Wall clock time and date at job start Tue Mar 31 2020 14:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.46911 * 2 1 4 4 O 1.21280 * 120.00135 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99798 * 179.97438 * 3 2 1 6 6 C 1.47851 * 122.23108 * 0.02639 * 5 3 2 7 7 C 1.52707 * 111.05992 * 232.45998 * 6 5 3 8 8 C 1.53865 * 111.52797 * 311.46728 * 7 6 5 9 9 C 1.51094 * 107.34209 * 56.92989 * 8 7 6 10 10 H 1.09003 * 108.73776 * 51.46930 * 9 8 7 11 11 C 1.45722 * 122.22429 * 180.02562 * 5 3 2 12 12 H 1.09004 * 111.63423 * 240.85812 * 11 5 3 13 13 C 1.53422 * 116.38377 * 9.90391 * 11 5 3 14 14 C 1.55477 * 101.67062 * 152.73860 * 13 11 5 15 15 N 1.45019 * 119.18751 * 176.12514 * 9 8 7 16 16 C 1.34783 * 126.55949 * 331.21771 * 15 9 8 17 17 O 1.21277 * 119.99915 * 0.02562 * 16 15 9 18 18 C 1.50697 * 120.00032 * 180.02562 * 16 15 9 19 19 S 1.80997 * 109.47193 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99965 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99869 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99684 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00272 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99654 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47346 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47259 * 120.00471 * 24 22 20 27 27 H 1.48504 * 109.47320 * 240.00598 * 24 22 20 28 28 H 1.08999 * 109.47301 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.47741 * 59.99449 * 1 2 3 30 30 H 1.09002 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47301 * 240.00329 * 2 1 3 32 32 H 1.09003 * 109.47360 * 120.00352 * 2 1 3 33 33 H 1.09004 * 109.15669 * 112.04874 * 6 5 3 34 34 H 1.09002 * 109.11856 * 352.84098 * 6 5 3 35 35 H 1.09002 * 109.07092 * 190.94211 * 7 6 5 36 36 H 1.09003 * 109.07011 * 71.99478 * 7 6 5 37 37 H 1.08994 * 109.88866 * 297.46892 * 8 7 6 38 38 H 1.09001 * 109.88572 * 176.38384 * 8 7 6 39 39 H 1.09005 * 110.98721 * 34.64775 * 13 11 5 40 40 H 1.08999 * 111.02210 * 270.84923 * 13 11 5 41 41 H 1.08999 * 109.95892 * 96.77474 * 14 13 11 42 42 H 1.09000 * 109.96140 * 218.01579 * 14 13 11 43 43 H 1.09004 * 109.46923 * 299.99793 * 18 16 15 44 44 H 1.09004 * 109.47346 * 59.99513 * 18 16 15 45 45 H 0.96994 * 119.99949 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3612 0.5816 0.0005 7 6 5.3709 0.7679 1.1309 8 6 5.9206 2.2046 1.1659 9 6 4.7386 3.1358 1.3024 10 1 4.1265 2.8041 2.1411 11 6 3.8961 3.0211 0.0011 12 1 4.5034 3.2124 -0.8836 13 6 2.8900 4.1551 0.2375 14 6 3.7938 5.2506 0.8702 15 7 4.9730 4.5598 1.4460 16 6 6.0553 5.1436 1.9978 17 8 6.9564 4.4598 2.4351 18 6 6.1456 6.6461 2.0714 19 16 7.7045 7.1189 2.8601 20 6 7.5502 8.8736 2.8153 21 1 6.6703 9.3274 2.3839 22 6 8.5592 9.6724 3.3355 23 7 9.6314 9.1193 3.8617 24 14 8.3953 11.5326 3.2886 25 1 7.1056 11.9001 2.6507 26 1 8.4323 12.0679 4.6733 27 1 9.5174 12.1089 2.5050 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.8881 0.5817 -0.9537 34 1 3.8532 -0.3743 0.1284 35 1 6.1986 0.0734 0.9872 36 1 4.8852 0.5492 2.0819 37 1 6.4566 2.4191 0.2414 38 1 6.5881 2.3255 2.0190 39 1 2.1084 3.8452 0.9313 40 1 2.4602 4.4989 -0.7033 41 1 4.1143 5.9566 0.1041 42 1 3.2489 5.7748 1.6552 43 1 6.1065 7.0622 1.0647 44 1 5.3109 7.0320 2.6567 45 1 10.3365 9.6775 4.2248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056162999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:31 Heat of formation + Delta-G solvation = -62.335238 kcal Electronic energy + Delta-G solvation = -26073.151150 eV Core-core repulsion = 22409.943228 eV Total energy + Delta-G solvation = -3663.207922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27106 -39.41332 -37.67470 -36.03002 -33.25119 -33.14719 -32.42464 -31.19996 -29.48839 -28.51180 -25.95654 -25.49046 -24.22751 -23.32982 -21.75632 -21.62857 -19.36638 -18.92776 -17.65437 -16.87397 -16.73836 -16.26883 -16.20156 -15.57952 -15.18897 -14.80019 -14.69326 -14.40453 -14.32661 -13.95079 -13.69722 -13.61099 -13.15731 -13.06140 -12.69685 -12.59941 -12.55784 -12.24991 -12.08012 -11.82973 -11.71499 -11.52554 -11.44427 -11.10331 -11.09084 -11.06105 -11.00537 -10.88709 -10.75151 -9.80653 -9.68399 -9.38575 -9.06889 -8.85223 -8.46085 -8.22773 -6.49624 -6.21474 -3.91742 2.31290 2.49004 2.97666 3.06205 3.22021 3.26959 3.31895 3.60266 3.98873 4.20779 4.28377 4.47929 4.57652 4.61633 4.67129 4.71434 4.76410 4.89347 5.01102 5.08638 5.09549 5.13318 5.14314 5.21787 5.32783 5.41902 5.47705 5.54680 5.56784 5.62234 5.67362 5.71034 5.84493 5.87180 5.92248 5.97793 6.09346 6.15051 6.20566 6.26535 6.59070 7.09144 7.60588 7.69610 7.88164 8.36144 8.57250 9.24131 10.86044 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028800 B = 0.002590 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.974046 B =10808.396904 C =11586.960145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.518 3.482 4 O -0.533 6.533 5 N -0.605 5.605 6 C 0.107 3.893 7 C -0.132 4.132 8 C -0.121 4.121 9 C 0.127 3.873 10 H 0.063 0.937 11 C 0.123 3.877 12 H 0.090 0.910 13 C -0.117 4.117 14 C 0.098 3.902 15 N -0.619 5.619 16 C 0.552 3.448 17 O -0.513 6.513 18 C -0.147 4.147 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.859 -20.278 -10.215 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.307 3.693 4 O -0.410 6.410 5 N -0.339 5.339 6 C -0.015 4.015 7 C -0.170 4.170 8 C -0.159 4.159 9 C 0.021 3.979 10 H 0.081 0.919 11 C 0.018 3.982 12 H 0.108 0.892 13 C -0.155 4.155 14 C -0.025 4.025 15 N -0.356 5.356 16 C 0.341 3.659 17 O -0.387 6.387 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.722 -20.732 -9.426 27.119 hybrid contribution -0.992 1.994 -0.557 2.296 sum -15.714 -18.738 -9.983 26.414 Atomic orbital electron populations 1.21534 0.92909 1.01586 1.03433 1.21677 0.98660 0.93895 1.04155 1.20745 0.81073 0.91971 0.75510 1.90684 1.54780 1.46052 1.49482 1.47968 1.05560 1.06698 1.73646 1.21828 0.90182 0.89782 0.99713 1.21939 0.98651 0.97711 0.98734 1.21539 0.97435 0.92343 1.04609 1.21423 0.96982 0.82668 0.96804 0.91866 1.22129 0.95651 0.82451 0.97975 0.89177 1.22797 0.96888 0.92886 1.02932 1.22612 0.86073 0.95719 0.98081 1.48111 1.19737 1.06061 1.61691 1.20013 0.79703 0.90005 0.76172 1.90666 1.37085 1.64864 1.46064 1.23509 1.07558 0.93205 1.05472 1.85355 1.16040 1.05665 1.76379 1.22902 1.08164 0.91034 1.46067 0.90884 1.24995 0.94490 0.99598 0.94542 1.70025 1.07441 1.35780 1.37070 0.86115 0.78270 0.83115 0.77986 1.19604 1.20566 1.20564 0.91921 0.91952 0.92113 0.88994 0.88946 0.91029 0.89556 0.89803 0.91394 0.91322 0.88582 0.88020 0.89676 0.90842 0.90807 0.89307 0.89317 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.15 0.34 -0.53 16 2 C -0.14 -0.84 4.84 -27.88 -0.13 -0.98 16 3 C 0.52 4.91 7.69 -10.98 -0.08 4.83 16 4 O -0.53 -6.74 12.81 5.56 0.07 -6.67 16 5 N -0.60 -5.38 2.91 -164.03 -0.48 -5.86 16 6 C 0.11 0.66 6.32 -3.45 -0.02 0.64 16 7 C -0.13 -1.01 5.93 -26.43 -0.16 -1.17 16 8 C -0.12 -1.44 5.11 -27.24 -0.14 -1.58 16 9 C 0.13 1.62 2.51 -68.38 -0.17 1.45 16 10 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 11 C 0.12 1.31 3.32 -66.83 -0.22 1.09 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.12 -1.30 5.01 -25.20 -0.13 -1.42 16 14 C 0.10 1.19 6.63 -1.73 -0.01 1.18 16 15 N -0.62 -9.35 3.28 -163.81 -0.54 -9.88 16 16 C 0.55 10.73 7.82 -10.98 -0.09 10.65 16 17 O -0.51 -11.53 14.08 5.56 0.08 -11.45 16 18 C -0.15 -3.07 5.42 36.00 0.20 -2.87 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.37 8.02 -51.93 -0.42 -0.04 16 32 H 0.09 0.41 7.76 -51.93 -0.40 0.01 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.32 6.17 -51.93 -0.32 0.00 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.10 1.44 6.55 -51.93 -0.34 1.10 16 39 H 0.10 1.27 6.21 -51.93 -0.32 0.95 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 44 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -35.12 367.17 -9.51 -44.62 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.26 Total: -1.69 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.42 Total: -1.73 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.28 Total: -41.27 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.15 Total: -18.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.12 -9.51 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056162999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.711 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds