Wall clock time and date at job start Tue Mar 31 2020 14:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46796 * 2 1 4 4 O 1.21283 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00072 * 180.02562 * 3 2 1 6 6 C 1.47846 * 122.22644 * 0.02562 * 5 3 2 7 7 C 1.52713 * 111.06516 * 127.49787 * 6 5 3 8 8 C 1.53870 * 111.52444 * 48.52455 * 7 6 5 9 9 C 1.51087 * 107.34199 * 303.08012 * 8 7 6 10 10 H 1.09001 * 108.30646 * 308.75677 * 9 8 7 11 11 C 1.45723 * 122.22939 * 179.97438 * 5 3 2 12 12 H 1.08992 * 111.64153 * 119.17980 * 11 5 3 13 13 C 1.53433 * 116.37980 * 350.12759 * 11 5 3 14 14 C 1.55413 * 101.58253 * 207.07284 * 13 11 5 15 15 N 1.45022 * 119.18614 * 183.88663 * 9 8 7 16 16 C 1.34775 * 126.56271 * 28.76164 * 15 9 8 17 17 O 1.21284 * 120.00295 * 0.02562 * 16 15 9 18 18 C 1.50708 * 119.99957 * 179.97438 * 16 15 9 19 19 S 1.80998 * 109.47052 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00013 * 180.02562 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47049 * 269.99633 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99707 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00426 * 24 22 20 28 28 H 1.09005 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47079 * 299.99742 * 1 2 3 30 30 H 1.08998 * 109.47017 * 60.00780 * 1 2 3 31 31 H 1.09000 * 109.47389 * 239.99542 * 2 1 3 32 32 H 1.08998 * 109.47017 * 119.99220 * 2 1 3 33 33 H 1.09003 * 109.16133 * 247.90479 * 6 5 3 34 34 H 1.08997 * 109.16287 * 7.14239 * 6 5 3 35 35 H 1.09001 * 109.07381 * 169.05498 * 7 6 5 36 36 H 1.09001 * 109.06842 * 288.00351 * 7 6 5 37 37 H 1.08995 * 109.88294 * 183.61710 * 8 7 6 38 38 H 1.09001 * 109.87970 * 62.53770 * 8 7 6 39 39 H 1.09003 * 110.98433 * 325.37301 * 13 11 5 40 40 H 1.09003 * 110.98464 * 89.13742 * 13 11 5 41 41 H 1.08997 * 110.05042 * 263.49698 * 14 13 11 42 42 H 1.09002 * 109.84174 * 142.27684 * 14 13 11 43 43 H 1.09005 * 109.46512 * 60.00633 * 18 16 15 44 44 H 1.08991 * 109.47135 * 300.00153 * 18 16 15 45 45 H 0.97001 * 119.99662 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3611 0.5817 -0.0017 7 6 5.3701 0.7683 -1.1327 8 6 5.9197 2.2051 -1.1676 9 6 4.7377 3.1362 -1.3029 10 1 4.1280 2.7962 -2.1400 11 6 3.8961 3.0212 -0.0011 12 1 4.5039 3.2123 0.8832 13 6 2.8898 4.1552 -0.2368 14 6 3.7957 5.2508 -0.8647 15 7 4.9719 4.5602 -1.4464 16 6 6.0537 5.1443 -1.9987 17 8 6.9544 4.4606 -2.4374 18 6 6.1438 6.6468 -2.0721 19 16 7.7023 7.1199 -2.8616 20 6 7.5478 8.8746 -2.8164 21 1 6.6685 9.3282 -2.3837 22 6 8.5563 9.6736 -3.3370 23 7 9.6279 9.1206 -3.8649 24 14 8.3929 11.5338 -3.2884 25 1 7.7217 12.0042 -4.5269 26 1 7.5851 11.9291 -2.1068 27 1 9.7421 12.1469 -3.1934 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 4.8889 0.5814 0.9521 34 1 3.8539 -0.3745 -0.1300 35 1 6.1979 0.0737 -0.9897 36 1 4.8838 0.5499 -2.0834 37 1 6.5867 2.3262 -2.0211 38 1 6.4564 2.4192 -0.2433 39 1 2.1077 3.8453 -0.9299 40 1 2.4607 4.4982 0.7047 41 1 4.1197 5.9531 -0.0967 42 1 3.2496 5.7792 -1.6461 43 1 6.1053 7.0627 -1.0652 44 1 5.3089 7.0327 -2.6568 45 1 9.7129 8.1546 -3.8897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056163003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:34 Heat of formation + Delta-G solvation = -67.581291 kcal Electronic energy + Delta-G solvation = -26109.650726 eV Core-core repulsion = 22446.215318 eV Total energy + Delta-G solvation = -3663.435408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32775 -39.48389 -37.75133 -36.09523 -33.28818 -33.19739 -32.52753 -31.28700 -29.55848 -28.62629 -25.99650 -24.88748 -24.24739 -23.38228 -21.81020 -21.67627 -19.41768 -19.01732 -18.15814 -16.98872 -16.79848 -16.36009 -16.28961 -15.72979 -15.27325 -14.75038 -14.55611 -14.47552 -14.20699 -13.84613 -13.77149 -13.67415 -13.21771 -13.13437 -12.73853 -12.65352 -12.39002 -12.33872 -12.12257 -11.93961 -11.89784 -11.72213 -11.55389 -11.48525 -11.14694 -11.13392 -10.94115 -10.90703 -10.18911 -9.73558 -9.57855 -9.48742 -9.01122 -8.90904 -8.54255 -8.22475 -6.67354 -6.62352 -4.00080 2.27605 2.43735 2.86696 2.95087 3.33079 3.39199 3.44554 3.56619 3.93752 4.21943 4.25992 4.43284 4.52475 4.57078 4.64074 4.68364 4.71496 4.84625 4.92477 5.03097 5.06075 5.07060 5.16066 5.22418 5.28346 5.39010 5.41855 5.42763 5.53512 5.54463 5.61160 5.65381 5.76016 5.81975 5.86955 5.92275 6.01791 6.04222 6.12632 6.21298 6.51790 7.05190 7.59973 7.84485 7.92983 8.46005 8.50213 9.27004 10.81674 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028735 B = 0.002599 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.188889 B =10772.550918 C =11552.831510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.518 3.482 4 O -0.533 6.533 5 N -0.605 5.605 6 C 0.107 3.893 7 C -0.132 4.132 8 C -0.122 4.122 9 C 0.127 3.873 10 H 0.064 0.936 11 C 0.123 3.877 12 H 0.091 0.909 13 C -0.117 4.117 14 C 0.098 3.902 15 N -0.617 5.617 16 C 0.551 3.449 17 O -0.513 6.513 18 C -0.124 4.124 19 S -0.117 6.117 20 C -0.606 4.606 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.885 5.885 24 Si 1.087 2.913 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.280 1.280 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 -20.551 10.578 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.307 3.693 4 O -0.410 6.410 5 N -0.339 5.339 6 C -0.015 4.015 7 C -0.170 4.170 8 C -0.160 4.160 9 C 0.021 3.979 10 H 0.082 0.918 11 C 0.018 3.982 12 H 0.108 0.892 13 C -0.155 4.155 14 C -0.026 4.026 15 N -0.354 5.354 16 C 0.340 3.660 17 O -0.387 6.387 18 C -0.275 4.275 19 S 0.110 5.890 20 C -0.754 4.754 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.913 3.087 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.205 1.205 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.783 -19.643 9.464 26.343 hybrid contribution -1.827 -0.494 1.008 2.144 sum -16.609 -20.137 10.472 28.126 Atomic orbital electron populations 1.21537 0.92878 1.01613 1.03439 1.21677 0.98687 0.93851 1.04167 1.20754 0.81049 0.91997 0.75482 1.90686 1.54772 1.46053 1.49454 1.47966 1.05580 1.06656 1.73688 1.21826 0.90180 0.89812 0.99697 1.21942 0.98689 0.97638 0.98766 1.21548 0.97435 0.92422 1.04568 1.21421 0.97071 0.82512 0.96921 0.91783 1.22123 0.95646 0.82509 0.97893 0.89162 1.22795 0.96856 0.92807 1.03018 1.22616 0.86098 0.95777 0.98074 1.48056 1.19808 1.06153 1.61396 1.19984 0.79808 0.89931 0.76315 1.90668 1.37126 1.64840 1.46113 1.23291 1.05744 0.93262 1.05243 1.84776 1.19236 1.07486 1.77524 1.23722 1.11181 0.90135 1.50381 0.91581 1.26059 0.91685 1.07159 0.92645 1.70772 1.27276 1.14155 1.39697 0.83290 0.76275 0.72672 0.76456 1.21042 1.21286 1.20505 0.92088 0.91944 0.91911 0.88939 0.88973 0.91007 0.89504 0.89772 0.91378 0.88651 0.91343 0.87929 0.89613 0.90795 0.90762 0.89044 0.89049 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.14 -0.83 4.84 -27.88 -0.13 -0.96 16 3 C 0.52 4.85 7.69 -10.98 -0.08 4.76 16 4 O -0.53 -6.67 12.81 5.56 0.07 -6.60 16 5 N -0.61 -5.30 2.91 -164.04 -0.48 -5.78 16 6 C 0.11 0.65 6.32 -3.45 -0.02 0.63 16 7 C -0.13 -0.99 5.92 -26.43 -0.16 -1.15 16 8 C -0.12 -1.43 5.11 -27.24 -0.14 -1.57 16 9 C 0.13 1.60 2.52 -68.39 -0.17 1.43 16 10 H 0.06 0.86 8.03 -51.93 -0.42 0.45 16 11 C 0.12 1.30 3.32 -66.83 -0.22 1.08 16 12 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.12 -1.28 5.01 -25.23 -0.13 -1.40 16 14 C 0.10 1.17 6.63 -1.78 -0.01 1.16 16 15 N -0.62 -9.24 3.28 -163.88 -0.54 -9.78 16 16 C 0.55 10.65 7.82 -10.98 -0.09 10.57 16 17 O -0.51 -11.46 14.08 5.55 0.08 -11.38 16 18 C -0.12 -2.60 5.42 36.01 0.20 -2.41 16 19 S -0.12 -3.17 19.60 -107.50 -2.11 -5.28 16 20 C -0.61 -17.63 9.50 30.94 0.29 -17.34 16 21 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 22 C 0.03 1.02 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.68 13.67 55.49 0.76 -26.92 16 24 Si 1.09 25.20 29.92 -169.99 -5.09 20.11 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.09 0.40 7.75 -51.93 -0.40 0.00 16 32 H 0.09 0.36 8.02 -51.93 -0.42 -0.05 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.31 6.18 -51.93 -0.32 -0.01 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 1.42 6.55 -51.93 -0.34 1.08 16 38 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 39 H 0.10 1.27 6.21 -51.93 -0.32 0.94 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 44 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 45 H 0.28 8.87 7.12 -40.82 -0.29 8.58 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -35.78 365.78 -9.41 -45.19 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.21 Total: -0.28 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.42 Total: -4.80 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.26 Total: -42.48 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.15 Total: -17.98 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.11 Total: -5.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.78 -9.41 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056163003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.387 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds