Wall clock time and date at job start Tue Mar 31 2020 14:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47142 * 2 1 4 4 O 1.21286 * 119.99955 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00274 * 179.97438 * 3 2 1 6 6 C 1.46803 * 119.57198 * 0.02562 * 5 3 2 7 7 C 1.53469 * 107.59394 * 127.94438 * 6 5 3 8 8 C 1.54318 * 108.15077 * 58.49606 * 7 6 5 9 9 C 1.53010 * 109.92803 * 295.46274 * 8 7 6 10 10 H 1.09005 * 112.09737 * 291.63873 * 9 8 7 11 11 C 1.45116 * 119.58173 * 180.02562 * 5 3 2 12 12 H 1.09000 * 109.96957 * 348.07201 * 11 5 3 13 13 C 1.54423 * 112.30209 * 110.91588 * 11 5 3 14 14 C 1.54598 * 102.53450 * 156.69492 * 13 11 5 15 15 N 1.47120 * 107.24035 * 338.70874 * 14 13 11 16 16 C 1.34779 * 125.76402 * 177.26142 * 15 14 13 17 17 O 1.21278 * 119.99541 * 179.69757 * 16 15 14 18 18 C 1.50693 * 120.00194 * 359.69048 * 16 15 14 19 19 S 1.80999 * 109.47143 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00238 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99622 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00168 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99820 * 180.27733 * 22 20 19 24 24 Si 1.86800 * 119.99759 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 90.00172 * 24 22 20 26 26 H 1.48499 * 109.47026 * 210.00020 * 24 22 20 27 27 H 1.48496 * 109.47474 * 330.00056 * 24 22 20 28 28 H 1.08999 * 109.47189 * 300.00473 * 1 2 3 29 29 H 1.09003 * 109.47291 * 59.99921 * 1 2 3 30 30 H 1.09002 * 109.47448 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46799 * 239.99831 * 2 1 3 32 32 H 1.08996 * 109.46952 * 119.99869 * 2 1 3 33 33 H 1.09005 * 109.83320 * 247.46210 * 6 5 3 34 34 H 1.08998 * 109.83818 * 8.35662 * 6 5 3 35 35 H 1.08995 * 109.64003 * 177.76203 * 7 6 5 36 36 H 1.08992 * 109.64069 * 298.39587 * 7 6 5 37 37 H 1.09005 * 108.89820 * 175.85284 * 8 7 6 38 38 H 1.09003 * 110.40868 * 56.01400 * 8 7 6 39 39 H 1.08998 * 110.81179 * 275.16214 * 13 11 5 40 40 H 1.08998 * 110.81094 * 38.68384 * 13 11 5 41 41 H 1.09009 * 110.01274 * 219.23154 * 14 13 11 42 42 H 1.08997 * 109.77015 * 98.05465 * 14 13 11 43 43 H 1.08998 * 109.47229 * 59.99906 * 18 16 15 44 44 H 1.09001 * 109.47211 * 300.00298 * 18 16 15 45 45 H 0.97004 * 119.99711 * 179.72642 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3030 0.5443 0.0005 7 6 5.2903 0.7692 -1.1527 8 6 5.9919 2.1251 -0.9274 9 6 4.9709 3.2614 -1.0139 10 1 4.5850 3.3897 -2.0253 11 6 3.8310 3.0388 0.0011 12 1 3.0052 3.7179 -0.2107 13 6 4.5040 3.4259 1.3360 14 6 5.4187 4.6015 0.9222 15 7 5.6431 4.4900 -0.5276 16 6 6.3461 5.3554 -1.2847 17 8 6.4698 5.1579 -2.4749 18 6 6.9783 6.5685 -0.6524 19 16 7.8453 7.5267 -1.9198 20 6 8.4708 8.8450 -0.9322 21 1 8.2657 8.8699 0.1279 22 6 9.2262 9.8522 -1.5168 23 7 9.6980 10.8341 -0.7780 24 14 9.5802 9.8095 -3.3504 25 1 8.5069 10.5328 -4.0786 26 1 10.8867 10.4628 -3.6176 27 1 9.6282 8.3992 -3.8127 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.8416 0.5143 0.9478 34 1 3.7655 -0.3921 -0.1489 35 1 6.0341 -0.0275 -1.1589 36 1 4.7512 0.7788 -2.0999 37 1 6.7490 2.2635 -1.6993 38 1 6.4709 2.1471 0.0515 39 1 3.7607 3.7480 2.0653 40 1 5.0967 2.5980 1.7252 41 1 6.3700 4.5380 1.4506 42 1 4.9283 5.5480 1.1498 43 1 7.6873 6.2517 0.1125 44 1 6.2041 7.1859 -0.1968 45 1 10.2292 11.5358 -1.1858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056163004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:37 Heat of formation + Delta-G solvation = -69.770096 kcal Electronic energy + Delta-G solvation = -25974.767784 eV Core-core repulsion = 22311.237463 eV Total energy + Delta-G solvation = -3663.530322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29577 -39.59307 -37.91725 -35.84535 -33.27739 -33.09641 -32.44192 -31.34975 -29.78371 -28.63415 -25.96964 -25.61859 -24.49057 -23.38586 -22.59315 -20.82743 -19.36758 -18.78462 -17.83633 -17.70589 -16.79151 -16.44253 -16.13831 -15.51697 -15.23963 -14.94331 -14.82297 -14.51163 -14.16418 -14.07779 -13.85543 -13.73406 -13.15724 -13.13478 -12.84631 -12.71865 -12.66366 -12.31680 -12.17393 -12.11039 -11.85653 -11.78323 -11.57762 -11.36391 -11.26758 -11.12919 -11.00880 -10.72794 -10.61073 -10.10275 -9.85948 -9.53986 -9.06496 -9.00413 -8.59680 -8.50418 -6.92563 -6.29085 -4.00930 2.25186 2.38240 2.75942 2.92709 3.19132 3.33388 3.50334 3.58681 4.01176 4.22067 4.25969 4.33230 4.47719 4.50956 4.56661 4.62447 4.66850 4.71137 4.75581 4.89562 4.96426 5.05366 5.09976 5.15639 5.19248 5.23249 5.31392 5.39288 5.48336 5.53387 5.53694 5.56553 5.64487 5.74373 5.83462 5.84542 5.88526 5.98705 6.01608 6.13610 6.34078 6.96525 7.53857 7.81567 7.93985 8.40237 8.41556 9.17055 10.80104 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.002553 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.413991 B =10963.424217 C =11161.151102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.511 3.489 4 O -0.536 6.536 5 N -0.600 5.600 6 C 0.103 3.897 7 C -0.132 4.132 8 C -0.129 4.129 9 C 0.135 3.865 10 H 0.097 0.903 11 C 0.132 3.868 12 H 0.111 0.889 13 C -0.138 4.138 14 C 0.103 3.897 15 N -0.624 5.624 16 C 0.550 3.450 17 O -0.516 6.516 18 C -0.117 4.117 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 -26.543 5.773 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.412 6.412 5 N -0.332 5.332 6 C -0.019 4.019 7 C -0.171 4.171 8 C -0.167 4.167 9 C 0.030 3.970 10 H 0.115 0.885 11 C 0.026 3.974 12 H 0.129 0.871 13 C -0.177 4.177 14 C -0.021 4.021 15 N -0.361 5.361 16 C 0.338 3.662 17 O -0.390 6.390 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.597 -26.079 3.971 29.678 hybrid contribution 0.354 0.539 0.837 1.056 sum -13.243 -25.540 4.807 29.168 Atomic orbital electron populations 1.21552 0.92909 1.01649 1.03498 1.21675 0.98704 0.93647 1.04230 1.20911 0.81553 0.92092 0.75440 1.90720 1.54799 1.46594 1.49114 1.47517 1.05966 1.06145 1.73597 1.21947 0.91536 0.88992 0.99469 1.22170 0.98507 0.97802 0.98634 1.22135 0.98227 0.93181 1.03203 1.22053 0.91715 0.84566 0.98639 0.88539 1.21524 0.97260 0.83735 0.94851 0.87063 1.22889 0.98977 0.98244 0.97620 1.22045 0.99682 0.99062 0.81278 1.48753 1.53909 1.24710 1.08720 1.19995 0.77196 0.82682 0.86287 1.90705 1.58947 1.74605 1.14759 1.23255 1.02968 0.96756 1.03806 1.84787 1.65951 1.27329 1.13532 1.22303 1.38646 1.08402 0.97458 0.89380 1.24713 0.93970 0.93960 0.98682 1.69938 1.34064 1.11491 1.36161 0.86734 0.78677 0.81348 0.85079 1.19197 1.19938 1.15938 0.91934 0.91906 0.92008 0.88777 0.88843 0.90851 0.89123 0.90087 0.90880 0.90780 0.91001 0.89527 0.90206 0.90806 0.90690 0.88528 0.88530 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.53 16 2 C -0.14 -0.78 4.73 -27.88 -0.13 -0.91 16 3 C 0.51 4.80 7.66 -10.99 -0.08 4.72 16 4 O -0.54 -7.32 15.31 5.55 0.08 -7.24 16 5 N -0.60 -4.91 2.75 -164.99 -0.45 -5.36 16 6 C 0.10 0.52 6.08 -3.63 -0.02 0.50 16 7 C -0.13 -0.84 6.16 -25.80 -0.16 -0.99 16 8 C -0.13 -1.23 5.21 -26.04 -0.14 -1.37 16 9 C 0.13 1.58 3.25 -66.31 -0.22 1.37 16 10 H 0.10 1.33 8.04 -51.93 -0.42 0.92 16 11 C 0.13 1.33 3.05 -67.28 -0.21 1.12 16 12 H 0.11 1.40 6.96 -51.93 -0.36 1.04 16 13 C -0.14 -1.16 6.11 -25.15 -0.15 -1.32 16 14 C 0.10 1.07 6.30 -2.86 -0.02 1.05 16 15 N -0.62 -8.59 2.84 -162.57 -0.46 -9.05 16 16 C 0.55 10.13 7.87 -10.99 -0.09 10.04 16 17 O -0.52 -11.36 16.13 5.56 0.09 -11.27 16 18 C -0.12 -2.32 5.36 36.00 0.19 -2.13 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 24 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.35 7.61 -51.93 -0.40 -0.04 16 32 H 0.09 0.32 7.93 -51.93 -0.41 -0.09 16 33 H 0.07 0.31 7.61 -51.93 -0.40 -0.08 16 34 H 0.09 0.25 5.82 -51.93 -0.30 -0.05 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.65 7.11 -51.93 -0.37 0.28 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.56 6.92 -51.93 -0.36 0.20 16 41 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.10 1.81 8.14 -51.91 -0.42 1.38 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -35.91 368.57 -8.82 -44.73 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.23 Total: -2.58 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.46 Total: -0.48 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.14 Total: -40.27 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.91 -8.82 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056163004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.042 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds