Wall clock time and date at job start Tue Mar 31 2020 14:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47153 * 2 1 4 4 O 1.21287 * 120.00073 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.46890 * 125.58064 * 359.97438 * 5 3 2 7 7 C 1.54051 * 107.71083 * 177.01569 * 6 5 3 8 8 C 1.54069 * 103.74485 * 342.87148 * 7 6 5 9 9 H 1.09002 * 109.15808 * 273.52513 * 8 7 6 10 10 C 1.47659 * 125.58461 * 179.97438 * 5 3 2 11 11 H 1.09006 * 110.55930 * 321.64756 * 10 5 3 12 12 C 1.52920 * 107.99241 * 83.59361 * 10 5 3 13 13 C 1.52938 * 109.79088 * 171.84108 * 12 10 5 14 14 C 1.53057 * 108.49442 * 294.00302 * 13 12 10 15 15 N 1.44197 * 111.76873 * 152.58686 * 8 7 6 16 16 C 1.34780 * 117.75516 * 93.50811 * 15 8 7 17 17 O 1.21281 * 119.99900 * 0.02562 * 16 15 8 18 18 C 1.50693 * 119.99602 * 180.02562 * 16 15 8 19 19 S 1.80999 * 109.47287 * 180.02562 * 18 16 15 20 20 C 1.76191 * 100.00295 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00400 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00101 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00165 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47384 * 119.99812 * 24 22 20 27 27 H 1.48497 * 109.47140 * 240.00211 * 24 22 20 28 28 H 1.09005 * 109.46972 * 60.00176 * 1 2 3 29 29 H 1.09002 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47082 * 300.00064 * 1 2 3 31 31 H 1.09000 * 109.47082 * 239.99936 * 2 1 3 32 32 H 1.08996 * 109.47104 * 120.00093 * 2 1 3 33 33 H 1.09001 * 109.81287 * 57.45780 * 6 5 3 34 34 H 1.09005 * 109.80710 * 296.56138 * 6 5 3 35 35 H 1.08995 * 110.57059 * 224.30677 * 7 6 5 36 36 H 1.09007 * 110.69987 * 101.49174 * 7 6 5 37 37 H 1.08995 * 109.41958 * 291.93721 * 12 10 5 38 38 H 1.09000 * 109.42019 * 51.80910 * 12 10 5 39 39 H 1.09004 * 109.63720 * 53.70843 * 13 12 10 40 40 H 1.09001 * 109.63716 * 174.30146 * 13 12 10 41 41 H 1.08998 * 109.45977 * 173.83513 * 14 13 12 42 42 H 1.08999 * 109.45433 * 293.80787 * 14 13 12 43 43 H 1.09004 * 109.47288 * 300.00170 * 18 16 15 44 44 H 1.09005 * 109.47703 * 59.99872 * 18 16 15 45 45 H 0.96998 * 120.00073 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4160 0.6487 -0.0006 7 6 5.7697 1.3800 -0.0777 8 6 5.3947 2.7947 -0.5589 9 1 5.3548 2.8032 -1.6482 10 6 3.9827 3.0047 -0.0011 11 1 3.4195 3.6903 -0.6344 12 6 4.0362 3.5018 1.4440 13 6 4.8562 4.7906 1.5184 14 6 6.3086 4.4631 1.1633 15 7 6.3457 3.7817 -0.1109 16 6 7.3611 4.0963 -0.9394 17 8 7.4513 3.5549 -2.0209 18 6 8.3843 5.1208 -0.5218 19 16 9.6092 5.3219 -1.8391 20 6 10.6503 6.5395 -1.1057 21 1 10.4244 6.9209 -0.1209 22 6 11.7614 7.0078 -1.7932 23 7 12.0371 6.5426 -2.9933 24 14 12.8657 8.2982 -1.0153 25 1 12.3422 8.6526 0.3284 26 1 14.2422 7.7571 -0.8828 27 1 12.8907 9.5103 -1.8729 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.2995 -0.0052 -0.8648 34 1 4.3646 0.0625 0.9169 35 1 6.4278 0.8927 -0.7970 36 1 6.2414 1.4220 0.9042 37 1 3.0238 3.6956 1.7983 38 1 4.5005 2.7413 2.0719 39 1 4.4608 5.5178 0.8091 40 1 4.8090 5.1971 2.5286 41 1 6.8850 5.3863 1.1043 42 1 6.7337 3.8180 1.9322 43 1 7.8895 6.0744 -0.3377 44 1 8.8814 4.7876 0.3892 45 1 12.8138 6.8696 -3.4735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056246442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:21 Heat of formation + Delta-G solvation = -70.745920 kcal Electronic energy + Delta-G solvation = -25975.024971 eV Core-core repulsion = 22311.452334 eV Total energy + Delta-G solvation = -3663.572636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27256 -39.65142 -37.87812 -35.91651 -33.29768 -33.00648 -32.45479 -31.55458 -29.71351 -28.82333 -25.56884 -25.32014 -24.94419 -23.03945 -22.49495 -20.93968 -19.40716 -18.60978 -17.78652 -17.50861 -17.00143 -16.39326 -15.94709 -15.52075 -15.34134 -14.93516 -14.82627 -14.39354 -14.16305 -13.95737 -13.74824 -13.41125 -13.33039 -13.14073 -12.83752 -12.67233 -12.56667 -12.30577 -12.08124 -11.96784 -11.82239 -11.68191 -11.51801 -11.27489 -11.09470 -11.04621 -10.98394 -10.77377 -10.61413 -10.06444 -9.82071 -9.43142 -9.10022 -8.96903 -8.58948 -8.25322 -6.53598 -6.24487 -3.95317 2.36215 2.49323 2.92699 2.97327 3.19728 3.24664 3.29347 3.54624 4.06696 4.17201 4.24619 4.48087 4.54793 4.65199 4.68934 4.72218 4.74814 4.81028 4.92101 4.95289 5.09256 5.10946 5.20182 5.26122 5.34474 5.39151 5.44548 5.48135 5.56050 5.59534 5.64864 5.70656 5.75434 5.81201 5.85533 5.87797 5.95599 5.97495 6.06566 6.11246 6.72476 7.20159 7.39088 7.57303 7.89081 8.32588 8.45817 9.21099 10.82953 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033374 B = 0.002492 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.780251 B =11231.696854 C =11664.423808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.528 3.472 4 O -0.539 6.539 5 N -0.617 5.617 6 C 0.104 3.896 7 C -0.144 4.144 8 C 0.145 3.855 9 H 0.104 0.896 10 C 0.135 3.865 11 H 0.094 0.906 12 C -0.124 4.124 13 C -0.131 4.131 14 C 0.106 3.894 15 N -0.601 5.601 16 C 0.527 3.473 17 O -0.512 6.512 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.447 -12.732 11.229 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.318 3.682 4 O -0.416 6.416 5 N -0.351 5.351 6 C -0.020 4.020 7 C -0.183 4.183 8 C 0.039 3.961 9 H 0.122 0.878 10 C 0.031 3.969 11 H 0.112 0.888 12 C -0.163 4.163 13 C -0.170 4.170 14 C -0.018 4.018 15 N -0.335 5.335 16 C 0.315 3.685 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.739 -13.074 9.478 24.737 hybrid contribution 0.763 1.352 1.835 2.403 sum -17.976 -11.722 11.313 24.259 Atomic orbital electron populations 1.21541 0.92923 1.01615 1.03405 1.21620 0.98544 0.93461 1.04326 1.20487 0.80142 0.91996 0.75621 1.90715 1.54264 1.46747 1.49856 1.48639 1.05228 1.07595 1.73658 1.21960 0.86731 0.91288 1.01982 1.22828 0.96140 0.95946 1.03381 1.20790 0.87074 0.87432 1.00817 0.87814 1.21679 0.92770 0.85000 0.97402 0.88814 1.21785 1.01067 0.97618 0.95813 1.21829 0.94788 0.97636 1.02752 1.21382 0.97485 0.97935 0.84974 1.46673 1.27056 1.41705 1.18109 1.20544 0.81374 0.82591 0.83957 1.90692 1.73745 1.52416 1.21654 1.23599 1.00335 0.99511 1.06698 1.85416 1.24562 1.54120 1.19384 1.22889 1.13145 1.26542 1.05690 0.90856 1.24997 0.96921 0.96875 0.94817 1.70023 1.27090 1.41631 1.11491 0.86117 0.79811 0.80429 0.79140 1.19598 1.20572 1.20558 0.91923 0.92015 0.91999 0.88867 0.88996 0.90868 0.91145 0.89055 0.90157 0.91085 0.91417 0.90850 0.90037 0.88707 0.91926 0.89019 0.89090 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.95 5.61 -27.88 -0.16 -1.11 16 3 C 0.53 5.63 7.84 -10.99 -0.09 5.54 16 4 O -0.54 -7.80 16.26 5.55 0.09 -7.71 16 5 N -0.62 -6.04 2.87 -164.17 -0.47 -6.52 16 6 C 0.10 0.77 6.48 -3.28 -0.02 0.75 16 7 C -0.14 -1.38 6.45 -25.62 -0.17 -1.54 16 8 C 0.14 1.75 2.76 -68.46 -0.19 1.56 16 9 H 0.10 1.50 7.10 -51.93 -0.37 1.13 16 10 C 0.14 1.49 2.95 -67.20 -0.20 1.29 16 11 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 12 C -0.12 -1.19 5.31 -26.80 -0.14 -1.33 16 13 C -0.13 -1.19 6.09 -26.73 -0.16 -1.35 16 14 C 0.11 1.11 5.98 -5.06 -0.03 1.08 16 15 N -0.60 -8.03 2.76 -168.47 -0.47 -8.50 16 16 C 0.53 9.50 7.58 -10.99 -0.08 9.42 16 17 O -0.51 -11.10 15.14 5.56 0.08 -11.02 16 18 C -0.15 -2.93 4.45 36.00 0.16 -2.77 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -14.91 9.50 30.94 0.29 -14.62 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 24 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.02 5.68 -51.93 -0.30 0.72 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.65 7.28 -51.91 -0.38 1.27 16 44 H 0.09 1.62 7.99 -51.91 -0.41 1.21 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -34.88 373.40 -9.50 -44.37 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.33 Total: -1.66 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.53 Total: -1.75 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.20 Total: -40.11 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.88 -9.50 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056246442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.372 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds