Wall clock time and date at job start Tue Mar 31 2020 14:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47230 * 2 1 4 4 O 1.21276 * 119.99740 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99880 * 180.02562 * 3 2 1 6 6 C 1.48385 * 126.56481 * 359.97438 * 5 3 2 7 7 C 1.55468 * 106.97749 * 185.56671 * 6 5 3 8 8 C 1.53435 * 101.67234 * 22.59941 * 7 6 5 9 9 H 1.08997 * 111.15088 * 78.81516 * 8 7 6 10 10 C 1.45023 * 126.56113 * 180.02562 * 5 3 2 11 11 H 1.08999 * 108.70935 * 264.06066 * 10 5 3 12 12 C 1.51092 * 119.19145 * 28.73707 * 10 5 3 13 13 C 1.53870 * 107.33751 * 183.90230 * 12 10 5 14 14 C 1.53184 * 111.46051 * 302.91865 * 13 12 10 15 15 N 1.45725 * 116.37018 * 207.28650 * 8 7 6 16 16 C 1.34775 * 122.22813 * 350.09517 * 15 8 7 17 17 O 1.21284 * 120.00295 * 0.02562 * 16 15 8 18 18 C 1.50708 * 119.99957 * 179.97438 * 16 15 8 19 19 S 1.80998 * 109.47052 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00013 * 180.02562 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48508 * 109.47016 * 299.99635 * 24 22 20 27 27 H 1.48495 * 109.47483 * 59.99992 * 24 22 20 28 28 H 1.08997 * 109.47453 * 59.99705 * 1 2 3 29 29 H 1.08993 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46525 * 299.99748 * 1 2 3 31 31 H 1.09004 * 109.46829 * 240.00182 * 2 1 3 32 32 H 1.08997 * 109.47453 * 120.00295 * 2 1 3 33 33 H 1.09002 * 109.95800 * 66.18265 * 6 5 3 34 34 H 1.09003 * 109.95654 * 304.94452 * 6 5 3 35 35 H 1.08994 * 110.98609 * 264.50422 * 7 6 5 36 36 H 1.08998 * 111.01942 * 140.70328 * 7 6 5 37 37 H 1.09005 * 109.87727 * 303.35907 * 12 10 5 38 38 H 1.08998 * 109.87960 * 64.36639 * 12 10 5 39 39 H 1.09000 * 109.06779 * 63.60115 * 13 12 10 40 40 H 1.09002 * 109.06396 * 182.54594 * 13 12 10 41 41 H 1.09006 * 109.33240 * 288.44367 * 14 13 12 42 42 H 1.08994 * 109.24360 * 169.10332 * 14 13 12 43 43 H 1.09005 * 109.46512 * 60.00633 * 18 16 15 44 44 H 1.08991 * 109.47135 * 300.00153 * 18 16 15 45 45 H 0.97001 * 119.99662 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4443 0.6568 -0.0006 7 6 5.7844 1.4317 0.1430 8 6 5.3167 2.7442 0.7855 9 1 5.1430 2.6188 1.8543 10 6 3.9940 2.9701 -0.0001 11 1 4.2429 3.2380 -1.0269 12 6 3.2785 4.1395 0.6351 13 6 4.1426 5.3902 0.3966 14 6 5.5563 5.2101 0.9584 15 7 6.1345 3.9212 0.5221 16 6 7.3403 3.8398 -0.0745 17 8 7.7783 2.7604 -0.4120 18 6 8.1439 5.0903 -0.3232 19 16 9.7028 4.6544 -1.1331 20 6 10.4197 6.2555 -1.2986 21 1 9.8887 7.1245 -0.9395 22 6 11.6668 6.3996 -1.8905 23 7 12.3138 5.3403 -2.3287 24 14 12.4271 8.0969 -2.0653 25 1 13.7519 7.9802 -2.7260 26 1 11.5379 8.9552 -2.8887 27 1 12.5957 8.7047 -0.7210 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.4348 0.1002 -0.9377 34 1 4.3175 -0.0261 0.8395 35 1 6.2364 1.6137 -0.8320 36 1 6.4748 0.9007 0.7982 37 1 2.3002 4.2711 0.1727 38 1 3.1624 3.9662 1.7050 39 1 4.2037 5.5817 -0.6747 40 1 3.6737 6.2451 0.8838 41 1 5.5175 5.2344 2.0475 42 1 6.1894 6.0241 0.6056 43 1 8.3527 5.5828 0.6265 44 1 7.5774 5.7645 -0.9654 45 1 11.9191 4.4589 -2.2376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056246440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:18 Heat of formation + Delta-G solvation = -68.368021 kcal Electronic energy + Delta-G solvation = -26167.751483 eV Core-core repulsion = 22504.281960 eV Total energy + Delta-G solvation = -3663.469523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24232 -39.52174 -37.74197 -36.06351 -33.28425 -32.90929 -32.55924 -31.47185 -29.36103 -28.93607 -25.37052 -25.12335 -24.65369 -23.04146 -21.92904 -21.56654 -19.41330 -18.99559 -18.14659 -17.18168 -16.61844 -16.25228 -16.19737 -15.82431 -15.35437 -14.82560 -14.58319 -14.26450 -14.00668 -13.85231 -13.82711 -13.70021 -13.25684 -13.14125 -12.68600 -12.45336 -12.40405 -12.27255 -12.20795 -12.02803 -11.87608 -11.71035 -11.50909 -11.46890 -11.15817 -11.04869 -10.94363 -10.87843 -10.19731 -9.91824 -9.60160 -9.27833 -9.04584 -8.90693 -8.58858 -8.26379 -6.71186 -6.65329 -4.03623 2.38059 2.50703 2.81932 2.88805 3.29110 3.35690 3.38875 3.55588 3.97265 4.21069 4.36723 4.43700 4.57483 4.69459 4.73552 4.74756 4.80880 4.88477 4.92052 4.99955 5.03338 5.15501 5.19248 5.22301 5.33725 5.38757 5.43210 5.46110 5.54011 5.60060 5.67129 5.69755 5.74138 5.84812 5.90859 5.94621 5.96660 6.02572 6.08952 6.15586 6.57541 7.27111 7.41228 7.88440 7.93974 8.37319 8.46839 9.23532 10.78549 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.002656 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.809553 B =10538.840002 C =11150.158421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.529 3.471 4 O -0.539 6.539 5 N -0.612 5.612 6 C 0.098 3.902 7 C -0.123 4.123 8 C 0.131 3.869 9 H 0.086 0.914 10 C 0.118 3.882 11 H 0.071 0.929 12 C -0.115 4.115 13 C -0.132 4.132 14 C 0.107 3.893 15 N -0.611 5.611 16 C 0.541 3.459 17 O -0.511 6.511 18 C -0.129 4.129 19 S -0.115 6.115 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.036 3.964 23 N -0.883 5.883 24 Si 1.083 2.917 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.303 -7.777 8.080 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.318 3.682 4 O -0.416 6.416 5 N -0.347 5.347 6 C -0.025 4.025 7 C -0.161 4.161 8 C 0.026 3.974 9 H 0.104 0.896 10 C 0.013 3.987 11 H 0.089 0.911 12 C -0.153 4.153 13 C -0.170 4.170 14 C -0.016 4.016 15 N -0.347 5.347 16 C 0.329 3.671 17 O -0.385 6.385 18 C -0.280 4.280 19 S 0.111 5.889 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.517 5.517 24 Si 0.909 3.091 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.790 -8.124 6.986 22.504 hybrid contribution -1.819 0.658 1.066 2.209 sum -21.609 -7.466 8.053 24.239 Atomic orbital electron populations 1.21530 0.92950 1.01573 1.03346 1.21620 0.98500 0.93613 1.04303 1.20476 0.80132 0.91964 0.75623 1.90671 1.54240 1.46585 1.50102 1.48172 1.05120 1.07853 1.73513 1.22723 0.86231 0.91428 1.02133 1.22870 0.94617 0.93685 1.04882 1.21987 0.89723 0.86960 0.98743 0.89611 1.21591 0.92344 0.84659 1.00127 0.91135 1.21499 0.99976 0.92771 1.01098 1.22027 0.94492 0.98128 1.02395 1.21879 0.94671 0.85518 0.99510 1.47913 1.18237 1.07025 1.61505 1.20256 0.79800 0.91039 0.76006 1.90661 1.68754 1.29251 1.49875 1.23356 1.01719 0.98045 1.04859 1.84783 1.12970 1.14469 1.76674 1.23686 1.09303 0.92074 1.50465 0.91630 1.26051 0.93124 1.05726 0.92595 1.70808 1.39636 0.99895 1.41408 0.83339 0.76363 0.72677 0.76702 1.20263 1.21122 1.21114 0.91980 0.92066 0.92004 0.88968 0.89007 0.90672 0.90895 0.87359 0.89204 0.89270 0.91643 0.91200 0.89944 0.91255 0.89057 0.88985 0.89010 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -1.02 5.68 -27.88 -0.16 -1.18 16 3 C 0.53 5.81 7.80 -10.99 -0.09 5.73 16 4 O -0.54 -7.63 14.20 5.56 0.08 -7.55 16 5 N -0.61 -6.49 3.28 -163.72 -0.54 -7.03 16 6 C 0.10 0.85 6.64 -1.69 -0.01 0.84 16 7 C -0.12 -1.43 5.01 -25.19 -0.13 -1.55 16 8 C 0.13 1.55 3.32 -66.79 -0.22 1.33 16 9 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 10 C 0.12 1.38 2.52 -68.35 -0.17 1.20 16 11 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 12 C -0.12 -1.24 5.11 -27.24 -0.14 -1.38 16 13 C -0.13 -1.25 5.94 -26.18 -0.16 -1.41 16 14 C 0.11 1.13 6.35 -3.21 -0.02 1.11 16 15 N -0.61 -8.23 2.91 -163.71 -0.48 -8.71 16 16 C 0.54 9.59 7.71 -10.98 -0.08 9.50 16 17 O -0.51 -10.42 12.69 5.55 0.07 -10.35 16 18 C -0.13 -2.53 4.57 36.01 0.16 -2.36 16 19 S -0.12 -3.02 19.60 -107.50 -2.11 -5.13 16 20 C -0.61 -17.21 9.50 30.94 0.29 -16.92 16 21 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 22 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.17 13.67 55.49 0.76 -26.41 16 24 Si 1.08 24.65 29.92 -169.99 -5.09 19.56 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 1.58 6.21 -51.93 -0.32 1.26 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.11 6.55 -51.93 -0.34 0.77 16 38 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.97 6.18 -51.93 -0.32 0.65 16 43 H 0.09 1.69 8.01 -51.91 -0.42 1.27 16 44 H 0.09 1.69 7.77 -51.92 -0.40 1.29 16 45 H 0.28 8.70 7.12 -40.82 -0.29 8.41 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -34.66 365.84 -9.46 -44.12 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.21 Total: 0.80 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.47 Total: -4.82 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.25 Total: -42.14 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.15 Total: -17.91 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.56 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.11 Total: -5.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.66 -9.46 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056246440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.244 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds