Wall clock time and date at job start Tue Mar 31 2020 14:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47018 * 2 1 4 4 O 1.21287 * 119.99939 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00465 * 179.97438 * 3 2 1 6 6 C 1.48385 * 126.55579 * 359.97438 * 5 3 2 7 7 C 1.55475 * 106.97286 * 174.51342 * 6 5 3 8 8 C 1.53430 * 101.67298 * 337.40199 * 7 6 5 9 9 H 1.09000 * 111.15099 * 281.18132 * 8 7 6 10 10 C 1.45565 * 126.07096 * 179.12736 * 5 3 2 11 11 H 1.09007 * 108.06123 * 95.74114 * 10 5 3 12 12 C 1.51082 * 120.04893 * 330.97527 * 10 5 3 13 13 C 1.53866 * 107.33932 * 175.87474 * 12 10 5 14 14 C 1.52253 * 111.58636 * 56.77365 * 13 12 10 15 15 N 1.45725 * 116.37131 * 152.71364 * 8 7 6 16 16 C 1.34775 * 122.22810 * 9.03693 * 15 8 7 17 17 O 1.21284 * 120.00289 * 359.97438 * 16 15 8 18 18 C 1.50698 * 120.00022 * 179.97438 * 16 15 8 19 19 S 1.81000 * 109.47429 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00325 * 179.97438 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46845 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47399 * 119.99822 * 24 22 20 27 27 H 1.48498 * 109.47295 * 240.00429 * 24 22 20 28 28 H 1.09006 * 109.46773 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47561 * 299.99961 * 1 2 3 30 30 H 1.08996 * 109.47203 * 60.00459 * 1 2 3 31 31 H 1.08992 * 109.47479 * 239.99846 * 2 1 3 32 32 H 1.09010 * 109.47144 * 119.99301 * 2 1 3 33 33 H 1.08995 * 109.96455 * 55.13612 * 6 5 3 34 34 H 1.09001 * 109.95870 * 293.89249 * 6 5 3 35 35 H 1.08992 * 110.98750 * 219.30229 * 7 6 5 36 36 H 1.09000 * 111.01664 * 95.51249 * 7 6 5 37 37 H 1.08996 * 109.88230 * 295.33747 * 12 10 5 38 38 H 1.09006 * 109.87899 * 56.41970 * 12 10 5 39 39 H 1.09002 * 109.06794 * 177.44743 * 13 12 10 40 40 H 1.09000 * 109.07510 * 296.46712 * 13 12 10 41 41 H 1.09002 * 109.07641 * 191.22956 * 14 13 12 42 42 H 1.08999 * 108.98385 * 72.19334 * 14 13 12 43 43 H 1.09001 * 109.47434 * 59.99478 * 18 16 15 44 44 H 1.08999 * 109.47072 * 299.99957 * 18 16 15 45 45 H 0.97000 * 119.99668 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.4441 0.6570 0.0017 7 6 5.7844 1.4320 -0.1403 8 6 5.3174 2.7446 -0.7831 9 1 5.1449 2.6194 -1.8521 10 6 3.9849 2.9806 -0.0173 11 1 4.2208 3.2564 1.0105 12 6 3.2812 4.1464 -0.6718 13 6 4.1454 5.3967 -0.4322 14 6 5.5603 5.2097 -0.9624 15 7 6.1348 3.9216 -0.5186 16 6 7.3323 3.8420 0.0946 17 8 7.7628 2.7643 0.4470 18 6 8.1365 5.0922 0.3426 19 16 9.6831 4.6591 1.1771 20 6 10.4028 6.2595 1.3375 21 1 9.8790 7.1269 0.9642 22 6 11.6429 6.4051 1.9437 23 7 12.2816 5.3477 2.3982 24 14 12.4062 8.1016 2.1131 25 1 11.4940 9.1156 1.5259 26 1 12.6236 8.4053 3.5504 27 1 13.7075 8.1326 1.3983 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.3184 -0.0258 -0.8386 34 1 4.4336 0.1003 0.9387 35 1 6.4751 0.9008 -0.7950 36 1 6.2360 1.6140 0.8349 37 1 3.1801 3.9651 -1.7418 38 1 2.2972 4.2844 -0.2236 39 1 3.6855 6.2487 -0.9329 40 1 4.1938 5.5965 0.6382 41 1 6.1871 6.0247 -0.6002 42 1 5.5369 5.2345 -2.0519 43 1 7.5635 5.7741 0.9710 44 1 8.3594 5.5754 -0.6086 45 1 11.8857 4.4666 2.3092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056246438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:16 Heat of formation + Delta-G solvation = -68.713606 kcal Electronic energy + Delta-G solvation = -26166.346597 eV Core-core repulsion = 22502.862088 eV Total energy + Delta-G solvation = -3663.484509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21914 -39.51888 -37.73132 -36.08625 -33.27677 -32.92002 -32.56065 -31.46878 -29.39846 -28.94622 -25.36810 -25.12621 -24.65888 -23.04670 -21.91987 -21.55981 -19.40784 -18.99689 -18.14739 -17.17966 -16.61244 -16.25723 -16.18461 -15.82277 -15.35188 -14.82369 -14.60240 -14.25446 -14.01256 -13.86971 -13.84444 -13.70088 -13.25503 -13.15095 -12.68631 -12.44908 -12.39982 -12.27770 -12.21028 -12.02748 -11.87723 -11.71938 -11.50625 -11.46735 -11.15509 -11.03988 -10.92700 -10.89120 -10.23187 -9.91877 -9.61047 -9.27069 -9.04355 -8.89851 -8.59453 -8.25986 -6.71135 -6.65648 -4.03845 2.38049 2.50567 2.81823 2.88036 3.29106 3.37844 3.38213 3.51850 3.98270 4.20328 4.35886 4.44176 4.55895 4.69562 4.73699 4.75122 4.80538 4.88388 4.92776 4.99811 5.03303 5.15674 5.19054 5.21927 5.33642 5.38741 5.43145 5.46283 5.53823 5.60329 5.66762 5.69575 5.73687 5.85320 5.90791 5.94573 5.96810 6.02308 6.09278 6.14165 6.57607 7.26964 7.40958 7.89843 7.94226 8.37092 8.46976 9.23410 10.78431 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.002659 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.136917 B =10528.482740 C =11138.344543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.528 3.472 4 O -0.539 6.539 5 N -0.613 5.613 6 C 0.099 3.901 7 C -0.123 4.123 8 C 0.131 3.869 9 H 0.085 0.915 10 C 0.117 3.883 11 H 0.070 0.930 12 C -0.114 4.114 13 C -0.132 4.132 14 C 0.107 3.893 15 N -0.610 5.610 16 C 0.541 3.459 17 O -0.511 6.511 18 C -0.129 4.129 19 S -0.116 6.116 20 C -0.607 4.607 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.885 5.885 24 Si 1.089 2.911 25 H -0.288 1.288 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.198 -7.754 -8.346 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 C 0.317 3.683 4 O -0.416 6.416 5 N -0.347 5.347 6 C -0.024 4.024 7 C -0.161 4.161 8 C 0.026 3.974 9 H 0.103 0.897 10 C 0.012 3.988 11 H 0.088 0.912 12 C -0.152 4.152 13 C -0.171 4.171 14 C -0.016 4.016 15 N -0.346 5.346 16 C 0.329 3.671 17 O -0.385 6.385 18 C -0.280 4.280 19 S 0.110 5.890 20 C -0.755 4.755 21 H 0.085 0.915 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.916 3.084 25 H -0.214 1.214 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.702 -8.097 -7.223 22.492 hybrid contribution -1.786 0.640 -1.086 2.187 sum -21.488 -7.456 -8.309 24.215 Atomic orbital electron populations 1.21530 0.92961 1.01562 1.03341 1.21621 0.98499 0.93647 1.04288 1.20491 0.80215 0.91955 0.75635 1.90674 1.54250 1.46592 1.50127 1.48333 1.05134 1.07760 1.73495 1.22709 0.86209 0.91344 1.02120 1.22879 0.94633 0.93584 1.04995 1.21982 0.89625 0.86967 0.98835 0.89726 1.21683 0.92342 0.84565 1.00190 0.91211 1.21472 1.00089 0.92710 1.00939 1.21871 0.94486 0.98146 1.02579 1.21683 0.94737 0.85580 0.99584 1.47909 1.18839 1.07029 1.60861 1.20253 0.79779 0.91018 0.76019 1.90656 1.68750 1.29354 1.49768 1.23354 1.01699 0.98031 1.04882 1.84785 1.14042 1.14693 1.75444 1.23747 1.09883 0.92221 1.49617 0.91537 1.26054 0.93180 1.05721 0.92572 1.70745 1.39788 1.00008 1.41370 0.83254 0.75627 0.72580 0.76962 1.21388 1.20871 1.20864 0.92075 0.91981 0.92010 0.89019 0.88978 0.90934 0.90636 0.89204 0.87204 0.91629 0.89264 0.89805 0.91229 0.89059 0.91312 0.89016 0.88970 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -1.03 5.68 -27.88 -0.16 -1.18 16 3 C 0.53 5.83 7.80 -10.98 -0.09 5.75 16 4 O -0.54 -7.67 14.24 5.55 0.08 -7.59 16 5 N -0.61 -6.53 3.29 -163.33 -0.54 -7.07 16 6 C 0.10 0.86 6.65 -1.69 -0.01 0.85 16 7 C -0.12 -1.43 5.07 -25.19 -0.13 -1.56 16 8 C 0.13 1.55 3.29 -66.80 -0.22 1.33 16 9 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 10 C 0.12 1.37 2.54 -68.07 -0.17 1.20 16 11 H 0.07 0.96 8.03 -51.92 -0.42 0.54 16 12 C -0.11 -1.23 5.17 -27.24 -0.14 -1.37 16 13 C -0.13 -1.25 5.90 -26.66 -0.16 -1.41 16 14 C 0.11 1.13 6.29 -3.68 -0.02 1.10 16 15 N -0.61 -8.23 2.92 -164.26 -0.48 -8.71 16 16 C 0.54 9.59 7.71 -10.99 -0.08 9.51 16 17 O -0.51 -10.41 12.66 5.55 0.07 -10.34 16 18 C -0.13 -2.52 4.58 36.00 0.16 -2.36 16 19 S -0.12 -3.04 19.60 -107.50 -2.11 -5.15 16 20 C -0.61 -17.19 9.50 30.94 0.29 -16.90 16 21 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 22 C 0.04 1.01 5.49 -17.43 -0.10 0.92 16 23 N -0.88 -27.21 13.67 55.49 0.76 -26.45 16 24 Si 1.09 24.79 29.92 -169.99 -5.09 19.70 16 25 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 1.61 6.14 -51.93 -0.32 1.29 16 37 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 38 H 0.09 1.11 6.59 -51.93 -0.34 0.76 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.97 6.18 -51.93 -0.32 0.65 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.69 7.74 -51.91 -0.40 1.29 16 44 H 0.09 1.69 8.03 -51.92 -0.42 1.28 16 45 H 0.28 8.71 7.12 -40.82 -0.29 8.42 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -34.64 365.85 -9.47 -44.11 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.20 Total: 0.75 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.48 Total: -4.77 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.26 Total: -42.22 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.15 Total: -17.93 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.09 Total: 19.70 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.64 -9.47 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056246438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.604 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds