Wall clock time and date at job start Tue Mar 31 2020 14:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47477 * 2 1 4 4 O 1.21293 * 119.99780 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00278 * 179.97438 * 3 2 1 6 6 C 1.46795 * 119.57576 * 359.97438 * 5 3 2 7 7 C 1.53454 * 107.60376 * 232.06166 * 6 5 3 8 8 C 1.52742 * 108.43878 * 301.92431 * 7 6 5 9 9 C 1.53008 * 110.79832 * 63.77244 * 8 7 6 10 10 H 1.09002 * 111.38186 * 69.71766 * 9 8 7 11 11 C 1.43591 * 119.26023 * 180.79515 * 5 3 2 12 12 H 1.09000 * 109.83714 * 12.03689 * 11 5 3 13 13 C 1.54420 * 110.88331 * 249.34942 * 11 5 3 14 14 C 1.54571 * 102.44712 * 202.74310 * 13 11 5 15 15 N 1.48211 * 107.11762 * 191.92218 * 9 8 7 16 16 C 1.34785 * 125.76309 * 271.75487 * 15 9 8 17 17 O 1.21284 * 120.00150 * 0.02562 * 16 15 9 18 18 C 1.50699 * 119.99814 * 180.02562 * 16 15 9 19 19 S 1.81002 * 109.47121 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00093 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99921 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00085 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99568 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00063 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47000 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46912 * 120.00000 * 24 22 20 27 27 H 1.48497 * 109.47046 * 239.99914 * 24 22 20 28 28 H 1.09000 * 109.47341 * 300.00036 * 1 2 3 29 29 H 1.09000 * 109.47305 * 59.99637 * 1 2 3 30 30 H 1.09002 * 109.47515 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46872 * 239.99509 * 2 1 3 32 32 H 1.09006 * 109.47005 * 120.00036 * 2 1 3 33 33 H 1.09006 * 109.83349 * 112.53527 * 6 5 3 34 34 H 1.09004 * 109.88539 * 351.62258 * 6 5 3 35 35 H 1.09004 * 109.64869 * 182.23747 * 7 6 5 36 36 H 1.09005 * 109.64390 * 61.60277 * 7 6 5 37 37 H 1.09006 * 109.20798 * 303.43650 * 8 7 6 38 38 H 1.08994 * 109.21147 * 184.11934 * 8 7 6 39 39 H 1.08999 * 110.80865 * 320.97670 * 13 11 5 40 40 H 1.09000 * 110.81330 * 84.50687 * 13 11 5 41 41 H 1.08993 * 109.88786 * 141.08735 * 14 13 11 42 42 H 1.09005 * 109.88583 * 262.26314 * 14 13 11 43 43 H 1.09000 * 109.46906 * 299.99775 * 18 16 15 44 44 H 1.09001 * 109.47306 * 60.00337 * 18 16 15 45 45 H 0.97001 * 119.99624 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3030 0.5442 0.0017 7 6 5.2892 0.7692 1.1556 8 6 5.9804 2.1149 0.9450 9 6 4.9699 3.2617 1.0160 10 1 4.5958 3.3994 2.0305 11 6 3.8185 3.0267 0.0179 12 1 2.9881 3.6961 0.2425 13 6 4.4743 3.4028 -1.3286 14 6 5.3863 4.5874 -0.9357 15 7 5.6551 4.4783 0.5191 16 6 6.3783 5.3358 1.2664 17 8 6.5114 5.1402 2.4559 18 6 7.0213 6.5377 0.6238 19 16 7.9162 7.4865 1.8789 20 6 8.5501 8.7928 0.8808 21 1 8.3346 8.8174 -0.1772 22 6 9.3266 9.7902 1.4542 23 7 9.5888 9.7604 2.7438 24 14 9.9981 11.1755 0.3962 25 1 9.5628 10.9799 -1.0101 26 1 9.4841 12.4752 0.8978 27 1 11.4817 11.1722 0.4596 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.8423 0.5139 -0.9452 34 1 3.7661 -0.3926 0.1513 35 1 6.0330 -0.0276 1.1627 36 1 4.7493 0.7789 2.1025 37 1 6.4622 2.1214 -0.0328 38 1 6.7365 2.2546 1.7175 39 1 5.0639 2.5726 -1.7174 40 1 3.7216 3.7169 -2.0516 41 1 6.3294 4.5251 -1.4785 42 1 4.8876 5.5300 -1.1614 43 1 7.7178 6.2084 -0.1472 44 1 6.2514 7.1649 0.1742 45 1 10.1318 10.4573 3.1445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056163005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:40 Heat of formation + Delta-G solvation = -69.401293 kcal Electronic energy + Delta-G solvation = -25932.942542 eV Core-core repulsion = 22269.428213 eV Total energy + Delta-G solvation = -3663.514329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32264 -39.48985 -37.85459 -35.75660 -33.25871 -33.19804 -32.42950 -31.22445 -29.72819 -28.52080 -25.93486 -25.49597 -24.46309 -23.32683 -22.54338 -20.77599 -19.27847 -18.72914 -17.83998 -17.69156 -16.68650 -16.37388 -16.11796 -15.44593 -15.12436 -14.80562 -14.77493 -14.49548 -14.10139 -14.02902 -13.94663 -13.71957 -13.11430 -13.05911 -12.74948 -12.61955 -12.54492 -12.24592 -12.10459 -12.03584 -11.80755 -11.70742 -11.55698 -11.31244 -11.07611 -11.05584 -11.01392 -10.76001 -10.65942 -10.08368 -9.80665 -9.41687 -9.07455 -9.00741 -8.51495 -8.23186 -6.50302 -6.21818 -3.92339 2.26451 2.47932 2.95229 3.06084 3.21578 3.26015 3.31173 3.59413 4.03528 4.19744 4.28442 4.30948 4.52181 4.54234 4.60816 4.64778 4.69524 4.80492 4.93594 4.99771 5.05131 5.11179 5.13481 5.25304 5.26803 5.35007 5.41346 5.50867 5.54218 5.55735 5.60495 5.65556 5.71578 5.81951 5.86165 5.92964 5.95343 6.04240 6.14368 6.21749 6.41795 6.98826 7.59813 7.64791 7.84101 8.35498 8.54070 9.23619 10.85694 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.002461 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.151527 B =11373.505215 C =11653.023430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.510 3.490 4 O -0.536 6.536 5 N -0.597 5.597 6 C 0.103 3.897 7 C -0.133 4.133 8 C -0.130 4.130 9 C 0.134 3.866 10 H 0.094 0.906 11 C 0.132 3.868 12 H 0.112 0.888 13 C -0.139 4.139 14 C 0.105 3.895 15 N -0.625 5.625 16 C 0.553 3.447 17 O -0.514 6.514 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 -23.668 -10.033 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.412 6.412 5 N -0.329 5.329 6 C -0.019 4.019 7 C -0.171 4.171 8 C -0.168 4.168 9 C 0.029 3.971 10 H 0.112 0.888 11 C 0.026 3.974 12 H 0.130 0.870 13 C -0.178 4.178 14 C -0.019 4.019 15 N -0.363 5.363 16 C 0.341 3.659 17 O -0.388 6.388 18 C -0.296 4.296 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.295 -23.288 -8.068 28.003 hybrid contribution 0.516 1.150 -2.114 2.461 sum -12.779 -22.138 -10.182 27.515 Atomic orbital electron populations 1.21549 0.92927 1.01637 1.03488 1.21671 0.98691 0.93666 1.04239 1.20919 0.81604 0.92106 0.75447 1.90720 1.54795 1.46599 1.49086 1.47150 1.06053 1.06215 1.73486 1.21946 0.91517 0.88969 0.99484 1.21899 0.98649 0.97955 0.98646 1.21848 0.98491 0.93233 1.03244 1.21930 0.91547 0.85086 0.98500 0.88763 1.21235 0.97399 0.83967 0.94833 0.86993 1.22922 0.99034 0.98194 0.97681 1.22216 0.99398 0.98853 0.81414 1.49054 1.52722 1.25466 1.09097 1.20011 0.77211 0.82384 0.86261 1.90712 1.59410 1.73947 1.14718 1.23502 1.03160 0.97549 1.05428 1.85400 1.62568 1.25799 1.09688 1.22894 1.37619 1.10981 0.96699 0.90883 1.25000 0.95503 0.97798 0.95343 1.70031 1.36392 1.33632 1.10216 0.86110 0.78603 0.80824 0.79918 1.19616 1.20548 1.20572 0.91903 0.91950 0.92020 0.88852 0.88755 0.90827 0.89116 0.90041 0.90985 0.91293 0.90680 0.90212 0.89648 0.91009 0.90731 0.89305 0.89271 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.15 0.34 -0.54 16 2 C -0.14 -0.81 4.73 -27.89 -0.13 -0.94 16 3 C 0.51 4.90 7.64 -10.99 -0.08 4.81 16 4 O -0.54 -7.41 15.25 5.55 0.08 -7.32 16 5 N -0.60 -5.06 2.67 -166.11 -0.44 -5.51 16 6 C 0.10 0.56 6.05 -3.65 -0.02 0.54 16 7 C -0.13 -0.90 6.11 -26.63 -0.16 -1.07 16 8 C -0.13 -1.33 5.11 -26.86 -0.14 -1.46 16 9 C 0.13 1.66 3.23 -66.37 -0.21 1.45 16 10 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 11 C 0.13 1.39 3.06 -68.11 -0.21 1.18 16 12 H 0.11 1.45 6.89 -51.93 -0.36 1.09 16 13 C -0.14 -1.23 6.07 -25.16 -0.15 -1.38 16 14 C 0.10 1.14 6.46 -2.20 -0.01 1.13 16 15 N -0.63 -9.10 2.89 -161.67 -0.47 -9.57 16 16 C 0.55 10.75 7.89 -10.98 -0.09 10.66 16 17 O -0.51 -11.96 16.13 5.55 0.09 -11.87 16 18 C -0.15 -3.02 5.41 36.01 0.19 -2.83 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.33 7.93 -51.93 -0.41 -0.08 16 32 H 0.09 0.37 7.61 -51.93 -0.40 -0.02 16 33 H 0.07 0.34 7.54 -51.93 -0.39 -0.06 16 34 H 0.09 0.27 5.82 -51.93 -0.30 -0.03 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.67 7.24 -51.93 -0.38 0.29 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.59 6.86 -51.93 -0.36 0.24 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -36.31 371.07 -9.32 -45.63 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.20 Total: -2.54 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.48 Total: -1.46 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.18 Total: -40.63 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.19 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.31 -9.32 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056163005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.769 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds