87 7.61 -51.93 -0.39 1.48 16 42 H 0.39 9.77 6.10 -40.82 -0.25 9.52 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -32.35 353.79 -8.57 -40.92 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.38 Total: 9.31 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -4.11 Total: -0.59 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.54 Total: -62.29 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.35 -8.57 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054886729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.281 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds