Wall clock time and date at job start Tue Mar 31 2020 14:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21501 * 119.99982 * 0.02562 * 6 5 4 8 8 C 1.48279 * 120.00050 * 179.97438 * 6 5 4 9 9 C 1.40371 * 119.18638 * 179.72807 * 8 6 5 10 10 C 1.36555 * 119.82712 * 179.76010 * 9 8 6 11 11 C 1.40559 * 118.05899 * 0.50237 * 10 9 8 12 12 C 1.40516 * 122.21776 * 179.76723 * 11 10 9 13 13 C 1.36256 * 118.68482 * 179.97438 * 12 11 10 14 14 N 1.32584 * 121.80471 * 0.02576 * 13 12 11 15 15 C 1.31113 * 122.87507 * 359.95255 * 14 13 12 16 16 C 1.40861 * 119.95473 * 0.04252 * 15 14 13 17 17 N 1.31885 * 119.19193 * 0.02562 * 8 6 5 18 18 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 19 19 C 1.54325 * 107.30599 * 358.92448 * 18 5 4 20 20 H 1.09002 * 110.72180 * 219.45147 * 19 18 5 21 21 N 1.46499 * 110.71877 * 96.18142 * 19 18 5 22 22 C 1.36941 * 120.00165 * 91.47613 * 21 19 18 23 23 H 1.08007 * 119.99638 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00136 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00090 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00156 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46686 * 60.00577 * 26 24 22 28 28 H 1.48497 * 109.47256 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47120 * 300.00953 * 26 24 22 30 30 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 31 31 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 32 32 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 33 33 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 34 34 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 35 35 H 1.08001 * 120.08973 * 0.02907 * 9 8 6 36 36 H 1.07997 * 120.97361 * 180.24639 * 10 9 8 37 37 H 1.08004 * 120.65853 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.09715 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.02020 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.85762 * 239.50064 * 18 5 4 41 41 H 1.08995 * 110.00297 * 118.43011 * 18 5 4 42 42 H 0.96996 * 120.00138 * 271.47877 * 21 19 18 43 43 H 0.96999 * 120.00031 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2983 -1.4967 -2.8030 8 6 5.7509 -1.9851 -1.0344 9 6 6.7992 -2.3169 -1.9070 10 6 8.0068 -2.7052 -1.4013 11 6 8.1493 -2.7679 -0.0044 12 6 9.3508 -3.1608 0.6092 13 6 9.4094 -3.1955 1.9700 14 7 8.3675 -2.8704 2.7228 15 6 7.2162 -2.4946 2.2205 16 6 7.0476 -2.4240 0.8238 17 7 5.8952 -2.0477 0.2751 18 6 3.4675 -1.2741 0.6959 19 6 2.0862 -0.8079 1.2022 20 1 2.1922 -0.1699 2.0796 21 7 1.2269 -1.9574 1.4962 22 6 1.2059 -2.4919 2.7568 23 1 1.8226 -2.0658 3.5344 24 6 0.3913 -3.5808 3.0355 25 7 -0.3606 -4.0998 2.0880 26 14 0.3632 -4.3104 4.7549 27 1 -0.0772 -3.2755 5.7245 28 1 -0.5803 -5.4565 4.7909 29 1 1.7252 -4.7794 5.1159 30 1 -0.3634 -1.0267 0.0439 31 1 -0.3633 0.5514 0.8673 32 1 -0.3633 0.4753 -0.9111 33 1 1.4518 -1.6704 -1.4024 34 1 2.1541 -0.1725 -2.0842 35 1 6.6524 -2.2610 -2.9755 36 1 8.8271 -2.9608 -2.0556 37 1 10.2111 -3.4291 0.0139 38 1 10.3295 -3.4969 2.4486 39 1 6.3976 -2.2395 2.8772 40 1 4.2427 -0.5997 1.0599 41 1 3.6662 -2.2883 1.0423 42 1 0.6728 -2.3399 0.7980 43 1 -0.9295 -4.8609 2.2827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054910958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:30 Heat of formation + Delta-G solvation = 61.741131 kcal Electronic energy + Delta-G solvation = -27446.644766 eV Core-core repulsion = 23685.665998 eV Total energy + Delta-G solvation = -3760.978767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47548 -39.83086 -38.21987 -37.34467 -34.27148 -33.78605 -32.36638 -31.69126 -30.67833 -30.38758 -27.71395 -26.76224 -25.29010 -24.34146 -23.77082 -22.91286 -22.06710 -20.15876 -19.26307 -18.43752 -17.83904 -17.54022 -17.18984 -16.18759 -15.83432 -15.42475 -15.06443 -14.92468 -14.59567 -14.47024 -14.30401 -13.77570 -13.67875 -13.34658 -13.08835 -12.93658 -12.81468 -12.47138 -12.32144 -12.10926 -11.89839 -11.48622 -11.10688 -11.07820 -10.91437 -10.78030 -10.53479 -10.32044 -10.23242 -9.91488 -9.79138 -9.62170 -9.54676 -9.53438 -8.93524 -8.71122 -8.25512 -7.02203 -5.80563 -3.09958 -0.14962 0.33884 1.56668 2.34828 3.07788 3.25304 3.42804 3.47956 3.48331 3.79958 3.90935 4.13015 4.23220 4.38101 4.46550 4.54903 4.56198 4.87163 4.97860 5.06365 5.23194 5.28835 5.37334 5.40422 5.50693 5.58265 5.59874 5.71653 5.85345 5.85701 5.93022 6.04733 6.08322 6.24398 6.29426 6.32540 6.37405 6.47159 6.62309 6.66456 6.89148 6.98834 7.35682 7.67290 7.69992 7.78730 8.26832 8.37509 9.49230 10.04053 10.38799 11.41622 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004403 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.593316 B = 6357.858090 C = 8418.418869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.112 3.888 5 N -0.581 5.581 6 C 0.574 3.426 7 O -0.547 6.547 8 C 0.124 3.876 9 C -0.105 4.105 10 C -0.071 4.071 11 C -0.065 4.065 12 C -0.152 4.152 13 C 0.082 3.918 14 N -0.478 5.478 15 C 0.183 3.817 16 C 0.063 3.937 17 N -0.407 5.407 18 C 0.087 3.913 19 C 0.167 3.833 20 H 0.073 0.927 21 N -0.711 5.711 22 C -0.243 4.243 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.179 0.821 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.386 0.614 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.134 5.902 -5.950 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.010 4.010 5 N -0.311 5.311 6 C 0.360 3.640 7 O -0.426 6.426 8 C -0.031 4.031 9 C -0.127 4.127 10 C -0.097 4.097 11 C -0.072 4.072 12 C -0.173 4.173 13 C -0.060 4.060 14 N -0.187 5.187 15 C 0.009 3.991 16 C -0.062 4.062 17 N -0.120 5.120 18 C -0.038 4.038 19 C 0.054 3.946 20 H 0.091 0.909 21 N -0.352 5.352 22 C -0.374 4.374 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.196 0.804 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.222 0.778 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.675 5.952 -4.905 18.372 hybrid contribution 0.540 -0.962 -0.736 1.326 sum 17.214 4.990 -5.641 18.790 Atomic orbital electron populations 1.21559 0.93304 1.03572 1.00507 1.22658 0.97022 0.98449 0.95471 0.90387 1.22358 0.82368 0.98641 0.97587 1.48382 1.11317 1.62546 1.08853 1.17459 0.82417 0.78672 0.85423 1.90757 1.82651 1.55424 1.13763 1.21478 0.95018 0.97363 0.89203 1.21883 0.92126 0.96269 1.02380 1.21375 0.97901 0.97076 0.93379 1.19095 0.95081 0.98197 0.94820 1.21872 0.97325 1.01655 0.96427 1.22339 0.97168 0.95771 0.90770 1.67550 0.99817 1.10613 1.40727 1.23363 0.94798 0.90509 0.90409 1.20018 0.89703 1.00454 0.96064 1.68203 1.22114 1.09516 1.12160 1.23451 1.00113 1.03216 0.77023 1.21328 0.88704 0.89853 0.94702 0.90882 1.42433 1.48912 1.33031 1.10803 1.19194 1.20534 1.09949 0.87735 0.91005 1.24721 0.99387 0.98815 0.97558 1.69644 1.30158 1.26246 1.31829 0.86299 0.77283 0.78564 0.84212 1.21201 1.21794 1.21231 0.90780 0.92297 0.93770 0.90847 0.91044 0.82826 0.83338 0.84102 0.82492 0.80403 0.91853 0.89650 0.77849 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.98 37.16 0.33 -1.72 16 2 C -0.12 -1.80 3.51 -88.47 -0.31 -2.11 16 3 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 4 C 0.11 1.85 6.33 -2.53 -0.02 1.83 16 5 N -0.58 -10.07 3.34 -171.25 -0.57 -10.64 16 6 C 0.57 9.99 7.84 -12.13 -0.10 9.89 16 7 O -0.55 -10.39 16.53 5.36 0.09 -10.30 16 8 C 0.12 1.88 6.73 -82.91 -0.56 1.33 16 9 C -0.10 -1.26 9.54 -39.39 -0.38 -1.64 16 10 C -0.07 -0.70 9.93 -39.31 -0.39 -1.09 16 11 C -0.06 -0.73 5.75 -106.70 -0.61 -1.35 16 12 C -0.15 -1.35 9.88 -39.44 -0.39 -1.74 16 13 C 0.08 0.79 11.07 -17.94 -0.20 0.59 16 14 N -0.48 -5.90 10.28 -13.05 -0.13 -6.04 16 15 C 0.18 2.35 11.26 -16.87 -0.19 2.16 16 16 C 0.06 0.86 6.62 -84.88 -0.56 0.29 16 17 N -0.41 -6.18 6.80 -7.51 -0.05 -6.23 16 18 C 0.09 1.53 5.14 -2.92 -0.02 1.51 16 19 C 0.17 3.06 3.39 -66.10 -0.22 2.83 16 20 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 21 N -0.71 -16.43 4.46 -51.65 -0.23 -16.66 16 22 C -0.24 -6.32 9.96 -15.06 -0.15 -6.47 16 23 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 26 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.07 1.37 6.27 -51.93 -0.33 1.04 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 34 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 36 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.18 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.06 1.02 7.41 -51.93 -0.38 0.63 16 41 H 0.09 1.73 7.44 -51.93 -0.39 1.34 16 42 H 0.39 9.61 6.25 -40.82 -0.25 9.36 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -31.59 358.71 -9.15 -40.75 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.51 Total: 9.42 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -3.85 Total: 3.98 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.26 Total: -66.00 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.59 -9.15 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054910958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.488 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds