Wall clock time and date at job start Tue Mar 31 2020 14:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46796 * 2 1 4 4 O 1.21283 * 120.00300 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00072 * 180.02562 * 3 2 1 6 6 C 1.47846 * 122.22644 * 0.02562 * 5 3 2 7 7 C 1.52713 * 111.06516 * 127.49787 * 6 5 3 8 8 C 1.53870 * 111.52444 * 48.52455 * 7 6 5 9 9 C 1.51087 * 107.34199 * 303.08012 * 8 7 6 10 10 H 1.09001 * 108.30646 * 308.75677 * 9 8 7 11 11 C 1.45723 * 122.22939 * 179.97438 * 5 3 2 12 12 H 1.08992 * 111.64153 * 119.17980 * 11 5 3 13 13 C 1.53433 * 116.37980 * 350.12759 * 11 5 3 14 14 C 1.55413 * 101.58253 * 207.07284 * 13 11 5 15 15 N 1.45022 * 119.18614 * 183.88663 * 9 8 7 16 16 C 1.34775 * 126.56271 * 28.76164 * 15 9 8 17 17 O 1.21284 * 120.00295 * 0.02562 * 16 15 9 18 18 C 1.50708 * 119.99957 * 179.97438 * 16 15 9 19 19 S 1.80998 * 109.47052 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00013 * 180.02562 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48511 * 109.47049 * 269.99633 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99707 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00426 * 24 22 20 28 28 H 1.09005 * 109.46632 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47079 * 299.99742 * 1 2 3 30 30 H 1.08998 * 109.47017 * 60.00780 * 1 2 3 31 31 H 1.09000 * 109.47389 * 239.99542 * 2 1 3 32 32 H 1.08998 * 109.47017 * 119.99220 * 2 1 3 33 33 H 1.09003 * 109.16133 * 247.90479 * 6 5 3 34 34 H 1.08997 * 109.16287 * 7.14239 * 6 5 3 35 35 H 1.09001 * 109.07381 * 169.05498 * 7 6 5 36 36 H 1.09001 * 109.06842 * 288.00351 * 7 6 5 37 37 H 1.08995 * 109.88294 * 183.61710 * 8 7 6 38 38 H 1.09001 * 109.87970 * 62.53770 * 8 7 6 39 39 H 1.09003 * 110.98433 * 325.37301 * 13 11 5 40 40 H 1.09003 * 110.98464 * 89.13742 * 13 11 5 41 41 H 1.08997 * 110.05042 * 263.49698 * 14 13 11 42 42 H 1.09002 * 109.84174 * 142.27684 * 14 13 11 43 43 H 1.09005 * 109.46512 * 60.00633 * 18 16 15 44 44 H 1.08991 * 109.47135 * 300.00153 * 18 16 15 45 45 H 0.97001 * 119.99662 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3611 0.5817 -0.0017 7 6 5.3701 0.7683 -1.1327 8 6 5.9197 2.2051 -1.1676 9 6 4.7377 3.1362 -1.3029 10 1 4.1280 2.7962 -2.1400 11 6 3.8961 3.0212 -0.0011 12 1 4.5039 3.2123 0.8832 13 6 2.8898 4.1552 -0.2368 14 6 3.7957 5.2508 -0.8647 15 7 4.9719 4.5602 -1.4464 16 6 6.0537 5.1443 -1.9987 17 8 6.9544 4.4606 -2.4374 18 6 6.1438 6.6468 -2.0721 19 16 7.7023 7.1199 -2.8616 20 6 7.5478 8.8746 -2.8164 21 1 6.6685 9.3282 -2.3837 22 6 8.5563 9.6736 -3.3370 23 7 9.6279 9.1206 -3.8649 24 14 8.3929 11.5338 -3.2884 25 1 7.7217 12.0042 -4.5269 26 1 7.5851 11.9291 -2.1068 27 1 9.7421 12.1469 -3.1934 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 4.8889 0.5814 0.9521 34 1 3.8539 -0.3745 -0.1300 35 1 6.1979 0.0737 -0.9897 36 1 4.8838 0.5499 -2.0834 37 1 6.5867 2.3262 -2.0211 38 1 6.4564 2.4192 -0.2433 39 1 2.1077 3.8453 -0.9299 40 1 2.4607 4.4982 0.7047 41 1 4.1197 5.9531 -0.0967 42 1 3.2496 5.7792 -1.6461 43 1 6.1053 7.0627 -1.0652 44 1 5.3089 7.0327 -2.6568 45 1 9.7129 8.1546 -3.8897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001056163003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:34 Heat of formation + Delta-G solvation = -90.970262 kcal Electronic energy + Delta-G solvation = -26110.664947 eV Core-core repulsion = 22446.215318 eV Total energy + Delta-G solvation = -3664.449630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25057 -40.59254 -38.88112 -37.04000 -34.77362 -34.05034 -33.89445 -32.46470 -30.62482 -29.85146 -27.12273 -26.70292 -25.01918 -24.40101 -22.63562 -22.54549 -20.76955 -20.15818 -19.75461 -18.13823 -17.59361 -17.43459 -17.31587 -16.83899 -16.44133 -16.17726 -15.72081 -15.61412 -15.53044 -15.12480 -14.75177 -14.62450 -14.54093 -14.21790 -14.01303 -13.90847 -13.79877 -13.31049 -13.21585 -13.05326 -12.76616 -12.73575 -12.60511 -12.30990 -12.07008 -11.99154 -11.95689 -11.89260 -11.76981 -11.59232 -11.12627 -10.94676 -10.49154 -10.36305 -9.88004 -9.62807 -8.95080 -8.90347 -6.30425 1.08189 1.40209 1.49448 1.59881 1.61132 1.73888 1.79167 2.08239 2.31163 2.97184 3.00027 3.16241 3.45950 3.59147 3.65772 3.81857 3.90622 3.99109 4.02192 4.10266 4.10552 4.19096 4.21904 4.28482 4.29370 4.41935 4.52997 4.60625 4.68500 4.73089 4.81312 4.94449 4.95227 5.01580 5.06007 5.07953 5.11151 5.20452 5.29245 5.38504 5.56179 5.62049 6.12782 6.24807 6.41043 6.97715 7.03695 7.16231 8.48478 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028735 B = 0.002599 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.188889 B =10772.550918 C =11552.831510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.510 3.490 4 O -0.571 6.571 5 N -0.605 5.605 6 C 0.106 3.894 7 C -0.123 4.123 8 C -0.121 4.121 9 C 0.119 3.881 10 H 0.055 0.945 11 C 0.132 3.868 12 H 0.096 0.904 13 C -0.105 4.105 14 C 0.092 3.908 15 N -0.610 5.610 16 C 0.550 3.450 17 O -0.552 6.552 18 C -0.102 4.102 19 S -0.189 6.189 20 C -0.614 4.614 21 H 0.073 0.927 22 C -0.019 4.019 23 N -0.912 5.912 24 Si 1.139 2.861 25 H -0.268 1.268 26 H -0.263 1.263 27 H -0.277 1.277 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 -21.707 12.309 31.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.301 3.699 4 O -0.451 6.451 5 N -0.338 5.338 6 C -0.015 4.015 7 C -0.162 4.162 8 C -0.159 4.159 9 C 0.014 3.986 10 H 0.073 0.927 11 C 0.027 3.973 12 H 0.114 0.886 13 C -0.142 4.142 14 C -0.030 4.030 15 N -0.345 5.345 16 C 0.338 3.662 17 O -0.430 6.430 18 C -0.253 4.253 19 S 0.038 5.962 20 C -0.761 4.761 21 H 0.092 0.908 22 C -0.222 4.222 23 N -0.547 5.547 24 Si 0.957 3.043 25 H -0.193 1.193 26 H -0.187 1.187 27 H -0.203 1.203 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.764 -20.856 11.223 29.017 hybrid contribution -1.327 -0.241 0.497 1.438 sum -18.092 -21.097 11.720 30.162 Atomic orbital electron populations 1.21536 0.93563 1.02554 1.01816 1.21747 0.98001 0.91474 1.06464 1.21493 0.80711 0.93246 0.74410 1.90671 1.55710 1.47539 1.51161 1.48099 1.06136 1.06314 1.73257 1.22059 0.89558 0.90295 0.99579 1.21919 0.99792 0.94803 0.99680 1.21513 0.96590 0.95229 1.02586 1.21643 0.97814 0.81071 0.98047 0.92652 1.21980 0.94995 0.83872 0.96499 0.88606 1.22665 0.96157 0.92528 1.02894 1.22873 0.85175 0.96393 0.98608 1.47999 1.19066 1.07786 1.59622 1.19658 0.80631 0.89089 0.76826 1.90662 1.38939 1.65233 1.48194 1.23162 1.01942 0.94873 1.05341 1.84975 1.24407 1.07756 1.79033 1.24042 1.11414 0.90712 1.49951 0.90848 1.27846 0.90882 1.12024 0.91426 1.70892 1.28804 1.13153 1.41875 0.82687 0.76879 0.66749 0.78025 1.19289 1.18737 1.20265 0.89800 0.93373 0.93796 0.86767 0.86177 0.89481 0.85942 0.87747 0.91476 0.92426 0.91789 0.89229 0.88660 0.89431 0.90193 0.87427 0.87792 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.20 71.98 0.66 -0.76 16 2 C -0.14 -1.08 4.84 29.85 0.14 -0.94 16 3 C 0.51 8.35 7.69 87.65 0.67 9.03 16 4 O -0.57 -13.68 12.81 -3.04 -0.04 -13.72 16 5 N -0.60 -9.04 2.91 -791.28 -2.31 -11.35 16 6 C 0.11 0.89 6.32 86.03 0.54 1.44 16 7 C -0.12 -1.60 5.92 30.79 0.18 -1.41 16 8 C -0.12 -2.83 5.11 30.26 0.15 -2.68 16 9 C 0.12 2.98 2.52 45.48 0.11 3.09 16 10 H 0.06 1.49 8.03 -2.39 -0.02 1.47 16 11 C 0.13 2.58 3.32 46.12 0.15 2.74 16 12 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 13 C -0.10 -2.15 5.01 31.57 0.16 -1.99 16 14 C 0.09 2.09 6.63 86.87 0.58 2.66 16 15 N -0.61 -18.16 3.28 -790.78 -2.59 -20.76 16 16 C 0.55 21.65 7.82 87.66 0.69 22.34 16 17 O -0.55 -25.76 14.08 -3.04 -0.04 -25.80 16 18 C -0.10 -4.28 5.42 71.24 0.39 -3.89 16 19 S -0.19 -10.58 19.60 -56.49 -1.11 -11.69 16 20 C -0.61 -35.98 9.50 67.95 0.65 -35.33 16 21 H 0.07 4.06 7.80 -2.92 -0.02 4.04 16 22 C -0.02 -1.09 5.49 84.86 0.47 -0.63 16 23 N -0.91 -58.40 13.67 21.65 0.30 -58.10 16 24 Si 1.14 49.96 29.92 68.60 2.05 52.01 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 30 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 31 H 0.11 0.46 7.75 -2.39 -0.02 0.44 16 32 H 0.12 0.34 8.02 -2.39 -0.02 0.32 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.12 0.23 6.18 -2.39 -0.01 0.22 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.80 6.55 -2.39 -0.02 1.78 16 38 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 39 H 0.09 2.15 6.21 -2.39 -0.01 2.14 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 44 H 0.10 4.08 8.14 -2.40 -0.02 4.06 16 45 H 0.26 17.35 7.12 -92.71 -0.66 16.69 16 Total: -1.00 -81.97 365.78 2.89 -79.08 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.08 Total: 16.67 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.55 Total: -6.35 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -4.60 Total: -90.21 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.08 Total: -39.51 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.01 kcal Atomic # 16 Polarization: -10.58 SS G_CDS: -1.11 Total: -11.69 kcal Total: -81.97 2.89 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056163003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.887 kcal (2) G-P(sol) polarization free energy of solvation -81.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds