Wall clock time and date at job start Tue Mar 31 2020 14:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21501 * 119.99982 * 0.02562 * 6 5 4 8 8 C 1.48279 * 120.00050 * 179.97438 * 6 5 4 9 9 C 1.40371 * 119.18638 * 179.72807 * 8 6 5 10 10 C 1.36555 * 119.82712 * 179.76010 * 9 8 6 11 11 C 1.40559 * 118.05899 * 0.50237 * 10 9 8 12 12 C 1.40516 * 122.21776 * 179.76723 * 11 10 9 13 13 C 1.36256 * 118.68482 * 179.97438 * 12 11 10 14 14 N 1.32584 * 121.80471 * 0.02576 * 13 12 11 15 15 C 1.31113 * 122.87507 * 359.95255 * 14 13 12 16 16 C 1.40861 * 119.95473 * 0.04252 * 15 14 13 17 17 N 1.31885 * 119.19193 * 0.02562 * 8 6 5 18 18 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 19 19 C 1.54325 * 107.30599 * 358.92448 * 18 5 4 20 20 H 1.09002 * 110.72180 * 219.45147 * 19 18 5 21 21 N 1.46499 * 110.71877 * 96.18142 * 19 18 5 22 22 C 1.36941 * 120.00165 * 91.47613 * 21 19 18 23 23 H 1.08007 * 119.99638 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00136 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00090 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00156 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46686 * 60.00577 * 26 24 22 28 28 H 1.48497 * 109.47256 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47120 * 300.00953 * 26 24 22 30 30 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 31 31 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 32 32 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 33 33 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 34 34 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 35 35 H 1.08001 * 120.08973 * 0.02907 * 9 8 6 36 36 H 1.07997 * 120.97361 * 180.24639 * 10 9 8 37 37 H 1.08004 * 120.65853 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.09715 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.02020 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.85762 * 239.50064 * 18 5 4 41 41 H 1.08995 * 110.00297 * 118.43011 * 18 5 4 42 42 H 0.96996 * 120.00138 * 271.47877 * 21 19 18 43 43 H 0.96999 * 120.00031 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2983 -1.4967 -2.8030 8 6 5.7509 -1.9851 -1.0344 9 6 6.7992 -2.3169 -1.9070 10 6 8.0068 -2.7052 -1.4013 11 6 8.1493 -2.7679 -0.0044 12 6 9.3508 -3.1608 0.6092 13 6 9.4094 -3.1955 1.9700 14 7 8.3675 -2.8704 2.7228 15 6 7.2162 -2.4946 2.2205 16 6 7.0476 -2.4240 0.8238 17 7 5.8952 -2.0477 0.2751 18 6 3.4675 -1.2741 0.6959 19 6 2.0862 -0.8079 1.2022 20 1 2.1922 -0.1699 2.0796 21 7 1.2269 -1.9574 1.4962 22 6 1.2059 -2.4919 2.7568 23 1 1.8226 -2.0658 3.5344 24 6 0.3913 -3.5808 3.0355 25 7 -0.3606 -4.0998 2.0880 26 14 0.3632 -4.3104 4.7549 27 1 -0.0772 -3.2755 5.7245 28 1 -0.5803 -5.4565 4.7909 29 1 1.7252 -4.7794 5.1159 30 1 -0.3634 -1.0267 0.0439 31 1 -0.3633 0.5514 0.8673 32 1 -0.3633 0.4753 -0.9111 33 1 1.4518 -1.6704 -1.4024 34 1 2.1541 -0.1725 -2.0842 35 1 6.6524 -2.2610 -2.9755 36 1 8.8271 -2.9608 -2.0556 37 1 10.2111 -3.4291 0.0139 38 1 10.3295 -3.4969 2.4486 39 1 6.3976 -2.2395 2.8772 40 1 4.2427 -0.5997 1.0599 41 1 3.6662 -2.2883 1.0423 42 1 0.6728 -2.3399 0.7980 43 1 -0.9295 -4.8609 2.2827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054910958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:30 Heat of formation + Delta-G solvation = 41.642780 kcal Electronic energy + Delta-G solvation = -27447.516295 eV Core-core repulsion = 23685.665998 eV Total energy + Delta-G solvation = -3761.850297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.41565 -41.10412 -39.38634 -38.58404 -35.76618 -34.98431 -33.84842 -32.65660 -32.20349 -31.47824 -29.33854 -27.99141 -26.34346 -25.72276 -25.24695 -23.88272 -23.36492 -21.34325 -20.70508 -19.49086 -19.34902 -18.74403 -18.37017 -17.31760 -17.24505 -16.69333 -16.37669 -16.04994 -15.92524 -15.62434 -15.39238 -15.24849 -14.82989 -14.52661 -14.49382 -14.14947 -14.10345 -13.67144 -13.49079 -13.30560 -13.10245 -13.02573 -12.84521 -12.74288 -12.32442 -12.17613 -12.02674 -11.94166 -11.63570 -11.43680 -11.32832 -11.04690 -10.76249 -10.49049 -10.45634 -9.69231 -9.51908 -8.97075 -7.89999 -5.17420 -1.06117 -0.56036 0.69194 1.30503 1.50075 1.51832 1.57232 1.82522 2.16119 2.59227 2.74679 2.97038 3.30542 3.36763 3.42317 3.44162 3.61777 3.65911 3.75407 3.93097 3.95877 4.06038 4.11275 4.26264 4.44583 4.50161 4.60808 4.62087 4.69357 4.71298 4.75732 4.79130 4.91756 5.02446 5.04447 5.06245 5.23558 5.26139 5.28925 5.38231 5.51977 5.57363 5.63274 6.31286 6.34294 6.43526 6.83981 6.94793 7.39008 8.13016 8.36467 9.33186 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004403 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.593316 B = 6357.858090 C = 8418.418869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.588 5.588 6 C 0.569 3.431 7 O -0.569 6.569 8 C 0.101 3.899 9 C -0.119 4.119 10 C -0.044 4.044 11 C -0.077 4.077 12 C -0.130 4.130 13 C 0.071 3.929 14 N -0.492 5.492 15 C 0.161 3.839 16 C 0.042 3.958 17 N -0.433 5.433 18 C 0.108 3.892 19 C 0.157 3.843 20 H 0.082 0.918 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.969 5.969 26 Si 0.965 3.035 27 H -0.276 1.276 28 H -0.302 1.302 29 H -0.282 1.282 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.198 0.802 37 H 0.188 0.812 38 H 0.192 0.808 39 H 0.172 0.828 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.375 0.625 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.481 6.633 -6.253 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 H 0.127 0.873 4 C -0.010 4.010 5 N -0.318 5.318 6 C 0.357 3.643 7 O -0.449 6.449 8 C -0.053 4.053 9 C -0.141 4.141 10 C -0.070 4.070 11 C -0.084 4.084 12 C -0.150 4.150 13 C -0.071 4.071 14 N -0.201 5.201 15 C -0.012 4.012 16 C -0.084 4.084 17 N -0.146 5.146 18 C -0.017 4.017 19 C 0.047 3.953 20 H 0.100 0.900 21 N -0.360 5.360 22 C -0.365 4.365 23 H 0.098 0.902 24 C -0.264 4.264 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.202 1.202 28 H -0.228 1.228 29 H -0.209 1.209 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.181 0.819 36 H 0.215 0.785 37 H 0.205 0.795 38 H 0.209 0.791 39 H 0.189 0.811 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.208 0.792 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.053 6.732 -5.193 21.781 hybrid contribution -0.305 -1.170 -0.653 1.374 sum 19.747 5.562 -5.846 21.332 Atomic orbital electron populations 1.21477 0.93225 1.01641 1.01932 1.22613 0.96939 0.99230 0.93201 0.87306 1.22363 0.81893 0.98156 0.98584 1.48473 1.11721 1.62891 1.08677 1.17925 0.83230 0.77921 0.85235 1.90721 1.83325 1.56317 1.14528 1.21342 0.94786 0.99236 0.89905 1.21998 0.92343 0.97293 1.02418 1.21869 0.97979 0.93960 0.93146 1.19447 0.95323 0.98104 0.95523 1.22333 0.97397 0.98895 0.96396 1.22979 0.97426 0.95201 0.91542 1.67546 1.00216 1.10532 1.41852 1.23289 0.95333 0.92167 0.90429 1.20194 0.90204 1.01352 0.96605 1.68026 1.23527 1.10631 1.12392 1.23061 0.99668 1.01642 0.77346 1.21579 0.88517 0.88855 0.96388 0.89986 1.42560 1.49526 1.34237 1.09639 1.19602 1.18894 1.09075 0.88886 0.90156 1.25428 1.00168 1.00014 1.00743 1.69806 1.31700 1.26934 1.33596 0.85338 0.76920 0.77577 0.80691 1.20163 1.22823 1.20876 0.94187 0.92241 0.91042 0.93052 0.89608 0.81931 0.78517 0.79527 0.79124 0.81139 0.90298 0.92779 0.79176 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 8.98 71.98 0.65 -3.21 16 2 C -0.10 -3.04 3.51 -9.40 -0.03 -3.07 16 3 H 0.11 2.71 8.14 -2.38 -0.02 2.70 16 4 C 0.11 3.71 6.33 86.85 0.55 4.26 16 5 N -0.59 -20.78 3.34 -814.02 -2.71 -23.49 16 6 C 0.57 20.17 7.84 86.92 0.68 20.86 16 7 O -0.57 -21.86 16.53 -3.72 -0.06 -21.92 16 8 C 0.10 3.09 6.73 42.33 0.28 3.38 16 9 C -0.12 -2.69 9.54 22.40 0.21 -2.48 16 10 C -0.04 -0.71 9.93 22.44 0.22 -0.48 16 11 C -0.08 -1.52 5.75 -21.21 -0.12 -1.65 16 12 C -0.13 -1.73 9.88 22.36 0.22 -1.51 16 13 C 0.07 1.13 11.07 84.12 0.93 2.06 16 14 N -0.49 -11.58 10.28 -195.21 -2.01 -13.59 16 15 C 0.16 4.19 11.26 85.44 0.96 5.15 16 16 C 0.04 1.12 6.62 40.54 0.27 1.39 16 17 N -0.43 -13.38 6.80 -177.69 -1.21 -14.59 16 18 C 0.11 3.87 5.14 86.68 0.45 4.31 16 19 C 0.16 5.80 3.39 46.18 0.16 5.95 16 20 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 21 N -0.72 -34.24 4.46 -317.32 -1.42 -35.66 16 22 C -0.23 -12.32 9.96 84.03 0.84 -11.49 16 23 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 25 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 26 Si 0.96 45.71 29.55 68.60 2.03 47.74 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 29 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 30 H 0.04 1.52 6.27 -2.39 -0.01 1.50 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 34 H 0.09 2.59 8.03 -2.39 -0.02 2.57 16 35 H 0.16 3.29 7.60 -2.91 -0.02 3.27 16 36 H 0.20 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 40 H 0.08 2.57 7.41 -2.38 -0.02 2.55 16 41 H 0.05 2.29 7.44 -2.39 -0.02 2.28 16 42 H 0.37 19.54 6.25 -92.71 -0.58 18.96 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -72.02 358.71 2.10 -69.92 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.47 Total: 30.04 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 6.73 Total: 19.93 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -7.06 Total: -145.71 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.02 2.10 -69.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054910958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.564 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds